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Anopheles gambiae
cluster # 8258 cluster # 8258       Sequences # 9       consensus # 7


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8258#0 length = 840 sequences # 2  
consensus_8258#1 length = 738 sequences # 2  
consensus_8258#2 length = 681 sequences # 1  
consensus_8258#3 length = 669 sequences # 1  
consensus_8258#4 length = 490 sequences # 1  
consensus_8258#5 length = 432 sequences # 1  
consensus_8258#6 length = 281 sequences # 1  

consensusID : consensus_8258#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 840
fasta sequence
                              [GGCAGAATCGCGCACGAGGACTACATCTGCTGCGTCGCACACTATC-AAACTAATGACAACAGCTGTGACACACTCGTTTCAAGCAGACAGGGGTAGGAGATTATGGTGTATTGAGGTGGAGTCTATTTGCGAGCCAGTTGATAGCATACATTTGTAACATTCGCCACATCTACTCGGACACGCCATTTGTCCCCTCTCCGGGGGGTGTAAACTATTGGCAATGCAAGCATTACTTCTATCGCCACCAAAAGGAATCGAGAAATAACTGCACAATGTCTCGAATCGAGCACAACAAGTAACGACGTCTCATGAGCAGGTAGTAGAGTAACACTATCACTAGCATTGGCAACAGTGTTTAGATTCGAATTGATTTTCGCTTTGTTTCCATTTACCGTCCATGTGGTGTGTGGTTGTGAAGCACAGCAGTGGTTCTAAAGCTTCTGCCTAAACAGCAATATAAAGCAGCGTATAACACAGCCATGTTTATATACGCGCCGAATGCGCATTGTGCGTGTTGCACAAAGATGGACGCTAAAGCCGTAATAGCCACAACAGAAAANGAAGANACACTTCTTCTTGCTAAATCGCACTAGAGACATACCGGAAAAAGAAAGAGTTGATACTAGGTGACATCNATAGACCGGAAACAGAAAACCACACCCGGGCTTTGTGAAAGGCTTTAATTTCCGGCGGCCGCCCGGGCAAATGGCNACACGGGGGGGGGGAACAAACCAAATTTTGGTTAACACANGGCGAANGTTTGCAGACNTTTTGGGANTCCCACAGCTTAAACCTTTNGAAGGAGNACGAGACGCGCAGGGCAGGCGCNGAAGAACACCC]

[+] EMBL BX467357             [GGCAGAATCGCGCACGAGGACTACATCTGCTGCGTCGCACACTATC AAACTAATGACAACAGCTGTGACACACTCGTTTCAAGCAGACAGGGGTAGGAGATTATGGTGTATTGAGGTGGAGTCTATTTGCGAGCCAGTTGATAGCATACATTTGTAACATTCGCCACATCTACTCGGACACGCCATTTGTCCCCTCTCCGGGGGGTGTAAACTATTGGCAATGCAAGCATTACTTCTATCGCCACCAAAAGGAATCGAGAAATAACTGCACAATGTCTCGAATCGAGCACAACAAGTAACGACGTCTCATGAGCAGGTAGTAGAGTAACACTATCACTAGCATTGGCAACAGTGTTTAGATTCGAATTGATTTTCGCTTTGTTTCCATTTACCGTCCATGTGGTGTGTGGTTGTGAAGCACAGCAGTGGTTCTAAAGCTTCTGCCTAAACAGCAATATAAAGCAGCGTATAACACAGCCATGTTTATATACGCGCCGAATGCGCATTGTGCGTGTTGCACAAAGATGGACGCTAAAGCCGTAATAGCCACAACAGAAAANGAAGANACACTTCTTCTTGCTAAATCGCACTAGAGACATACCGGAAAAAGAAAGAGTTGATACTAGGTGACATCNATAGACCGGAAACAGAAAACCACACCCGGGCTTTGTGAAAGGCTTTAATTTCCGGCGGCCGCCCGGGCAAATGGCNACACGGGGGGGGGGAACAAACCAAATTTTGGTTAACACANGGCGAANGTTTGCAGACNTTTTGGGANTCCCACAGCTTAAACCTTTNGAAGGAGNACGAGACGCGCAGGGCAGGCGCNGAAGAACACCC]
[+] EMBL BX626455             [                                          TATCAAAACTTATNACAACAGCTGTGACACACTCGTTTCAAGCAGACAGGGGTAGGAGATTATGGTGTATTGAGGTGGAGTCTATTTGCGAGCCAGTTGATAGCATACATTTGTAACATTCGCCACATCTACTCGGACACGCCATTTGTCCCCTCTCCGGGGGGTGTAAACTATTGGCAATGCAAGCATTACTTCTATCGCCACCAAAAGGAATCGAGAAATAACTGCACAATGTCTCGAATCGAGCACAACAAGTAACGACGTCTCATGAGCAGGTAGTAGAGTAACACTATCACTAGCATTGGCAACAGTGTTTAGATTCGAATTGATTTTCGCTTTGTTTCCATTTACCGTCCATGTGGTGTGTGGTTGTGAAGCACAGCAGTGGTTCTAAAGCTTCTGCCTAAACAGCAATATAAAGCAGCGTATAACACAGCCATGTTTATATACGCGCCGAATGCGCATTGTGCGTGTTGCACAAAGATGGACGCTAAA CCGTAA                                                                                                                                                                                                                                                                                                         ]


