These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_827#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 832 fasta sequence [CCGCAGTTAGAGGCTGAGTCATAATTTCGGCATGATTTTCAAATGTTTTGTATTATTTTTTCAAAATCTCTTTTTTTTAATTTAAAAATCCAACCCGACAGATGTTGATCACTTACAAATTTGTACAATTTTATAATCTAAATCCAGTTCAAAATTTTGAAACCATACACCAAGCGTGAACACCAGGGACGAGGGATCGCAGGTTGAGCTGGACATCAATCAATCGGATGCAGTTCTCTAAATGGCCACAATGTGGCGCTGTATGTTTCAAGTATTANGCGTATGCATATTTGCGTTCCGTTTCCACAACTTACCACACAAATTAAGATCAAGAACAAATAGAGAGCATATGTAACTCGTTTCCTTATCAGCGTGCTAAGACCAATANGGTTACGTGTAGGAGGAATTCTAGAACTGGAACATACCAAAAGCCAAACAACGATACATTAGCTAGACAATATACTCTGCGCCTACTAACTTACATTCGTTTCATCAGCTATTTGGGTGAAATATTTCACCCGCGTTCGTCATCCTTCCCGCAAGAATATAGTGTAGCAAGAGATATTTATAGCCAACTATACAAACACTGANCACTCGGTAAGACTGCAAATAGGTGGAAACTAATCGGGGGGAAGCNAAGCGATAACAGCTGTCNTTGAAGGGTGCTCAACTTTTGGCCCCAGCGGATAACAGTGACACAACCGAACATACTANGCCTTTCAAGCTTGGCTTGANACAGTGGCGCTTTATCGGCTAANTTTCCTNANGCAACACAAGANTTACGTCTCACCGGTTATTGGGGNACGATACTNTCGGACTGGTGNCTACCNAG] [+] EMBL AL694764 [CCGCAGTTAGAGGCTGAGTCATAATTTCGGCATGATTTTCAAATGTTTTGTATTATTTTTTCAAAATCTCTTTTTTTTAATTTAAAAATCCAACCCGACAGATGTTGATCACTTACAAATTTGTACAATTTTATAATCTAAATCCAGTTCAAAATTTTGAAACCATACACCAAGCGTGAACACCAGGGACGAGGGATCGCAGGTTGAGCTGGACATCAATCAATCGGATGCAGTTCTCTAAATGGCCACAATGTGGCGCTGTATGTTTCAAGTATTANGCGTATGCATATTTGCGTTCCGTTTCCACAACTTACCACACAAATTAAGATCAAGAACAAATAGAGAGCATATGTAACTCGTTTCCTTATCAGCGTGCTAAGACCAATANGGTTACGTGTAGGAGGAATTCTAGAACTGGAACATACCAAAAGCCAAACAACGATACATTAGCTAGACAATATACTCTGCGCCTACTAACTTACATTCGTTTCATCAGCTATTTGGGTGAAATATTTCACCCGCGTTCGTCATCCTTCCCGCAAGAATATAGTGTAGCAAGAGATATTTATAGCCAACTATACAAACACTGANCACTCGGTAAGACTGCAAATAGGTGGAAACTAATCGGGGGGAAGCNAAGCGATAACAGCTGTCNTTGAAGGGTGCTCAACTTTTGGCCCCAGCGGATAACAGTGACACAACCGAACATACTANGCCTTTCAAGCTTGGCTTGANACAGTGGCGCTTTATCGGCTAANTTTCCTNANGCAACACAAGANTTACGTCTCACCGGTTATTGGGGNACGATACTNTCGGACTGGTGNCTACCNAG] consensusID : consensus_827#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 606 fasta sequence [AAATTTTGAAACCATACACCAAGCGGAACACCAGGGACGAGGATCGAGGTTGAGTGGAATCAATCAATCGGATGAGTTTTAAATGGCCACAATGTGGCGCTGTATGTTTCAAGTTTTGCGTTGCATTTGCGTTCCGTTTCCACACTTCCACACAAATTAAATCAAGAACAAATAGAGAGCATATGTAATCGTTTCCTTATCGGCGTGCTAAGACAATAAGGTTACGTGTAGGAGGAATTTAGAACTGGAACATACCAAAAGCCAAACAACGATACATTAGCTAGACAATATACTCTGCGCCTACTAGCATACATTAGTTTCATCGCTATTTGGGTGAAATATTTCACCCGCGTTCGTCATCCTTCCCGCAAGAATATAGTGTAGAAGAGATATTTTAGCCAATATACAACACTGACACTCGGTAAGACTGAAATAGTGGAAACTATCGGCGGAAGCAACGATACAGCTGTTTGAAGGTGAAGGTGCTCACTTTGCCCAGCGATACAGTGACACACGACATACTACGCCTTCAAGCTGCTGACACGTGCGCTTTCCGCTAACTTCCTACGCAACAAGACTTACTCTACCGCATTTTGGGATACGATA] [+] EMBL AGA281293 [AAATTTTGAAACCATACACCAAGCGGAACACCAGGGACGAGGATCGAGGTTGAGTGGAATCAATCAATCGGATGAGTTTTAAATGGCCACAATGTGGCGCTGTATGTTTCAAGTTTTGCGTTGCATTTGCGTTCCGTTTCCACACTTCCACACAAATTAAATCAAGAACAAATAGAGAGCATATGTAATCGTTTCCTTATCGGCGTGCTAAGACAATAAGGTTACGTGTAGGAGGAATTTAGAACTGGAACATACCAAAAGCCAAACAACGATACATTAGCTAGACAATATACTCTGCGCCTACTAGCATACATTAGTTTCATCGCTATTTGGGTGAAATATTTCACCCGCGTTCGTCATCCTTCCCGCAAGAATATAGTGTAGAAGAGATATTTTAGCCAATATACAACACTGACACTCGGTAAGACTGAAATAGTGGAAACTATCGGCGGAAGCAACGATACAGCTGTTTGAAGGTGAAGGTGCTCACTTTGCCCAGCGATACAGTGACACACGACATACTACGCCTTCAAGCTGCTGACACGTGCGCTTTCCGCTAACTTCCTACGCAACAAGACTTACTCTACCGCATTTTGGGATACGATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_827#0 