These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8269#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 734 fasta sequence [CCGGCAGCCACAGAGCCAGGCAGGAGAAATTTGCCGCGAGGAAGGAAAAGAAAGCCGCGAACCGAATCGGCAATGTCGAGCACGGAAGATTTCTACCTGCGCTACTATGTGGGCCACAAGGGCAAGTTCGGGCACGAGTTTCTGGAGTTCGAGTTCCGGCCGGACGGGAAGCTGCGGTACGCCAACAACTCCAACTACAAAAACGACACCATGATCCGGAAGGAGGCGTACGTGCACCAGGCGGTGATGGAGGAGCTGAAGCGCATCATACTCGACTCGGAAATTATGGCGGAAGACGATTCGCTGTGGCCACCGCCGGATCGCGTCGGGCGGCAGGAGTTGGAAATCGTGATAGGCGACGAGCACATTTCGTTCACCACGTCC-AAGACGGGCTCGCTGGTGGACGTCAACCAGTCCAAAGATCCGGAAGGCCTGCGTGGCTTCTACTACCTCGTGCAGGATCTAAAGTGTTTGGTGTTTTCGCTCATCGGACTGCACTTCAAAATCAAACCCATCTAAGCAAGCCGGTCGCCACCCCGCCCCCCACACACAAACAAACAGACACACACACACGGTTTTGGTGGAATAACATGATAATATTTTCATTTTATTTACTAAAAAAAAGATTCTCTATCGGCGTGACGTGAAACCGCTCTTTGTAAGAATATAGAATAACAATAAAAACATCGTCCAGCGGAAGCTTTGGAACCATAAAAAACAAAAAAAAAAAAAAA] [+] EMBL BM606305 [CCGGCAGCCACAGAGCCAGGCAGGAGAAATTTGCCGCGAGGAAGGAAAAGAAAGCCGCGAACCGAATCGGCAATGTCGAGCACGGAAGATTTCTACCTGCGCTACTATGTGGGCCACAAGGGCAAGTTCGGGCACGAGTTTCTGGAGTTCGAGTTCCGGCCGGACGGGAAGCTGCGGTACGCCAACAACTCCAACTACAAAAACGACACCATGATCCGGAAGGAGGCGTACGTGCACCAGGCGGTGATGGAGGAGCTGAAGCGCATCATACTCGACTCGGAAATTATGGCGGAAGACGATTCGCTGTGGCCACCGCCGGATCGCGTCGGGCGGCAGGAGTTGGAAATCGTGATAGGCGACGAGCACATTTCGTTCACCACGTCC AAGACGGGCTCGCTGGTGGACGTCAACCAGTCCAAAGATCCGGAAGGCCTGCGTGGCTTCTACTACCTCGTGCAGGATCTAAAGTGTTTGGTGTTTTCGCTCATCGGACTGCACTTCAAAATCAAACCCATCTAAGCTAGCCGGTCGCCACCCCGCCCCCCACACACAAACAAACAGACACACACACACGGTTTTGGTGGAATAACATGATAATATTTTCATTTTATTTACT AAAAAAAGATTCTCTATCGGCGTGACGTGAAACCGCTCTTTGTAAGAATATAGAATAACAAT ] [+] EMBL BM643406 [ ccgtACAGAGCCAGGCAGGAGAAATTTGCCGCGAGGAAGGAATAGAAAGCCGCGAACCGAATCGGCAATGTCGAGCACGGAAGATTTCTACCTGCGCTACTATGTGGGCCACAAGGGCAAGTTCGGGCACGAGTTTCTGGAGTTCGAGTTCCGGCCGGACGGGAAGCTGCGGTACGCCAACAACTCCAACTACAAAAACGACACCATGATCCGGAAGGAGGCGTACGTGCACCAGGCGGTGATGGAGGAGCTGAAGCGCATCATACTCGACTCGGAAATTATGGCGGAAGACGATTCGCTGTGGACACCGCCGGATCGCGTCGGGCGGCAGGAGTTGGAAATCGTGATAGGCGACGAGCACATTTCGTTCACCACGTCC AAGACGGGCTCGCTGGTGGACGTCAACCAGTCCAAAGATCCGGAAGGCCTGCGTGGCTTCTACTACCTCGTGCAGGATCTAAAGTGTTTGGTGTTTTCGCTCATCGGACTGCACTTCAAAATCAAACCCATCTAAGCAAGCCGGTCGCCACCCCGCCCCCCACACACAAACAAATAGACACACACACATGGTTTTGGTGGAAT ] [+] EMBL BM614138 [ ccgATTTGCCGCGAGGAAGGAAAAGAAAGCCGCGAACCGAATCGGCAATGTCGAGCACGGAAGATTTCTACCTGCGCTACTATGTGGGCCACAAGGGCAAGTTCGGGCACGAGTTTCTGGAGTTCGAGTTCCGGCCGGACGGGAAGCTGCGGTACGCCAACAACTCCAACTACAAAAACGACACCATGATCCGGAAGGAGGCGTACGTGCACCAGGCGGTGATGGAGGAGCTGAAGCGCATCATACTCGACTCGGAAATTATGGCGGAAGACGATTCGCTGTGGCCACCGCCGGATCGCGTCGGGCGGCAGGAGTTGGAAATCGTGATAGGCGACGAGCACATTTCGTTCACCACGTCCAAAGACGGGCTCGCTGGTGGACGTCAACCAGTCCAAAGATCCGGAAGG ] [+] EMBL AGA282219 [ TCGGCAATGTCGAGCACGGCAGATTTCTACCTGCGCTACTATGTGGGCCACAAGGGCAAGTTCGGGCACGAGTTTCTGGAGTTCGAGTTCCGGCCGGACGGGAAGCTGCGGTACGCCAACAACTCCAACTACAAAAACGACACCATGATCCGGAAGGAGGCGTACGTGCACCACGCGGTGATGGAGGAGCTGAAGCGCATCATACTCGACTCGGAAATTATGGCGGAAGACGATTCGCTGTGGCCACCGCCGGATCGCGTCGGGCGGCAGGAGTTGGAAATCGTGATAGGCGACGAGCACATTTCGTTCACCACGTCC AAGACGGGCTCGCTGGTGGACGTCAACCAGTCC ] [+] EMBL AGA285311 [ AATGTCGAGCACGGAAGATTTCTACCTGCGCTACTATGTGGGCCACAAGGGCAAGTTCGGGCACGAGTTTCTGGAGTTCGAGTTCCGGCCGGACGGGAAGCTGCGGTACGCCAACAACTCCAACTACAAAAACGACACCATGATCCGGAAGGAGGCGTACGTGCACCAAGCGGTGATGGAGGAGCTGAAGCGCATCATACTCGACTCGGAAATTATGGCGGAAGACGATTCGCTGTGGCC ] [-] EMBL AGA281463 [ GGCGTACGTGCACCAGGCGGTGATGGAGGAGCTGAAGCGCATCATACTCGACTCGGAAATTATGGCGGAAGACGATTCGCTGTGGCCACCGCCGGATCGCGTCGGGCGGCAGGAGTTGGAAATCGTGATAGGCGACGAGCACATTTCGTTCACCACGTCC AAGACGGGCTCGCTGGTGGACGTCAACCAGTCCAAAGATCCGGAAGGCCTGCGTGGCTTCTACTACCTCGTGCAGGATCTAAAGTGTTTGGTGTTTTCGCTCATCGGACTGCACTTCAAAATCAAACCCATCTAAGCAAGCCGGTCGCCACCCCGCCCCCCACACACAAACAAACAGACACACACACACGGTTTTGGTTGAATAACATGATAATATTTTCATTTTATTTACTAAAAAAAAGATTCTCTATCGGCGTGACGTGAAACCGCTCTTTGTAAGAATATAGAATAACAATAAAAACATCGTCCAGCGGAAGCTTTGGAACCATAAAAAACAAAAAAAAAAAAAAA] [-] EMBL AGA284016 [ GCGGCAGGAGTTGGAAATCGTGATAGGCGACGAGCACATTTCGTTCACCACGTCC AAGACGGGCTCGCTGGTGGACGTCAACCAGTCCAAAGATCCGGAAGGCCTGCGTGGCTTCTACT CAGGATCTAAAGTGTTTGGTGTTTTCGCTCATCGGACTGCACTTCAAAATCAAACCCATCTAAGCAAGCCGGTCGCCACCCCGCCCCCCACACACAAACAAATAGACACACACACATGGTTTTGGTGGAATAACATGATAATATTTTCATTTTATTTACTAAAAAAAAGATTCTCTATCGGCGTGACGTGAAACCGCTCTTTGTAAGAATATAGAATAACAATAAAAACATCGTCCAGCGGAAGCTTTGGAACCATAAAAAA ] [-] EMBL AGA280516 [ GCACATTTCGTTCACCACGTCC AAGACGGGCTCGCTGGTGGACGTCAACCAGTCCAAAGATCCGGAAGGCCTGCGTGGCTTCTACT CAGGATCTAAAGTGTTTGGTGTTTTCGCTCATCGGACTGCACTTCAAAATCAAACCCATCTAAGCAAGCCGGTCGCCACCCCGCCCCCCACACACAAACAAACAGACACACACACACGGTTTTGGTTGAATAACATGATAATATTTTCATTTTATTTACTAAAAAAAAGATTCTCTATCGGCGTGACGTGAAACCGCTCTTTGTAAGAATATAGAATAACAATAAAAACATCGTCCAGCGGAAGCTTTGGAACCCTCCAAAAAAAA ] consensusID : consensus_8269#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 526 fasta sequence [AAAAGACAANACCANNAAANGACNANGCAAGGAAGAAATAAAGCCGCGAGGAAGGAAAAGAAAGCCGCGAACCGAATCGGCAGTGTCGAGCGCGGAAGATTTCTACCTGCGCTACTACGTGGGCCACAAGGGCAAGTTCGGGCACGAGTTTCTGGAGTTCGAGTTCCGGCCGGACGGGAAGCTGCGGTACGCCAACAACTCCAACTACAAAAACGACACCATGATCCGGAAGGAGGCGTACGTGCACCAGGCGGTGATGGAGGAGCTGAAGCGCATCATACTCGACTCGGAAATTATGGCGGAAGACGATTCGCTGTGGCCACCGCCGGATCGCGTCGGGCGGCAGGAGTTGGAAATCGTGATAGGCGACGAGCACATTNTCGTTCACCACGTCCAAGACGGGCTCGCTGGTGGACGTCAACCAGTCCAAAGATCCCNGGGAGGCCTGCGTGGCTTTCTACTACCTCGTGCAGGATCTAAAGTGTTTGGTGTNNCGCCTNCATCGGACTGCACTTTCAAAATCGAA] [+] EMBL CF541484 [AAAAGACAANACCANNAAANGACNANGCAAGGAAGAAATAAAGCCGCGAGGAAGGAAAAGAAAGCCGCGAACCGAATCGGCAGTGTCGAGCGCGGAAGATTTCTACCTGCGCTACTACGTGGGCCACAAGGGCAAGTTCGGGCACGAGTTTCTGGAGTTCGAGTTCCGGCCGGACGGGAAGCTGCGGTACGCCAACAACTCCAACTACAAAAACGACACCATGATCCGGAAGGAGGCGTACGTGCACCAGGCGGTGATGGAGGAGCTGAAGCGCATCATACTCGACTCGGAAATTATGGCGGAAGACGATTCGCTGTGGCCACCGCCGGATCGCGTCGGGCGGCAGGAGTTGGAAATCGTGATAGGCGACGAGCACATTNTCGTTCACCACGTCCAAGACGGGCTCGCTGGTGGACGTCAACCAGTCCAAAGATCCCNGGGAGGCCTGCGTGGCTTTCTACTACCTCGTGCAGGATCTAAAGTGTTTGGTGTNNCGCCTNCATCGGACTGCACTTTCAAAATCGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8269#0 -------CCGGCAGCCACAGAGCCAGGCAGGAGAAATTT---GCCGCGAGGAAGGAAAAG 50 consensus_8269#1 AAAAGACAANACCANNAAANGACNANGCAAGGAAGAAATAAAGCCGCGAGGAAGGAAAAG 60 * * * * * *** * * * * ****************** consensus_8269#0 AAAGCCGCGAACCGAATCGGCAATGTCGAGCACGGAAGATTTCTACCTGCGCTACTATGT 110 consensus_8269#1 AAAGCCGCGAACCGAATCGGCAGTGTCGAGCGCGGAAGATTTCTACCTGCGCTACTACGT 120 ********************** ******** ************************* ** consensus_8269#0 GGGCCACAAGGGCAAGTTCGGGCACGAGTTTCTGGAGTTCGAGTTCCGGCCGGACGGGAA 