>consensus_8258#0 GGCAGAATCGCGCACGAGGACTACATCTGCTGCGTCGCACACTATCAAACTAATGACAAC AGCTGTGACACACTCGTTTCAAGCAGACAGGGGTAGGAGATTATGGTGTATTGAGGTGGA GTCTATTTGCGAGCCAGTTGATAGCATACATTTGTAACATTCGCCACATCTACTCGGACA CGCCATTTGTCCCCTCTCCGGGGGGTGTAAACTATTGGCAATGCAAGCATTACTTCTATC GCCACCAAAAGGAATCGAGAAATAACTGCACAATGTCTCGAATCGAGCACAACAAGTAAC GACGTCTCATGAGCAGGTAGTAGAGTAACACTATCACTAGCATTGGCAACAGTGTTTAGA TTCGAATTGATTTTCGCTTTGTTTCCATTTACCGTCCATGTGGTGTGTGGTTGTGAAGCA CAGCAGTGGTTCTAAAGCTTCTGCCTAAACAGCAATATAAAGCAGCGTATAACACAGCCA TGTTTATATACGCGCCGAATGCGCATTGTGCGTGTTGCACAAAGATGGACGCTAAAGCCG TAATAGCCACAACAGAAAANGAAGANACACTTCTTCTTGCTAAATCGCACTAGAGACATA CCGGAAAAAGAAAGAGTTGATACTAGGTGACATCNATAGACCGGAAACAGAAAACCACAC CCGGGCTTTGTGAAAGGCTTTAATTTCCGGCGGCCGCCCGGGCAAATGGCNACACGGGGG GGGGGAACAAACCAAATTTTGGTTAACACANGGCGAANGTTTGCAGACNTTTTGGGANTC CCACAGCTTAAACCTTTNGAAGGAGNACGAGACGCGCAGGGCAGGCGCNGAAGAACACCC



consensusID : consensus_8258#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 738
fasta sequence
                              [CCGGTTGATACTAGGTGACATCAATAGACCGCAAAAGCAAACCACCCCGGCTTTGTGAAGCTAATCGCGCGCCGCAAGCACGGAGGAAACAATTGTACAGCAATTAAAATGATCAATTAACTGATTTCACCGTTCTTCGTTTTATCGCGCTATTGCATAAGAAGGTTTACAACAACTAAACCCCGTTCCCTGTGTCTCGATCGAACTTAGATTGAACTGCACAAACTGCACGTTGCAGGCCGTTGTTCTCCAGGTGTCGCCGGGGGCGATCGTGTGGCGCATCACGGTCGTACTAACATTAATGCAGCACACAAAATGGCAATTGCACAAACATGGTAAAGCAGTTTTTGGTTTTTAAACTACGCTCAACATATGAACTTATGATGTGTATATAACAAGCATATATCGCACACCCTTTGCGATGAGAGGTACTTGTTGTTCCTGTTGTTCTGTGTCTTGTGCTCGACACCGAGCGAATGTTTCCTGGGGGATTTGTTAGCTTCGAGCGCTAATAACTGTTTTAGCGATACTTTTAAATAACTCTGCCCACTTTTTGTTTCCATAAAGTGCGATGAATGCTGATGCTGGGGCGGCATGTACATAGTCGTGTGGTCTTCAAAATATAACCAAAAATAAATGACCAGGCGGGCAAACAAAAAAAAACGAGCGCAAACTCAGCTGTGAAATAATAAACAAAAATAGTAAAACTGTTGTAGGGAAATTCCTAAATTAAAAAAA]

[+] EMBL BM583619             [CCGGTTGATACTAGGTGACATCAATAGACCGCAAAAGCAAACCACCCCGGCTTTGTGAAGCTAATCGCGCGCCGCAAGCACGGAGGAAACAATTGTACAGCAATTAAAATGATCAATTAACTGATTTCACCGTTCTTCGTTTTATCGCGCTATTGCATAAGAAGGTTTACAACAACTAAACCCCGTTCCCTGTGTCTCGATCGAACTTAGATTGAACTGCACAAACTGCACGTTGCAGGCCGTTGTTCTCCAGGTGTCGCCGGGGGCGATCGTGTGGCGCATCACGGTCGTACTAACATTAATGCAGCACACAAAATGGCAATTGCACAAACATGGTAAAGCAGTTTTTGGTTTTTAAACTACGCTCAACATATGAACTTATGATGTGTATATAACAAGCATATATCGCACACCCTTTGCGATGAGAGGTACTTGTTGTTCCTGTTGTTCTGTGTCTTGTGCTCGACACCGAGCGAATGTTTCCTGGGGGATTTGTTAGCTTCGAGCGCTAATAACTGTTTTAGCGATACTTTTAAATAACTCTGCCCACTTTTTGTTTCCATAAAGTGCGATGAATGCTGATGCTGGGGCGGCATGTACATAGTCGTGTGGTCTTCAAAATATAACCAAAAATAAATGA                                                                                                  ]
[-] EMBL AGA280436            [                                                                                                                                                                                                                                                     gTCGCCGGGGGCCCGCGGGGGCGATCGTGTGGCGCATCACGGTCGTACTAACATTAATGCAGCACACAAAATGGCAATTGCACAAACATGGTTAAGCAGTTTTTGGTTTTTAAACTACGCTCAACATATGAAC  ATGATGTGTATATAACAAGCATATATCGCACACCCTTTGCGATGAGAGGTACTTGTTGTTCCTGTTGTTCTGTGTCTTGTGCTCGACACCGAGCGAATGTTTCCTGGGGGATTTGTTAGCTTCGAGCGCTAATAACTGTTTTAGCGATACTTTTAAATAACTCTGCCCAC TTTTGTTTCCTTAAAGTGCGATGAATGCTGATGCTGGGGCGGCATGTACATAGTCGTGTGGTCTTCAAAATATAACCAAAAATAAATGACCAGGCGGGCAAACAAAAAAAAACGAGCGCAAACTCAGCTGTGAAATAATAAACAAAAATAGTAAAACTGTTGTAGGGAAATTCCTAAATTAAAAAAA]


