These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8246#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 834 fasta sequence [CGACACCAGAAACTCTCCAGGGGGAACAGAAACATGCTAGAAATTAATGCAAAATTACTGCGAGATCAAAGTGCAGTGTTTATGTGCGGTGAGGTGGTGGAGTGTTTAATTGATTTCATTCACCCATCCCTACCGGAGCACAAGATTTCACAGAGCAATAGTGATATTTTGGAAAATCTTGCCTGGGCGACGGTGCAGCTGCACTGCTACTGCAACGCCTCGTTTAACGAGAAAGCTCCGCATGATGCTGCCGCGAACAGAAACGTTGGCGGCAGCACGTCGCTAAACGCCAGCAACCAGCTCAAGGGAGAGGTGCTGCACTCGACCGAACCGAAGATACTGTTCTGCGATCTGCGCCTGTCCCCGGGAGAAGCAAAACAATTTTTGTATCGTGAAACCGTGCCACTGAATACGCCGCCCACGTACCGCGGAATTCGCGTAAAGTATTACTACAAAATCACGGTTGCCACGCAACGGCTAGGCTCAACCATGCAGGCGCTAAACATTCCGATCCGCGTGCTCCCGCTCCCGCTGCCCCAGAGCGATCTCGACGAAGCGATCACGCTGAACGATGAGTCGAACGAAGATCTGGCACCGAACAACCCGTTCCTGGAGAAGAAGC-GGCCGCCGTCGCGCATCGAGTACGCGCTGCACTACTT-GCGCGGCGTGACCGCACG-CGCCGGCCAAACTTCTTCATGATCAACAACAAATGGGGCAAGGTGGGCCGGTTCTGTCTGTTCAAGTCGGCGTACAAGCTCGGCGAGGACATCGTGGCCACGATCGATTTTAGCTGCAAATACCGCAGCCCTGTGGGGAGTACAAGCTAAACATTAA] [+] EMBL CNS09B7I [CGACACCAGAAACTCTCCAGGGGGAACAGAAACATGCTAGAAATTAATGCAAAATTACTGCGAGATCAAAGTGCAGTGTTTATGTGCGGTGAGGTGGTGGAGTGTTTAATTGATTTCATTCACCCATCCCTACCGGAGCACAAGATTTCACAGAGCAATAGTGATATTTTGGAAAATCTTGCCTGGGCGACGGTGCAGCTGCACTGCTACTGCAACGCCTCGTTTAACGAGAAAGCTCCGCATGATGCTGCCGCGAACAGAAACGTTGGCGGCAGCACGTCGCTAAACGCCAGCAACCAGCTCAAGGGAGAGGTGCTGCACTCGACCGAACCGAAGATACTGTTCTGCGATCTGCGCCTGTCCCCGGGAGAAGCAAAACAATTTTTGTATCGTGAAACCGTGCCACTGAATACGCCGCCCACGTACCGCGGAATTCGCGTAAAGTATTACTACAAAATCACGGTTGCCACGCAACGGCTAGGCTCAACCATGCAGGCGCTAAACATTCCGATCCGCGTGCTCCCGCTCCCGCTGCCCCAGAGCGATCTCGACGAAGCGATCACGCTGAACGATGAGTCGAACGAAGATCTGGCACCGAACAACCCGTTCCTGGAGAAGAAGC GGCCGCCGTCGCGCATCGAGTACGCGCTGCACTACTT GCGCGGCGTGACCGCACG CGCCGGCCAAACTTCTTCATGATCAACAACAAATGGGGCAAGGTGGGCCGGTTCTGTCTGTTCAAGTCGGCGTACAAGCTCGGCGAGGACATCGTGGCCACGATCGATTTTAGCTGCAAATACCGCAGCCCTGTGGGGAGTACAAGCTAAACATTAA] [-] EMBL AGA284472 [ CTGCTACTGCAACGCTTCGTTCAACGAGAAAGGTCCGCATGATGCTGCCGCGAACAGAAACGTTGGCGGCAGCACGTCGCTAAACGCCAGCAACCAGCTCAAGGGAGAGGTGCTGCACTCGACCGAACCGAAGATACTGTTCTGCGATTTGCGCCTGTCCCCGGGAGAAGCAAAACAATTTTTGTATCGTGAAACCGTGCCACTGAATACGCCGCCCACGTACCGTGGAATTCGCGTAAAGTATTACTACAAAATCACGGTTGCCACGCAACGGCTAGGCTCAACCGTGCAGGCGCTAAACATTCCGATCCGCGTGCTCCCGCTCCCGCTGCCCCAGAGCGATCTCGACGAAGCGATCACGCTGAACGATGAGTCGAACGAAGATCTGGCACCGAACAACCCGTTCCT ] [-] EMBL CNS09B7J [ gTGTCCCCGGGAGAAGCAAAACAATTTTTGTATCGTGAAACCGTGCCACTGAATACGCCGCCCACGTACCGCGGGATTCGCGTAAAGTATTACTACAAAATCACGGTTGCCACGCAACGGCTAGGCTCAACCATGCAGGCGCTAAACATTCCGATCCGCGTGCTCCCGCTCCCGCTGCCCCAGAGCGATCTCGACGAAGCGATCACGCTGAACGATGAGTCGAACGAAGGTTTGGCACCGAACAACCCGTTCCTGGAGAAGAAGCGGGCCGCCGTCGCGCATCGAGTACGCGCTGCACTACTTGGCGCGGCGTGACCGCACGCCGCCGGCCAAACTTCTTCATGATCAACAACAAATGGGGCAAGGTGGGCCGGTTCTGTCTGTTCAAGTCGGCGTACAAGCTCGGCGAGGACATCGTGGCCACGATCGATTTTAGCTGCAAATACCGCAGCCCTGTGGGGAGTACAAGCTAAA ] consensusID : consensus_8246#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 761 fasta sequence [TCGAGTACGCGCTGCACTACTTGCGCGGCGTGACCGCACGCCGCCGGCCAAACTTCTTCATGATCAACAACAAATGGGGCAAAGTGGGCCGGTTCTGTCTGTTCAAGTCGGCGTACAAGCTCGGCGAGGACATCGTGGCCACGATCGATTTTAGCTGCGGTACGATCAAGTGTGTGCAGCTTTCCGTCACGTTGCAGTGCGAAGAAACGGAGCTGTTGCATGGTGCCGTCTCACCGCCGAGCGGTACGCCCAGTGCAAAGGAAGACTCGAAAGGGGCGGACAGTGCCGATGTTGCCTCGAGCACCGCCGAGGGTGCGAACGAGCCGGAACGGCCGAAGAACATTTCCCGCGTGACCAACTACAGCAAGCATCACGAAGTGTGCCTGGGCATGCTGCAGACGCAAGTGATCCTGCCCATCCCGCTGCACGTCACTCCCACCTTCCGGACGGAGCTGATCGAGGTCAGCTGGCGGTTACACTTTCAGTTCGTGACCAGCACGAACGCGGAGCTGAGCAGCGAGATGCTGCTCGATCGCACCGCCGAAAGCCAAGAAAGGCTGGAGTGGGTCGCAACGACGGACATTGCGATCGAGACGATGATCTGGAGCCTTCCGATTACGATCTACCCGACGGCACCGCTGCAAATACCGCAGCCCTGTGGGGAGTACAAGCTAAACATTAAGTAACGTTCTGTGCCGG-CTGCCGTGCAATAAACCAAGTCCTTTTCTGTGGCGCTGGAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AGA280871 [TCGAGTACGCGCTGCACTACTTGCGCGGCGTGACCGCACGCCGCCGGCCAAACTTCTTCATGATCAACAACAAATGGGGCAAAGTGGGCCGGTTCTGTCTGTTCAAGTCGGCGTACAAGCTCGGCGAGGACATCGTGGCCACGATCGATTTTAGCTGCGGTACGATCAAGTGTGTGCAGCTTTCCGTCACGTTGCAGTGCGAAGAAACGGAGCTGTTGCATGGTGCCGTCTCACCGCCGAGCGGTACGCCCAGTGCAAAGGAAGACTCGAAAGGGGCGGACAGTGCCGATGTTGCCTCGAGCACCGCCGAGGGTGCGAACGAGCCGGAACGGCCGAAGAACATTTCCCGCGTGACCAACTACAGCAAGCATCACGAAGTGTGCCTGGGCATGCTGCAGACGCAAGTGATCCTGCCCATCCCGCTGCACGTCACTCCCACCTTCCGGACGGAGCTGATCGAGGTCAGCTGGCGGTTACACTTTCAGTTCGTGACCAGCACGAACGCGGAGCTGAGCAGCGAGATGCTGCTCGATCGCACCGCCGAAAGCCAAGAAAGGCTGGAGTGGGTCGCAACGACGGACATTGCGATCGAGACGATGATCTGGAG ] [+] EMBL AGA281504 [ GAGTACGCGCTGCACTACTTGCGCGGCGTGACCGCACGCCGCC GCCAAACTTCTTCATGATCAACAACAAATGGGGCAAAGTGGGCCGGTTCTGTCTGTTCAAGTCGGCGTACAAGCTCGGCGAGGACATCGTGGCCACGATCGATTTTAGCTGCGGTACGATCAAGTGTGTGCAGCTTTCCGTCACGTTGCAGTGCGAAGAAACGGAGCTGTTGCATGGTGCCGTCTCACCGCCGAGCGGTACGCCAAGTGCAAAGGAAGACTCGAAAGGGGCGGACAGTGCCGATGTTGCC ] [-] EMBL AGA282498 [ GACTCGAAAGGGGCGGACAGTGCCGATGTTGCCTCGAGCACCGCCGAGGGTGCGAACGAGCCGGAACGGCCGAAGAACATTTCCCGCGTGACCAACTACAGCAAGCATCACGAAGTGTGCCTGGGCATGCTGCAGACGCAAGTGATCCTGCCCATCCCGCTGCACGTCACTCCCACCTTCCGGACGGAGCTGATCGAGGTCAGCTGGCGGTTACACTTTCAGTTCGTGACCAGCACGAACGCGGAGCTGAGCAGCGAGATGCTGCTCGATCGCACCGCCGAAAGCGAGGAAGGGCTGGAGTGGGTCGCACCGACGGACATTGCGATCGAGACGATGATCTGGAGCCTTCCGATTACGATCTACCCGACGGCACCGCTGCAAATACCGCAGCCCTGTGGGGAGTACAAGCTAAACATTAAGTAACGTTCTGTGCCGG CTGCCGTGCAATAAACCAAGTCCTT ] [-] EMBL AGA283097 [ GATCGAGACGATGATCTGGAGCCTTCCGATTACGATCTACCCGACGGCACCGCTGCAAATACCGCAGCCCTGTGGGGAGTACAAGCTAAACATTAAGTAACGTTCTGTGCCGGACTGCCGTGCAATAAACCAAGTCCTTTTCTGTGGCGCTG ] [-] EMBL BM646802 [ GATTTACCCGACGGCCCCGCTGCAAATACCGCAGCCCTGTGGGGGGTACAAGCTAAACATTAAGTAACGTTTTGTGCCGG CTGCCGTGCAATAAACCAAGTCCTTTTTTGTGGGGGTGGAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_8246#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 366 fasta sequence [GCCGCCGGGTACTACCGATAACAGATAAAACCGTTTTTTAGTCGTTCGCGCACGCCCGCGTTTCGATCGAGCAATTGGAGCTTTGGGGAATTAAACTGGAAACCCATCCACAGGAGGGAAGAACATGCCCTTCCCTCGTAGTGACACAGCAGGGAGCATCAGAGGATTGCATCATTTCAGGCAACACACATCCGTCGACTGCGAACTGTGCTGCAACGAACGCAAGTGATATTTTGGAAAATCTTGCCTGGGCGACGGTGCATCTGCACTGCTACTGCAACGCCTCGTTCAACGAGAAAGGTCCGCATGATGCTGCCGCGAACAAAAACGTTGGCGGGAGCACGTCGCTAAACGCCAGAAACCAGC] [+] EMBL AGA285777 [GCCGCCGGGTACTACCGATAACAGATAAAACCGTTTTTTAGTCGTTCGCGCACGCCCGCGTTTCGATCGAGCAATTGGAGCTTTGGGGAATTAAACTGGAAACCCATCCACAGGAGGGAAGAACATGCCCTTCCCTCGTAGTGACACAGCAGGGAGCATCAGAGGATTGCATCATTTCAGGCAACACACATCCGTCGACTGCGAACTGTGCTGCAACGAACGCAAGTGATATTTTGGAAAATCTTGCCTGGGCGACGGTGCATCTGCACTGCTACTGCAACGCCTCGTTCAACGAGAAAGGTCCGCATGATGCTGCCGCGAACAAAAACGTTGGCGGGAGCACGTCGCTAAACGCCAGAAACCAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8246#0 ------------------------------------------------CG-ACACCAGAA 11 consensus_8246#2 GCCGCCGGGTACTACCGATAACAGATAAAACCGTTTTTTAGTCGTTCGCGCACGCCCGCG 60 consensus_8246#1 -----------------------------------------TCGAGTACGCGCTGCACTA 19 ** * * consensus_8246#0 ACTCTCCAGGGGGAACAGAAACATGCTAGAAATTAA--TGCAAAATTA-CTGCGAGATCA 68 consensus_8246#2 TTTCGATCGAGCAATTGGAGCTTTG--GGGAATTAAACTGGAAACCCATCCACAGGAGGG 118 consensus_8246#1 CTTGCGCGGCGTGACCGCACGC-CGCCGGCCAAACTTCTTCATGATCAACAACAAATGGG 78 * * * * * * * * * * * * * consensus_8246#0 A-AGTGCAG--TGTTTATGTGCGGTGAGGTGGTGGAGTGT-TTAATTGATTTCATT---- 120 consensus_8246#2 A-AGAACATGCCCTTCCCTCGTAGTGACACAGCAGGGAGCATCAGAGGATTGCATCATTT 177 consensus_8246#1 GCAAAGTGGGCCGGTTCTGTCTGTTCAAGTCGGCGTACAAGCTCGGCGAGGACATCGTGG 138 * * * * * * ** *** consensus_8246#0 -------CACCCATCCCT-ACCGGAGCACAAGATTTCACAGAGCAATA----GTGATATT 168 consensus_8246#2 CAGGCAACACACATCCGTCGACTGCGAACTGTGCTGCAACGAACGCAA----GTGATATT 233 consensus_8246#1 CCACGATCGATTTTAGCTGCGGTACGATCAAGTGTGTGCAGCTTTCCGTCACGTTGCAGT 198 * * * * * * * ** * * consensus_8246#0 TTGGAAAATCTTGCCTGGGCGACGGTGCAGCTGCACTGCT-ACTGCAACGCCTCGTTTAA 227 consensus_8246#2 TTGGAAAATCTTGCCTGGGCGACGGTGCATCTGCACTGCT-ACTGCAACGCCTCGTTCAA 292 consensus_8246#1 GCGAAGAAACGGAGCTGTTGCATGGTGCCGTCTCACCGCCGAGCGGTACGCCCAGTGCAA 258 * * ** * *** * ***** *** ** * * ***** ** ** consensus_8246#0 CGAGAAAGCTCCGCATGATGCTGCCGCGAACAGAAACGTTGGCGGCAGCACGTCGCTAAA 287 consensus_8246#2 CGAGAAAGGTCCGCATGATGCTGCCGCGAACAAAAACGTTGGCGGGAGCACGTCGCTAAA 352 consensus_8246#1 --AGGAAGACTCGAAAGGGGCGGAC---AGTGCCGATGTTGCCTCGAGCACCGCCGAGGG 313 ** *** ** * * ** * * * * **** * ***** * consensus_8246#0 CGCCAGCAA-CCAGCTCAAGGGAGAGGTGCTGCACTCG-ACCGAACCGAAGATACTGTTC 345 consensus_8246#2 CGCCAGAAA-CCAGC--------------------------------------------- 366 consensus_8246#1 TGCGAACGAGCCGGAACGGCCGAAGAACATTTCCCGCGTGACCAACTACAGCAAGCATCA 373 ** * * ** * consensus_8246#0 