CCGCAGTTAGAGGCTGAGTCATAATTTCGGCATGATTTTCAAATGTTTTGTATTATTTTT 60 consensus_827#1 ------------------------------------------------------------ consensus_827#0 TCAAAATCTCTTTTTTTTAATTTAAAAATCCAACCCGACAGATGTTGATCACTTACAAAT 120 consensus_827#1 ------------------------------------------------------------ consensus_827#0 TTGTACAATTTTATAATCTAAATCCAGTTCAAAATTTTGAAACCATACACCAAGCGTGAA 180 consensus_827#1 -------------------------------AAATTTTGAAACCATACACCAAGCG-GAA 28 ************************* *** consensus_827#0 CACCAGGGACGAGGGATCGCAGGTTGAGCTGGACATCAATCAATCGGATGCAGTTCTCTA 240 consensus_827#1 CACCAGGGACGAGG-ATCG-AGGTTGAG-TGGA-ATCAATCAATCGGATG-AGTTTT--A 81 ************** **** ******** **** **************** **** * * consensus_827#0 AATGGCCACAATGTGGCGCTGTATGTTTCAAGTATTANGCGTATGCATATTTGCGTTCCG 300 consensus_827#1 AATGGCCACAATGTGGCGCTGTATGTTTCAAGTTTTGCGT-----TGCATTTGCGTTCCG 136 ********************************* ** * ************ consensus_827#0 TTTCCACAACTTACCACACAAATTAAGATCAAGAACAAATAGAGAGCATATGTAACTCGT 360 consensus_827#1 TTTCCACA--CTTCCACACAAATTAA-ATCAAGAACAAATAGAGAGCATATGTAA-TCGT 192 ******** * ************* **************************** **** consensus_827#0 TTCCTTATCAGCGTGCTAAGACCAATANGGTTACGTGTAGGAGGAATTCTAGAACTGGAA 420 consensus_827#1 TTCCTTATCGGCGTGCTAAGAC-AATAAGGTTACGTGTAGGAGGAATT-TAGAACTGGAA 250 ********* ************ **** ******************** *********** consensus_827#0 CATACCAAAAGCCAAACAACGATACATTAGCTAGACAATATACTCTGCGCCTACTAACTT 480 consensus_827#1 CATACCAAAAGCCAAACAACGATACATTAGCTAGACAATATACTCTGCGCCTACTAGCAT 310 ******************************************************** * * consensus_827#0 ACATTCGTTTCATCAGCTATTTGGGTGAAATATTTCACCCGCGTTCGTCATCCTTCCCGC 540 consensus_827#1 ACATTAGTTTCATC-GCTATTTGGGTGAAATATTTCACCCGCGTTCGTCATCCTTCCCGC 369 ***** ******** ********************************************* consensus_827#0 AAGAATATAGTGTAGCAAGAGATATTTATAGCCAACTATACAAACACTGANCACTCGGTA 600 consensus_827#1 AAGAATATAGTGTAG-AAGAGATATTT-TAGCCAA-TATACAA-CACTGAC-ACTCGGTA 424 *************** *********** ******* ******* ****** ******** consensus_827#0 AGACTGCAAATAGGTGGAAACTAATCGGGGGGAAGCNAAGCGATAACAGCTGTCNTTGAA 660 consensus_827#1 AGACTG-AAATAG-TGGAAACTATC--GGCGGAAGCAACGATACAGCTGTTTGAAGGTGA 480 ****** ****** ********* ** ****** * * * * * * * * consensus_827#0 GGGTGCTCAACTTTTGGCCCCAGCGGATAACAGTGACACAACCGAACATACTANGCCTTT 720 consensus_827#1 AGGTGCTCA--CTTTG--CCCAGCGA--TACAGTGACACAC---GACATACTACGCCTT- 530 ******** **** ******* *********** ******** ***** consensus_827#0 CAAGCTTGGCTTGANACAGTGGCGCTTTATCGGCTAANTTTCCTNANGCAACACAAGANT 780 consensus_827#1 CAAGCTG---CTGACAC----GTGCGCTTTCCGCTAACTT--CCTACGCAACA--AGACT 579 ****** *** ** * ** * ** ***** ** * * ****** *** * consensus_827#0 TACGTCTCACCGGTTATTGGGGNACGATACTNTCGGACTGGTGNCTACCNAG 832 consensus_827#1 TAC--TCTACCGCATTTTGGGATACGATA----------------------- 606 *** **** * ***** ****** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||