>consensus_8258#1 CCGGTTGATACTAGGTGACATCAATAGACCGCAAAAGCAAACCACCCCGGCTTTGTGAAG CTAATCGCGCGCCGCAAGCACGGAGGAAACAATTGTACAGCAATTAAAATGATCAATTAA CTGATTTCACCGTTCTTCGTTTTATCGCGCTATTGCATAAGAAGGTTTACAACAACTAAA CCCCGTTCCCTGTGTCTCGATCGAACTTAGATTGAACTGCACAAACTGCACGTTGCAGGC CGTTGTTCTCCAGGTGTCGCCGGGGGCGATCGTGTGGCGCATCACGGTCGTACTAACATT AATGCAGCACACAAAATGGCAATTGCACAAACATGGTAAAGCAGTTTTTGGTTTTTAAAC TACGCTCAACATATGAACTTATGATGTGTATATAACAAGCATATATCGCACACCCTTTGC GATGAGAGGTACTTGTTGTTCCTGTTGTTCTGTGTCTTGTGCTCGACACCGAGCGAATGT TTCCTGGGGGATTTGTTAGCTTCGAGCGCTAATAACTGTTTTAGCGATACTTTTAAATAA CTCTGCCCACTTTTTGTTTCCATAAAGTGCGATGAATGCTGATGCTGGGGCGGCATGTAC ATAGTCGTGTGGTCTTCAAAATATAACCAAAAATAAATGACCAGGCGGGCAAACAAAAAA AAACGAGCGCAAACTCAGCTGTGAAATAATAAACAAAAATAGTAAAACTGTTGTAGGGAA ATTCCTAAATTAAAAAAA



consensusID : consensus_8258#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 681
fasta sequence
                              [GCCCGAGGGTTTATACACAGCCATGTTTATATACGCGCGAATGCGNATTGTGCGTGTTGCAGAAAGATGGACGCTAAACCGTAATAGCCACAACAGACAAAAACAACACTTCCTCTTGCTAAATCGCACTAGAGACATACCGGAAAAGAAAAGAGTTGATACTAGGTGACATCAATAGACCGCAAAAGAAAACCACCCCGGCTTTGTGAAGCTAATCGCACGCCGCAAGCACGGGGGAAACAATTGTACAGCAATTACAATGATCAATTAACTGATTTCACCGTTCTTCGTTATTATACGCGCTATTGCATAAGAAGGTTTACAATATAAANCCCCGTTCCCTGTGTCTCGATCGAACTTAGATTGAACTGCACAAACTGCACGTTGCAGGCCGCTTGTTCGCCAGGTGTCGCCGGGGGCCCGCCGGGGGCGATCGTGTGGCGCATCACGGTCGTACATAACATTCAACTGCAGACACACACACATGGCAATTGCACAAACATGGTTAAGCACGTTCAGGTTATATAAACTACGCTCAACATATGAACATGATGTGTATATAACAAGCCNTATATCGCACACCCATTCTGCAGAANGAGAGGTACTTGTAGTNCCTGGTAGTACTGTGTCTTGTGCTCGACCACCGAGGCGAATGTATCCTGGGGGATACAGTAAGCCTTC]

[+] EMBL AL693684             [GCCCGAGGGTTTATACACAGCCATGTTTATATACGCGCGAATGCGNATTGTGCGTGTTGCAGAAAGATGGACGCTAAACCGTAATAGCCACAACAGACAAAAACAACACTTCCTCTTGCTAAATCGCACTAGAGACATACCGGAAAAGAAAAGAGTTGATACTAGGTGACATCAATAGACCGCAAAAGAAAACCACCCCGGCTTTGTGAAGCTAATCGCACGCCGCAAGCACGGGGGAAACAATTGTACAGCAATTACAATGATCAATTAACTGATTTCACCGTTCTTCGTTATTATACGCGCTATTGCATAAGAAGGTTTACAATATAAANCCCCGTTCCCTGTGTCTCGATCGAACTTAGATTGAACTGCACAAACTGCACGTTGCAGGCCGCTTGTTCGCCAGGTGTCGCCGGGGGCCCGCCGGGGGCGATCGTGTGGCGCATCACGGTCGTACATAACATTCAACTGCAGACACACACACATGGCAATTGCACAAACATGGTTAAGCACGTTCAGGTTATATAAACTACGCTCAACATATGAACATGATGTGTATATAACAAGCCNTATATCGCACACCCATTCTGCAGAANGAGAGGTACTTGTAGTNCCTGGTAGTACTGTGTCTTGTGCTCGACCACCGAGGCGAATGTATCCTGGGGGATACAGTAAGCCTTC]


