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Anopheles gambiae
cluster # 827 cluster # 827       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_827#0 length = 832 sequences # 1  
consensus_827#1 length = 606 sequences # 1  

consensusID : consensus_827#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 832
fasta sequence
                              [CCGCAGTTAGAGGCTGAGTCATAATTTCGGCATGATTTTCAAATGTTTTGTATTATTTTTTCAAAATCTCTTTTTTTTAATTTAAAAATCCAACCCGACAGATGTTGATCACTTACAAATTTGTACAATTTTATAATCTAAATCCAGTTCAAAATTTTGAAACCATACACCAAGCGTGAACACCAGGGACGAGGGATCGCAGGTTGAGCTGGACATCAATCAATCGGATGCAGTTCTCTAAATGGCCACAATGTGGCGCTGTATGTTTCAAGTATTANGCGTATGCATATTTGCGTTCCGTTTCCACAACTTACCACACAAATTAAGATCAAGAACAAATAGAGAGCATATGTAACTCGTTTCCTTATCAGCGTGCTAAGACCAATANGGTTACGTGTAGGAGGAATTCTAGAACTGGAACATACCAAAAGCCAAACAACGATACATTAGCTAGACAATATACTCTGCGCCTACTAACTTACATTCGTTTCATCAGCTATTTGGGTGAAATATTTCACCCGCGTTCGTCATCCTTCCCGCAAGAATATAGTGTAGCAAGAGATATTTATAGCCAACTATACAAACACTGANCACTCGGTAAGACTGCAAATAGGTGGAAACTAATCGGGGGGAAGCNAAGCGATAACAGCTGTCNTTGAAGGGTGCTCAACTTTTGGCCCCAGCGGATAACAGTGACACAACCGAACATACTANGCCTTTCAAGCTTGGCTTGANACAGTGGCGCTTTATCGGCTAANTTTCCTNANGCAACACAAGANTTACGTCTCACCGGTTATTGGGGNACGATACTNTCGGACTGGTGNCTACCNAG]

[+] EMBL AL694764             [CCGCAGTTAGAGGCTGAGTCATAATTTCGGCATGATTTTCAAATGTTTTGTATTATTTTTTCAAAATCTCTTTTTTTTAATTTAAAAATCCAACCCGACAGATGTTGATCACTTACAAATTTGTACAATTTTATAATCTAAATCCAGTTCAAAATTTTGAAACCATACACCAAGCGTGAACACCAGGGACGAGGGATCGCAGGTTGAGCTGGACATCAATCAATCGGATGCAGTTCTCTAAATGGCCACAATGTGGCGCTGTATGTTTCAAGTATTANGCGTATGCATATTTGCGTTCCGTTTCCACAACTTACCACACAAATTAAGATCAAGAACAAATAGAGAGCATATGTAACTCGTTTCCTTATCAGCGTGCTAAGACCAATANGGTTACGTGTAGGAGGAATTCTAGAACTGGAACATACCAAAAGCCAAACAACGATACATTAGCTAGACAATATACTCTGCGCCTACTAACTTACATTCGTTTCATCAGCTATTTGGGTGAAATATTTCACCCGCGTTCGTCATCCTTCCCGCAAGAATATAGTGTAGCAAGAGATATTTATAGCCAACTATACAAACACTGANCACTCGGTAAGACTGCAAATAGGTGGAAACTAATCGGGGGGAAGCNAAGCGATAACAGCTGTCNTTGAAGGGTGCTCAACTTTTGGCCCCAGCGGATAACAGTGACACAACCGAACATACTANGCCTTTCAAGCTTGGCTTGANACAGTGGCGCTTTATCGGCTAANTTTCCTNANGCAACACAAGANTTACGTCTCACCGGTTATTGGGGNACGATACTNTCGGACTGGTGNCTACCNAG]


>consensus_827#0 CCGCAGTTAGAGGCTGAGTCATAATTTCGGCATGATTTTCAAATGTTTTGTATTATTTTT TCAAAATCTCTTTTTTTTAATTTAAAAATCCAACCCGACAGATGTTGATCACTTACAAAT TTGTACAATTTTATAATCTAAATCCAGTTCAAAATTTTGAAACCATACACCAAGCGTGAA CACCAGGGACGAGGGATCGCAGGTTGAGCTGGACATCAATCAATCGGATGCAGTTCTCTA AATGGCCACAATGTGGCGCTGTATGTTTCAAGTATTANGCGTATGCATATTTGCGTTCCG TTTCCACAACTTACCACACAAATTAAGATCAAGAACAAATAGAGAGCATATGTAACTCGT TTCCTTATCAGCGTGCTAAGACCAATANGGTTACGTGTAGGAGGAATTCTAGAACTGGAA CATACCAAAAGCCAAACAACGATACATTAGCTAGACAATATACTCTGCGCCTACTAACTT ACATTCGTTTCATCAGCTATTTGGGTGAAATATTTCACCCGCGTTCGTCATCCTTCCCGC AAGAATATAGTGTAGCAAGAGATATTTATAGCCAACTATACAAACACTGANCACTCGGTA AGACTGCAAATAGGTGGAAACTAATCGGGGGGAAGCNAAGCGATAACAGCTGTCNTTGAA GGGTGCTCAACTTTTGGCCCCAGCGGATAACAGTGACACAACCGAACATACTANGCCTTT CAAGCTTGGCTTGANACAGTGGCGCTTTATCGGCTAANTTTCCTNANGCAACACAAGANT TACGTCTCACCGGTTATTGGGGNACGATACTNTCGGACTGGTGNCTACCNAG