170 consensus_8269#1 GGGCCACAAGGGCAAGTTCGGGCACGAGTTTCTGGAGTTCGAGTTCCGGCCGGACGGGAA 180 ************************************************************ consensus_8269#0 GCTGCGGTACGCCAACAACTCCAACTACAAAAACGACACCATGATCCGGAAGGAGGCGTA 230 consensus_8269#1 GCTGCGGTACGCCAACAACTCCAACTACAAAAACGACACCATGATCCGGAAGGAGGCGTA 240 ************************************************************ consensus_8269#0 CGTGCACCAGGCGGTGATGGAGGAGCTGAAGCGCATCATACTCGACTCGGAAATTATGGC 290 consensus_8269#1 CGTGCACCAGGCGGTGATGGAGGAGCTGAAGCGCATCATACTCGACTCGGAAATTATGGC 300 ************************************************************ consensus_8269#0 GGAAGACGATTCGCTGTGGCCACCGCCGGATCGCGTCGGGCGGCAGGAGTTGGAAATCGT 350 consensus_8269#1 GGAAGACGATTCGCTGTGGCCACCGCCGGATCGCGTCGGGCGGCAGGAGTTGGAAATCGT 360 ************************************************************ consensus_8269#0 GATAGGCGACGAGCACATTT-CGTTCACCACGTCCAAGACGGGCTCGCTGGTGGACGTCA 409 consensus_8269#1 GATAGGCGACGAGCACATTNTCGTTCACCACGTCCAAGACGGGCTCGCTGGTGGACGTCA 420 ******************* *************************************** consensus_8269#0 ACCAGTCCAAAGATCC--GGAAGGCCTGCGTGGCTT-CTACTACCTCGTGCAGGATCTAA 466 consensus_8269#1 ACCAGTCCAAAGATCCCNGGGAGGCCTGCGTGGCTTTCTACTACCTCGTGCAGGATCTAA 480 **************** ** *************** *********************** consensus_8269#0 AGTGTTTGGTGTTTT-CGCTCATCGGACTGCACTT-CAAAATCAAACCCATCTAAGCAAG 524 consensus_8269#1 AGTGTTTGGTGTNNCGCCTNCATCGGACTGCACTTTCAAAATCGAA-------------- 526 ************ * *************** ******* ** consensus_8269#0 CCGGTCGCCACCCCGCCCCCCACACACAAACAAACAGACACACACACACGGTTTTGGTGG 584 consensus_8269#1 ------------------------------------------------------------ consensus_8269#0 AATAACATGATAATATTTTCATTTTATTTACTAAAAAAAAGATTCTCTATCGGCGTGACG 644 consensus_8269#1 ------------------------------------------------------------ consensus_8269#0 TGAAACCGCTCTTTGTAAGAATATAGAATAACAATAAAAACATCGTCCAGCGGAAGCTTT 704 consensus_8269#1 ------------------------------------------------------------ consensus_8269#0 GGAACCATAAAAAACAAAAAAAAAAAAAAA 734 consensus_8269#1 ------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||