>consensus_8258#2 GCCCGAGGGTTTATACACAGCCATGTTTATATACGCGCGAATGCGNATTGTGCGTGTTGC AGAAAGATGGACGCTAAACCGTAATAGCCACAACAGACAAAAACAACACTTCCTCTTGCT AAATCGCACTAGAGACATACCGGAAAAGAAAAGAGTTGATACTAGGTGACATCAATAGAC CGCAAAAGAAAACCACCCCGGCTTTGTGAAGCTAATCGCACGCCGCAAGCACGGGGGAAA CAATTGTACAGCAATTACAATGATCAATTAACTGATTTCACCGTTCTTCGTTATTATACG CGCTATTGCATAAGAAGGTTTACAATATAAANCCCCGTTCCCTGTGTCTCGATCGAACTT AGATTGAACTGCACAAACTGCACGTTGCAGGCCGCTTGTTCGCCAGGTGTCGCCGGGGGC CCGCCGGGGGCGATCGTGTGGCGCATCACGGTCGTACATAACATTCAACTGCAGACACAC ACACATGGCAATTGCACAAACATGGTTAAGCACGTTCAGGTTATATAAACTACGCTCAAC ATATGAACATGATGTGTATATAACAAGCCNTATATCGCACACCCATTCTGCAGAANGAGA GGTACTTGTAGTNCCTGGTAGTACTGTGTCTTGTGCTCGACCACCGAGGCGAATGTATCC TGGGGGATACAGTAAGCCTTC



consensusID : consensus_8258#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 669
fasta sequence
                              [CCGCACACACATACACACACATACACACACACAAAAACACAAACACATACAAACCACACATAAACTTGGCCCAACGGGTGCACGGTGCGTTAAAAACCCAATGCCCTATCTTTCTGTCCGATACTGTACCTTCTTTCTTCGTCACTTTCCGTCTTCCTATTTTGTTTCATAAATTCGTAAAAAATGGCACTTCGTTTTCTTGAGAAATAAATGGTTCTATTAAAATATTTCTTCAGGAACCATCCATAACTTACGTAACGCTTATAAGGGAAAGTGACATGACCGAAACATAATTGGACTATGCAAGCTATAACAAACATGGTATTAATTATCACTTTAAAACATTCATTTGATACTGGTTACTAATAGATAGGTCCTGGTAACTAATGCCTTTTGCTAGCTACTTTACTTACAATTATGCAAACGTGAGAAAGTATTGAATAATTTAGTTACAGTGATTATTTGGTCAGTGCAACGTAACTTGTTTATTTGTGTTACTTTTGTTTACATCTCTTCCATGCTATTGTTTCGGTGGAATCCATCTATTTGAGTTTAGTTCACTGTTGCTTTTAGCTTTGCTATGAAGGTATGCTGAATGAAGGTATGTCCAAAATATCAATCGCTAATTTCTGGTAAAGAACTAACATTCCTAGCTCACCAGCCAAGGAT]

[+] EMBL BM630532             [CCGCACACACATACACACACATACACACACACAAAAACACAAACACATACAAACCACACATAAACTTGGCCCAACGGGTGCACGGTGCGTTAAAAACCCAATGCCCTATCTTTCTGTCCGATACTGTACCTTCTTTCTTCGTCACTTTCCGTCTTCCTATTTTGTTTCATAAATTCGTAAAAAATGGCACTTCGTTTTCTTGAGAAATAAATGGTTCTATTAAAATATTTCTTCAGGAACCATCCATAACTTACGTAACGCTTATAAGGGAAAGTGACATGACCGAAACATAATTGGACTATGCAAGCTATAACAAACATGGTATTAATTATCACTTTAAAACATTCATTTGATACTGGTTACTAATAGATAGGTCCTGGTAACTAATGCCTTTTGCTAGCTACTTTACTTACAATTATGCAAACGTGAGAAAGTATTGAATAATTTAGTTACAGTGATTATTTGGTCAGTGCAACGTAACTTGTTTATTTGTGTTACTTTTGTTTACATCTCTTCCATGCTATTGTTTCGGTGGAATCCATCTATTTGAGTTTAGTTCACTGTTGCTTTTAGCTTTGCTATGAAGGTATGCTGAATGAAGGTATGTCCAAAATATCAATCGCTAATTTCTGGTAAAGAACTAACATTCCTAGCTCACCAGCCAAGGAT]


>consensus_8258#3 CCGCACACACATACACACACATACACACACACAAAAACACAAACACATACAAACCACACA TAAACTTGGCCCAACGGGTGCACGGTGCGTTAAAAACCCAATGCCCTATCTTTCTGTCCG ATACTGTACCTTCTTTCTTCGTCACTTTCCGTCTTCCTATTTTGTTTCATAAATTCGTAA AAAATGGCACTTCGTTTTCTTGAGAAATAAATGGTTCTATTAAAATATTTCTTCAGGAAC CATCCATAACTTACGTAACGCTTATAAGGGAAAGTGACATGACCGAAACATAATTGGACT ATGCAAGCTATAACAAACATGGTATTAATTATCACTTTAAAACATTCATTTGATACTGGT TACTAATAGATAGGTCCTGGTAACTAATGCCTTTTGCTAGCTACTTTACTTACAATTATG CAAACGTGAGAAAGTATTGAATAATTTAGTTACAGTGATTATTTGGTCAGTGCAACGTAA CTTGTTTATTTGTGTTACTTTTGTTTACATCTCTTCCATGCTATTGTTTCGGTGGAATCC ATCTATTTGAGTTTAGTTCACTGTTGCTTTTAGCTTTGCTATGAAGGTATGCTGAATGAA GGTATGTCCAAAATATCAATCGCTAATTTCTGGTAAAGAACTAACATTCCTAGCTCACCA GCCAAGGAT



consensusID : consensus_8258#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 490
fasta sequence
                              [CCGGTGGGTGGGTAGGTTTTAGCATTCGGTGGGGTAAAAACACAGAGTAAAACACAAAAGCACAACATCTGCTGCGTCGCACACTATCAAAACTAATGACAACAGCTGTGACACACTCGTTTCAAGCAGACAGTGGTAGGAGGTTAGGGTGTATTGGAGAGTCTATTTGCGAGCCAGTTGATAGCATACATTTGTAACATTCGCCACATCTACTCGGACACGCCATTTGTTCCCTCTCCGGGGGGGATGGGATGTAAACTGTTGGCAATGCAAGCATTACTTCTATCGCCACCAAAAGGAATCGAGAAATAACTGCACAATGTCTCGAATCGAGCACAACAAGTAACGACGTCTCATGAGCAGGTAGTAGAGTAACACTATCACTAGCATTGGCAACAGTGTTTAGATTCGAATTGAGTTTCGCTTTGTTTCCATTTACCGTCCATGTGGTGTGTGGTTGTGAAGCACAGCAGTGGTTCTAAAGCTTCTG]