TGCGATCTGCGCCTGTCCCCGGGAGAAGCAAAACAATTTTTGTATCGTGAAAC-CGTGCC 404 consensus_8246#2 ------------------------------------------------------------ consensus_8246#1 CGAAGTGTGCCTGGGCATGCTGCAGACGCAAGTGATCCTGCCCATCCCGCTGCACGTCAC 433 consensus_8246#0 ACTGAATACGCCGCCCACGTACCGCGGAATTCGCGTAAAGTATTACTACAAAATCACGGT 464 consensus_8246#2 ------------------------------------------------------------ consensus_8246#1 TCCCACCTTCCGGACGGAGCTGATCGAGGTCAGCTGGCGGTTACACTTTCAGTTCGTGAC 493 consensus_8246#0 TGCCACGCAACGGCTAGGCTCAACCATGCAGGCGCTAAACATTCCGATCCGCGTGCTCCC 524 consensus_8246#2 ------------------------------------------------------------ consensus_8246#1 CAGCACGAAC--GCGGAGCTGAGCAGCG-AGATGCTGCTCGATCGCACCGCCGAAAGCCA 550 consensus_8246#0 GCTCCCGCTGCCCCAGAGCGATCTCGACGAAGCGATCACGCTGAACGATGAGTCGAACGA 584 consensus_8246#2 ------------------------------------------------------------ consensus_8246#1 AGAAAGGCTGGAGTGGGTCG-CAACGACGGACATTGCGATCGAGACGATGATCTGGA--G 607 consensus_8246#0 AGATCTGGCACCGAACAACCCGTTCCTGGAGAAGAAGCGGCCGCCGTCGCGCATCGAGTA 644 consensus_8246#2 ------------------------------------------------------------ consensus_8246#1 CCTTCCGATTACGATCTACCCGACGGCACCGCTGCAAATACCGCAGCCCTGTGGGGAGTA 667 consensus_8246#0 CGCGCTGCACT---ACTTGCGCGGCGTGACCGCACGCGCCGGCCAAACTTCTTCATGATC 701 consensus_8246#2 ------------------------------------------------------------ consensus_8246#1 CAAGCTAAACATTAAGTAACGTTCTGTGCCGGCTGCCGTGCAATAAACCAAGTCCTTTTC 727 consensus_8246#0 AACAACAAATGGGGCAAGGTGGGCCGGTTCTGTCTGTTCAAGTCGGCGTACAAGCTCGGC 761 consensus_8246#2 ------------------------------------------------------------ consensus_8246#1 TGTGGCGCTGGAAAAAAAAAAAAAAAAAAAAAAA-------------------------- 761 consensus_8246#0 GAGGACATCGTGGCCACGATCGATTTTAGCTGCAAATACCGCAGCCCTGTGGGGAGTACA 821 consensus_8246#2 ------------------------------------------------------------ consensus_8246#1 ------------------------------------------------------------ consensus_8246#0 AGCTAAACATTAA 834 consensus_8246#2 ------------- consensus_8246#1 ------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||