consensusID : consensus_827#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 606
fasta sequence
                              [AAATTTTGAAACCATACACCAAGCGGAACACCAGGGACGAGGATCGAGGTTGAGTGGAATCAATCAATCGGATGAGTTTTAAATGGCCACAATGTGGCGCTGTATGTTTCAAGTTTTGCGTTGCATTTGCGTTCCGTTTCCACACTTCCACACAAATTAAATCAAGAACAAATAGAGAGCATATGTAATCGTTTCCTTATCGGCGTGCTAAGACAATAAGGTTACGTGTAGGAGGAATTTAGAACTGGAACATACCAAAAGCCAAACAACGATACATTAGCTAGACAATATACTCTGCGCCTACTAGCATACATTAGTTTCATCGCTATTTGGGTGAAATATTTCACCCGCGTTCGTCATCCTTCCCGCAAGAATATAGTGTAGAAGAGATATTTTAGCCAATATACAACACTGACACTCGGTAAGACTGAAATAGTGGAAACTATCGGCGGAAGCAACGATACAGCTGTTTGAAGGTGAAGGTGCTCACTTTGCCCAGCGATACAGTGACACACGACATACTACGCCTTCAAGCTGCTGACACGTGCGCTTTCCGCTAACTTCCTACGCAACAAGACTTACTCTACCGCATTTTGGGATACGATA]

[+] EMBL AGA281293            [AAATTTTGAAACCATACACCAAGCGGAACACCAGGGACGAGGATCGAGGTTGAGTGGAATCAATCAATCGGATGAGTTTTAAATGGCCACAATGTGGCGCTGTATGTTTCAAGTTTTGCGTTGCATTTGCGTTCCGTTTCCACACTTCCACACAAATTAAATCAAGAACAAATAGAGAGCATATGTAATCGTTTCCTTATCGGCGTGCTAAGACAATAAGGTTACGTGTAGGAGGAATTTAGAACTGGAACATACCAAAAGCCAAACAACGATACATTAGCTAGACAATATACTCTGCGCCTACTAGCATACATTAGTTTCATCGCTATTTGGGTGAAATATTTCACCCGCGTTCGTCATCCTTCCCGCAAGAATATAGTGTAGAAGAGATATTTTAGCCAATATACAACACTGACACTCGGTAAGACTGAAATAGTGGAAACTATCGGCGGAAGCAACGATACAGCTGTTTGAAGGTGAAGGTGCTCACTTTGCCCAGCGATACAGTGACACACGACATACTACGCCTTCAAGCTGCTGACACGTGCGCTTTCCGCTAACTTCCTACGCAACAAGACTTACTCTACCGCATTTTGGGATACGATA]


>consensus_827#1 AAATTTTGAAACCATACACCAAGCGGAACACCAGGGACGAGGATCGAGGTTGAGTGGAAT CAATCAATCGGATGAGTTTTAAATGGCCACAATGTGGCGCTGTATGTTTCAAGTTTTGCG TTGCATTTGCGTTCCGTTTCCACACTTCCACACAAATTAAATCAAGAACAAATAGAGAGC ATATGTAATCGTTTCCTTATCGGCGTGCTAAGACAATAAGGTTACGTGTAGGAGGAATTT AGAACTGGAACATACCAAAAGCCAAACAACGATACATTAGCTAGACAATATACTCTGCGC CTACTAGCATACATTAGTTTCATCGCTATTTGGGTGAAATATTTCACCCGCGTTCGTCAT CCTTCCCGCAAGAATATAGTGTAGAAGAGATATTTTAGCCAATATACAACACTGACACTC GGTAAGACTGAAATAGTGGAAACTATCGGCGGAAGCAACGATACAGCTGTTTGAAGGTGA AGGTGCTCACTTTGCCCAGCGATACAGTGACACACGACATACTACGCCTTCAAGCTGCTG ACACGTGCGCTTTCCGCTAACTTCCTACGCAACAAGACTTACTCTACCGCATTTTGGGAT ACGATA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_827#0      CCGCAGTTAGAGGCTGAGTCATAATTTCGGCATGATTTTCAAATGTTTTGTATTATTTTT 60
consensus_827#1      ------------------------------------------------------------
                                                                                 