[+] EMBL BM650017             [CCGGTGGGTGGGTAGGTTTTAGCATTCGGTGGGGTAAAAACACAGAGTAAAACACAAAAGCACAACATCTGCTGCGTCGCACACTATCAAAACTAATGACAACAGCTGTGACACACTCGTTTCAAGCAGACAGTGGTAGGAGGTTAGGGTGTATTGGAGAGTCTATTTGCGAGCCAGTTGATAGCATACATTTGTAACATTCGCCACATCTACTCGGACACGCCATTTGTTCCCTCTCCGGGGGGGATGGGATGTAAACTGTTGGCAATGCAAGCATTACTTCTATCGCCACCAAAAGGAATCGAGAAATAACTGCACAATGTCTCGAATCGAGCACAACAAGTAACGACGTCTCATGAGCAGGTAGTAGAGTAACACTATCACTAGCATTGGCAACAGTGTTTAGATTCGAATTGAGTTTCGCTTTGTTTCCATTTACCGTCCATGTGGTGTGTGGTTGTGAAGCACAGCAGTGGTTCTAAAGCTTCTG]


>consensus_8258#4 CCGGTGGGTGGGTAGGTTTTAGCATTCGGTGGGGTAAAAACACAGAGTAAAACACAAAAG CACAACATCTGCTGCGTCGCACACTATCAAAACTAATGACAACAGCTGTGACACACTCGT TTCAAGCAGACAGTGGTAGGAGGTTAGGGTGTATTGGAGAGTCTATTTGCGAGCCAGTTG ATAGCATACATTTGTAACATTCGCCACATCTACTCGGACACGCCATTTGTTCCCTCTCCG GGGGGGATGGGATGTAAACTGTTGGCAATGCAAGCATTACTTCTATCGCCACCAAAAGGA ATCGAGAAATAACTGCACAATGTCTCGAATCGAGCACAACAAGTAACGACGTCTCATGAG CAGGTAGTAGAGTAACACTATCACTAGCATTGGCAACAGTGTTTAGATTCGAATTGAGTT TCGCTTTGTTTCCATTTACCGTCCATGTGGTGTGTGGTTGTGAAGCACAGCAGTGGTTCT AAAGCTTCTG



consensusID : consensus_8258#5
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 432
fasta sequence
                              [TTGATAGCATACATTTGTATCATTCGCCACATCTACTCGGACACGACATTTGTTCCCTCTCCGGGGGGTGTAAACTGTTGGCAATGCAAGCATTACTTCTATCGCCACCAAAAGGAATCGAGAAATAACTGCACAATGTCTCGAATCGAGCACAACAAGTAACGACGTCTCATGAGCAGGTAGTAGAGTAACAGTATCACTAGCATTGGCATAGCATTGGCAACAGTGTTTAGATTCGAATTGATTTTCGCTTTGTTTCCATTTACCGTCCATGTGGTGTGTGGTTGTGAAGCACAGCAGTGGTTCTAAAGCTTCTGCCTAAACAGCAATATAAAGCAGCGTATAACACAGCCATGTTTATATACGCGCCCAATGCGCATTGTGCGTGTTGCAGAAAGATGGACGCTAAACCGTAATAGCCACAACAGGCAA]

[+] EMBL AGA281710            [TTGATAGCATACATTTGTATCATTCGCCACATCTACTCGGACACGACATTTGTTCCCTCTCCGGGGGGTGTAAACTGTTGGCAATGCAAGCATTACTTCTATCGCCACCAAAAGGAATCGAGAAATAACTGCACAATGTCTCGAATCGAGCACAACAAGTAACGACGTCTCATGAGCAGGTAGTAGAGTAACAGTATCACTAGCATTGGCATAGCATTGGCAACAGTGTTTAGATTCGAATTGATTTTCGCTTTGTTTCCATTTACCGTCCATGTGGTGTGTGGTTGTGAAGCACAGCAGTGGTTCTAAAGCTTCTGCCTAAACAGCAATATAAAGCAGCGTATAACACAGCCATGTTTATATACGCGCCCAATGCGCATTGTGCGTGTTGCAGAAAGATGGACGCTAAACCGTAATAGCCACAACAGGCAA]


>consensus_8258#5 TTGATAGCATACATTTGTATCATTCGCCACATCTACTCGGACACGACATTTGTTCCCTCT CCGGGGGGTGTAAACTGTTGGCAATGCAAGCATTACTTCTATCGCCACCAAAAGGAATCG AGAAATAACTGCACAATGTCTCGAATCGAGCACAACAAGTAACGACGTCTCATGAGCAGG TAGTAGAGTAACAGTATCACTAGCATTGGCATAGCATTGGCAACAGTGTTTAGATTCGAA TTGATTTTCGCTTTGTTTCCATTTACCGTCCATGTGGTGTGTGGTTGTGAAGCACAGCAG TGGTTCTAAAGCTTCTGCCTAAACAGCAATATAAAGCAGCGTATAACACAGCCATGTTTA TATACGCGCCCAATGCGCATTGTGCGTGTTGCAGAAAGATGGACGCTAAACCGTAATAGC CACAACAGGCAA



consensusID : consensus_8258#6
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 281
fasta sequence
                              [CCGAACGGGTGCACGGTGCGTTAAAAACCCAATGCCCTATCTTTCTGTCCGATACTGTACTTGTTGTTCCTGTTGATCTGTGTCTTGTGCTCGACAACGAGCGAATGTTTCTTGGGGGATTTGTTAGCTTCGAGCGCTATTAACTGTTTTAGCGATACTTTTAAATAACTCTGCCCACTTTTGTTTCCTTAAAGTGCGATGAATGCTGATGCTGGGGCGGCATGTACATAGTCGTGTGGTCTTCAAAATATAACCAAAAATAAATGACAAGGCGGGCAACT]

[+] EMBL BM613726             [CCGAACGGGTGCACGGTGCGTTAAAAACCCAATGCCCTATCTTTCTGTCCGATACTGTACTTGTTGTTCCTGTTGATCTGTGTCTTGTGCTCGACAACGAGCGAATGTTTCTTGGGGGATTTGTTAGCTTCGAGCGCTATTAACTGTTTTAGCGATACTTTTAAATAACTCTGCCCACTTTTGTTTCCTTAAAGTGCGATGAATGCTGATGCTGGGGCGGCATGTACATAGTCGTGTGGTCTTCAAAATATAACCAAAAATAAATGACAAGGCGGGCAACT]


>consensus_8258#6 CCGAACGGGTGCACGGTGCGTTAAAAACCCAATGCCCTATCTTTCTGTCCGATACTGTAC TTGTTGTTCCTGTTGATCTGTGTCTTGTGCTCGACAACGAGCGAATGTTTCTTGGGGGAT TTGTTAGCTTCGAGCGCTATTAACTGTTTTAGCGATACTTTTAAATAACTCTGCCCACTT TTGTTTCCTTAAAGTGCGATGAATGCTGATGCTGGGGCGGCATGTACATAGTCGTGTGGT CTTCAAAATATAACCAAAAATAAATGACAAGGCGGGCAACT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8258#1      ------------------------------------------------------------
consensus_8258#6      ------------------------------------------------------------
consensus_8258#2      GCCCGAGGGTTTATACACAGCCATGTTTATATACGCGCGAATGCGNATTGTGCGTGTTGC 60
consensus_8258#0      ------------------------------------------------------------
consensus_8258#5      ------------------------------------------------------------
consensus_8258#4      ------------------------------------------------------------
consensus_8258#3      ------------------------------------------------------------
                                                                                  

consensus_8258#1      ------------------------------------------------------------
consensus_8258#6      ------------------------------------------------------------
consensus_8258#2      AGAAAGATGGACGCTAAACCGTAATAGCCACAACAGACAAAAACAACACTTCCTCTTGCT 120
consensus_8258#0      ------------------------------------------------------------
consensus_8258#5      ------------------------------------------------------------
consensus_8258#4      ------------------------------------------------------------
consensus_8258#3      ------------------------------------------------------------
                                                                                  

consensus_8258#1      --------------------------------CCGGTTGATACTAGGTGACATCAATAGA 28
consensus_8258#6      ------------------------------------------------------------
consensus_8258#2      AAATCGCAC-TAGAGACATACCGGAAAAGAAAAGAGTTGATACTAGGTGACATCAATAGA 179
consensus_8258#0      ------------------------------------------------------------
consensus_8258#5      ------------------------------------------------------------
consensus_8258#4      ----------------------------------------------------CCGGTGGG 8
consensus_8258#3      ---CCGCACACACATACACACACATACACACACACAAAAACACAAACACATACAAACCAC 57
                                                                                  

consensus_8258#1      CCGCAAAAGCAAACCACCCCGGCTTTGTGAAGCTAATCGCGCGCCGCAAGCACGGAGGAA 88
consensus_8258#6      ------------------------------------------------------------
consensus_8258#2      CCGCAAAAGAAAACCACCCCGGCTTTGTGAAGCTAATCGCACGCCGCAAGCACGGGGGAA 239
consensus_8258#0      ----------------------------------GGCAGAATCGCGCACGAGGACTACAT 26
consensus_8258#5      ------------------------------------------------------------
consensus_8258#4      TGGGTAGGTTTTAGCATTCGGTGGGGTAAAAACACAGAGTAAAACACAAAAGCACAACAT 68
consensus_8258#3      ACATAAACTTGGCCCAACGGGTGCACGGTGCGTTAAAAACCCAATGCCCTATCTTTCTGT 117
                                                                                  

consensus_8258#1      ACAATTGTACAGCAATTAAAATGATCAAT--TAACTGATTTCACCGTTCTTCGTTTTAT- 145
consensus_8258#6      ------------------------------------------------------------
consensus_8258#2      ACAATTGTACAGCAATTACAATGATCAAT--TAACTGATTTCACCGTTCTTCGTTATTAT 297
consensus_8258#0      CTGCTGCGTCGCACACTATCAAA-CTAATGACAACAGCTGTGACACACTCGTTTCAAGCA 85
consensus_8258#5      ------------------------------------------------------------
consensus_8258#4      CTGCTGCGTCGCACACTATCAAAACTAATGACAACAGCTGTGACACACTCGTTTCAAGCA 128
consensus_8258#3      CCGATACTGTACCTTCTTTCTTCGTCACTT-TCCGTCTTCCTATTTTGTTTCATAAATTC 176
                                                                                  