consensus_827#0      TCAAAATCTCTTTTTTTTAATTTAAAAATCCAACCCGACAGATGTTGATCACTTACAAAT 120
consensus_827#1      ------------------------------------------------------------
                                                                                 

consensus_827#0      TTGTACAATTTTATAATCTAAATCCAGTTCAAAATTTTGAAACCATACACCAAGCGTGAA 180
consensus_827#1      -------------------------------AAATTTTGAAACCATACACCAAGCG-GAA 28
                                                    ************************* ***

consensus_827#0      CACCAGGGACGAGGGATCGCAGGTTGAGCTGGACATCAATCAATCGGATGCAGTTCTCTA 240
consensus_827#1      CACCAGGGACGAGG-ATCG-AGGTTGAG-TGGA-ATCAATCAATCGGATG-AGTTTT--A 81
                     ************** **** ******** **** **************** **** *  *

consensus_827#0      AATGGCCACAATGTGGCGCTGTATGTTTCAAGTATTANGCGTATGCATATTTGCGTTCCG 300
consensus_827#1      AATGGCCACAATGTGGCGCTGTATGTTTCAAGTTTTGCGT-----TGCATTTGCGTTCCG 136
                     ********************************* **  *         ************

consensus_827#0      TTTCCACAACTTACCACACAAATTAAGATCAAGAACAAATAGAGAGCATATGTAACTCGT 360
consensus_827#1      TTTCCACA--CTTCCACACAAATTAA-ATCAAGAACAAATAGAGAGCATATGTAA-TCGT 192
                     ********   * ************* **************************** ****

consensus_827#0      TTCCTTATCAGCGTGCTAAGACCAATANGGTTACGTGTAGGAGGAATTCTAGAACTGGAA 420
consensus_827#1      TTCCTTATCGGCGTGCTAAGAC-AATAAGGTTACGTGTAGGAGGAATT-TAGAACTGGAA 250
                     ********* ************ **** ******************** ***********

consensus_827#0      CATACCAAAAGCCAAACAACGATACATTAGCTAGACAATATACTCTGCGCCTACTAACTT 480
consensus_827#1      CATACCAAAAGCCAAACAACGATACATTAGCTAGACAATATACTCTGCGCCTACTAGCAT 310
                     ******************************************************** * *

consensus_827#0      ACATTCGTTTCATCAGCTATTTGGGTGAAATATTTCACCCGCGTTCGTCATCCTTCCCGC 540
consensus_827#1      ACATTAGTTTCATC-GCTATTTGGGTGAAATATTTCACCCGCGTTCGTCATCCTTCCCGC 369
                     ***** ******** *********************************************

consensus_827#0      AAGAATATAGTGTAGCAAGAGATATTTATAGCCAACTATACAAACACTGANCACTCGGTA 600
consensus_827#1      AAGAATATAGTGTAG-AAGAGATATTT-TAGCCAA-TATACAA-CACTGAC-ACTCGGTA 424
                     *************** *********** ******* ******* ******  ********

consensus_827#0      AGACTGCAAATAGGTGGAAACTAATCGGGGGGAAGCNAAGCGATAACAGCTGTCNTTGAA 660
consensus_827#1      AGACTG-AAATAG-TGGAAACTATC--GGCGGAAGCAACGATACAGCTGTTTGAAGGTGA 480
                     ****** ****** *********    ** ****** * *  * * * * *        *

consensus_827#0      GGGTGCTCAACTTTTGGCCCCAGCGGATAACAGTGACACAACCGAACATACTANGCCTTT 720
consensus_827#1      AGGTGCTCA--CTTTG--CCCAGCGA--TACAGTGACACAC---GACATACTACGCCTT- 530
                      ********   ****  *******    ***********     ******** ***** 

consensus_827#0      CAAGCTTGGCTTGANACAGTGGCGCTTTATCGGCTAANTTTCCTNANGCAACACAAGANT 780
consensus_827#1      CAAGCTG---CTGACAC----GTGCGCTTTCCGCTAACTT--CCTACGCAACA--AGACT 579
                     ******     *** **    * **  * ** ***** **  *  * ******  *** *

consensus_827#0      TACGTCTCACCGGTTATTGGGGNACGATACTNTCGGACTGGTGNCTACCNAG 832
consensus_827#1      TAC--TCTACCGCATTTTGGGATACGATA----------------------- 606
                     ***     ****  * *****  ******                       




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)