consensus_8258#1      -CGCGCTATTGCATAAGAAGGTTTACAACAACTAA-ACCCCGTTCCCTGTGTCTCGATCG 203
consensus_8258#6      ------------------------------------------------------------
consensus_8258#2      ACGCGCTATTGCATAAGAAGGTTTACAATA-TAAA-NCCCCGTTCCCTGTGTCTCGATCG 355
consensus_8258#0      GACAGGGGTAGGAGATTATGGTGTATTGAGGTGGA-GTCTATTTGCGAGCCAGTTGATAG 144
consensus_8258#5      -----------------------------------------------------TTGATAG 7
consensus_8258#4      GACAGTGGTAGGAGGTTAGGGTGTATTGGAG---A-GTCTATTTGCGAGCCAGTTGATAG 184
consensus_8258#3      GTAAAAAATGGCACTTCGTTTTCTTGAGAAATAAATGGTTCTATTAAAATATTTCTTCAG 236
                                                                                  

consensus_8258#1      AACTTAGATTGAAC-TGCACAAACTGCACGTTG-CAGGCCG-TTGTTCTCCAGGTGTCGC 260
consensus_8258#6      ------------------------------------------------------------
consensus_8258#2      AACTTAGATTGAAC-TGCACAAACTGCACGTTG-CAGGCCGCTTGTTCGCCAGGTGTCGC 413
consensus_8258#0      CATACATTTGTAACATTCGCCACATCTACTCGGACACGCCATTTGTCCCC------TCTC 198
consensus_8258#5      CATACATTTGTATCATTCGCCACATCTACTCGGACACGACATTTGTTCCC------TCTC 61
consensus_8258#4      CATACATTTGTAACATTCGCCACATCTACTCGGACACGCCATTTGTTCCC------TCTC 238
consensus_8258#3      GAACCATCCATAACTTACGTAACGCTTATAAGGGAAAGTGACATGACCGAAA--CATAAT 294
                                                                                  

consensus_8258#1      CGGGGGC-----------GATCGTGTGGCGCATCACGGTCGTACTAACATTAATGCAGCA 309
consensus_8258#6      ------------------------------------------------------------
consensus_8258#2      CGGGGGCCCGCCGGGGGCGATCGTGTGGCGCATCACGGTCGTACATAACATTCAACTGCA 473
consensus_8258#0      CGGGGGG------------------TGTAAACTATTGGCAATGCAAGCATTACTTCTATC 240
consensus_8258#5      CGGGGGG------------------TGTAAACTGTTGGCAATGCAAGCATTACTTCTATC 103
consensus_8258#4      CGGGGGGG-----------ATGGGATGTAAACTGTTGGCAATGCAAGCATTACTTCTATC 287
consensus_8258#3      TGGACTAT-------GCAAGCTATAACAAACATGGTATTAATTATCACTTTAAAACATTC 347
                                                                                  

consensus_8258#1      CACAAA-----ATGGCAATTGCACAAACATGGTAAAGCAGTTTTTGGTTTT-TAAACTAC 363
consensus_8258#6      ------------------------------------------------------------
consensus_8258#2      GACACACACACATGGCAATTGCACAAACATGGTTAAGCACGTTCAGGTTATATAAACTAC 533
consensus_8258#0      GCCACCA----AAAGGAATCG---AGAAATAACTGCACAATGTCTCGAATCGAGCACAAC 293
consensus_8258#5      GCCACCA----AAAGGAATCG---AGAAATAACTGCACAATGTCTCGAATCGAGCACAAC 156
consensus_8258#4      GCCACCA----AAAGGAATCG---AGAAATAACTGCACAATGTCTCGAATCGAGCACAAC 340
consensus_8258#3      ATTTGATACTGGTTACTAATAGATAGGTCCTGGTAACTAATGCCTTTTGCTAGCTACTTT 407
                                                                                  

consensus_8258#1      GCTCAACAT-ATGAACTTATGATGTGTATATAACAAGCAT-ATATCGCACACC--CTTTG 419
consensus_8258#6      -----CCGA-ACGGGTGCACGGTGCGT---TAAAAACCCA-ATGCCCTAT-CT--TTCTG 47
consensus_8258#2      GCTCAACAT-ATGAA--CATGATGTGTATATAACAAGCCNTATATCGCACACCCATTCTG 590
consensus_8258#0      AAGTAACG--ACGTCTCATGAGCAGGTAGTAGAGTAACACTATCACTAGCATTGGCA--- 348
consensus_8258#5      AAGTAACG--ACGTCTCATGAGCAGGTAGTAGAGTAACAGTATCACTAGCATTGGCATAG 214
consensus_8258#4      AAGTAACG--ACGTCTCATGAGCAGGTAGTAGAGTAACACTATCACTAGCATTGGCA--- 395
consensus_8258#3      ACTTACAATTATGCAAACGTGAGAAAGTATTGAATAATTTAGTTACAGTGATT-ATTTGG 466
                                * *                   *  *      *  *              

consensus_8258#1      CG--ATGAGAGGTACTTGT-TGTTCCTGTTGTT-CTGTGTCTTGTGCTCGAC-ACCGAG- 473
consensus_8258#6      TC--CGATACTGTACTTGT-TGTTCCTGTTGAT-CTGTGTCTTGTGCTCGAC-AACGAG- 101
consensus_8258#2      CAGAANGAGAGGTACTTGT-AGTNCCTGGTAGTACTGTGTCTTGTGCTCGACCACCGAGG 649
consensus_8258#0      --------ACAGTGTTTA--GATTCGAATTGAT-TTTCGCTTTGTTTCCATTTACCGTC- 396
consensus_8258#5      CATTGGCAACAGTGTTTA--GATTCGAATTGAT-TTTCGCTTTGTTTCCATTTACCGTC- 270
consensus_8258#4      --------ACAGTGTTTA--GATTCGAATTGAG-TTTCGCTTTGTTTCCATTTACCGTC- 443
consensus_8258#3      TCAGTGCAACGTAACTTGTTTATTTGTGTTACT--TTTGTTTACATCTCTTCCATGCTA- 523
                                     **     *      *     *  *  *      *    *      

consensus_8258#1      CGAATGTTTCCTGGGGGATTT-GTTAGCTTCGAGCGCTAATAACTGTTTTAGCGATACTT 532
consensus_8258#6      CGAATGTTTCTTGGGGGATTT-GTTAGCTTCGAGCGCTATTAACTGTTTTAGCGATACTT 160
consensus_8258#2      CGAATGTATCCTGGGGGATACAGTAAGCCTTC---------------------------- 681
consensus_8258#0      ----CATGTGGTGTGTGGTTGTGAAGCACAGCAGTGGTTCTAAAGCTTCTGCCTAAACAG 452
consensus_8258#5      ----CATGTGGTGTGTGGTTGTGAAGCACAGCAGTGGTTCTAAAGCTTCTGCCTAAACAG 326
consensus_8258#4      ----CATGTGGTGTGTGGTTGTGAAGCACAGCAGTGGTTCTAAAGCTTCTG--------- 490
consensus_8258#3      ---TTGTTTCG-GTGGAATCCATCTA--TTTGAGTTTAGTTCACTGTTGCTTTTA-GCTT 576
                            * *   * *   *                                         

consensus_8258#1      TTAAATAACTCTGCCCACTTTTTGTTTCCATAAAGTGCGATGAATGCTGATG-CTGGGGC 591
consensus_8258#6      TTAAATAACTCTGCCCACTTTT-GTTTCCTTAAAGTGCGATGAATGCTGATG-CTGGGGC 218
consensus_8258#2      ------------------------------------------------------------
consensus_8258#0      CAATATAAAGCAGCGTATAACACAGCCATGTTTATATACGCGCCGAATGCGC-ATTGTGC 511
consensus_8258#5      CAATATAAAGCAGCGTATAACACAGCCATGTTTATATACGCGCCCAATGCGC-ATTGTGC 385
consensus_8258#4      ------------------------------------------------------------
consensus_8258#3      TGCTATGAAGGTATGCTGAATGAAGGTATGTCCAAAATATCAATCGCTAATTTCTGGTAA 636
                                                                                  

consensus_8258#1      GGCATGTACATAGTCGTGTGGTCTTCAAAATATAACCAAAAATAAATGACCAGGCGGGCA 651
consensus_8258#6      GGCATGTACATAGTCGTGTGGTCTTCAAAATATAACCAAAAATAAATGACAAGGCGGGCA 278
consensus_8258#2      ------------------------------------------------------------
consensus_8258#0      GTGTTGCACAAAGATGGACGCTAAAGCCGTAATAGCCACAACAGAAAANGAAGANACACT 571
consensus_8258#5      GTGTTGCAGAAAGATGGACGCTAAA-CCGTAATAGCCACAACAGGCAA------------ 432
consensus_8258#4      ------------------------------------------------------------
consensus_8258#3      AGAACTAACATTCCTAGCTCACCAGCCAAGGAT--------------------------- 669
                                                                                  

consensus_8258#1      AACAAAAAAAAACGAGCGCAAACTCAGCTGTGAAATAATAAACAAAAATAGTAAAACTGT 711
consensus_8258#6      ACT--------------------------------------------------------- 281
consensus_8258#2      ------------------------------------------------------------
consensus_8258#0      TCTTCTTGCTAAATCGCACTAGAGACATACCGGAAAAAGAAAGAGTTGATACTAGGTGAC 631
consensus_8258#5      ------------------------------------------------------------
consensus_8258#4      ------------------------------------------------------------
consensus_8258#3      ------------------------------------------------------------
                                                                                  

consensus_8258#1      TGTAGGGAAATTCCTAAATTAAAAAAA--------------------------------- 738
consensus_8258#6      ------------------------------------------------------------
consensus_8258#2      ------------------------------------------------------------
consensus_8258#0      ATCNATAGACCGGAAACAGAAAACCACACCCGGGCTTTGTGAAAGGCTTTAATTTCCGGC 691
consensus_8258#5      ------------------------------------------------------------
consensus_8258#4      ------------------------------------------------------------
consensus_8258#3      ------------------------------------------------------------
                                                                                  

consensus_8258#1      ------------------------------------------------------------
consensus_8258#6      ------------------------------------------------------------
consensus_8258#2      ------------------------------------------------------------
consensus_8258#0      GGCCGCCCGGGCAAATGGCNACACGGGGGGGGGGAACAAACCAAATTTTGGTTAACACAN 751
consensus_8258#5      ------------------------------------------------------------
consensus_8258#4      ------------------------------------------------------------
consensus_8258#3      ------------------------------------------------------------
                                                                                  

consensus_8258#1      ------------------------------------------------------------
consensus_8258#6      ------------------------------------------------------------
consensus_8258#2      ------------------------------------------------------------
consensus_8258#0      GGCGAANGTTTGCAGACNTTTTGGGANTCCCACAGCTTAAACCTTTNGAAGGAGNACGAG 811
consensus_8258#5      ------------------------------------------------------------
consensus_8258#4      ------------------------------------------------------------
consensus_8258#3      ------------------------------------------------------------
                                                                                  

consensus_8258#1      -----------------------------
consensus_8258#6      -----------------------------
consensus_8258#2      -----------------------------
consensus_8258#0      ACGCGCAGGGCAGGCGCNGAAGAACACCC 840
consensus_8258#5      -----------------------------
consensus_8258#4      -----------------------------
consensus_8258#3      -----------------------------
                                                   




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)