These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8295#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 991 fasta sequence [TTTTTTCTTAAATTAAAAGATTGTGTTTGGTATTTTATTGATATCGGACTGCATTTTTCCCATTCAGGCCAATTACGACACACATATCCGTTAAAGCATTGGTCACATACATACTTATACGAGTTGCATTTGCCATATGTATTTATGCTTGCAATAACTTTCGTCTACAATTCTCGAAATTGTTATTCATGAGATATTGGTTCTAGCAACAAAAACGACAGTGGGAACATTCAACAATTAGATCTACGCAATGTGATACTGGATAGGCTCCTACACTCCACTAGTCGTACGAATCCAGTAACGCGCACTTGCCACACGTGCGTACACCCCCGGATAGCCTGCCAGAGCGCATTCGTGGCCCCAAGAAATGACGCCGATCAGCTTACCCTCAGCAACGAACGGACCGCCCGAAT-CTTGTCGACACGTATCTTGACCGCCCTGTTTGTACCCCGCAC-AAAACATTTGATCCGTAATGCCACCGTACATGGACTGGTAGGCTTTGTTACATTCCTGCTGGTTAACGGTCGGTACGTTTGTTGCTCGTAGAACATCGTTCGAATCGGCCTCACTCAGTGTCAAACCCCAGCCAGAGACGATTCCCATTGTTCCTTCCTCGATCGGTTCATCCTGTTCCGGCAGTCCAATGGGTTGAACCTTTTCGCTAAACGTAAGCTCGTTTTTCAACTCCAGTGGGGCAATGTCGTAGTTGTTCTTGCTACCATGCATAGGATGAGGCACAATACGAGCTACACGTACGACGGTACCACCGGATGCATGTTCGGACGATCCTACGCGGACGGTTGGCTTCGAGGGTGCGTTATCGTTGATGCAGTTTGCTGCGGTTAGGATCCACTTGCTACTCAGGATAGAGCCTCCACAGTTATGATCGTCGTCGTACTGTAGTTAAACCTGAAGAGGGTGCATCCGAGAAATCGATCACAAATCCACCGACAATCCGTTTGCCAGCCAGGTATGGCGGACGCGTGGGCGG] [+] EMBL CNS08P8P [TTTTTTCTTAAATAAAAAGATTGTGTTTGGTATTTTATTGATATCGGACTGCATTTTTCCCATTCAGGCCAATTACGACACACATATCCGTTAAAGCATTGGTCACATACATACTTATACGAGTTGCATTTGCCATATGTATTTATGCTTGCAATAACTTTCGTCTACAATTCTCGAAATTGTTATTCATGAGAAATTGGTTCTAGCAACAAAAACGACAGTGGGAACATTCAACAATTAGATCTACGCAATGTGATACTGGATAGGCTCCTACACTCCACTAGTCGTACGAATCCAGTAACGCGCACTTGCCACACGTGCGTACACCCCCGGATAGCCTGCCAGAGCGCATTCGTGGCCCCAAGAAATGACGCCGATCAGCTTACCCTCAGCAACGAACGGACCGCCCGAAT CTTGTCGACACGTATCTTGATCGCCCTGTTTGTACCCCGCAC AAAACATTTTTTCCGTAATGCCACCGTACATGGACTGGTAGGCTTTGTTACATTCCTGCTGGTTAACGGTCGGTACGTTTGTTGCTCGTAGAACATCGTTCGAATCGGCCTCACTCAGTGTCAAACCCCAGCCAGAGACGATTCCCATTGTTCCTTCCTCGATCGGTTCATCCTGTTCCGGCAGTCCAATGGGTTGAACCTTTAAAAAAAAAGTAAGCTCGTTTTTCAACTCCAGTGGGGCAATGTCGTAGTTGTTCTTGCTACCATGCATAGGATGAGGCACAATACGAGCTACACGTACGACGGTACCACCGGATGCATGTTCGGACGATCCTACGCGGACGGTTGGCTTCGAGGGTGCGTTATCGTTGATGCAGTTTGCTGCGGTTAGGATCCACTTGCTACTCAGGATAGAGCCTCCACAGTTATGATCGTCGTCGTACTGTAGTTAAACCTGAAGAGGGTGCATCCGAGAAATCGATCACAAATCCACCGACAATCC ] [+] EMBL CNS08QCN [ TTTACTACACTTTAAAGATTGTGTTTGGTATTTTATTGATATCGGACTGCATTTTTCCCATTCAGGCCAATTACGACACACATATCCGTTAAAGCATTGGTCACATACATACTTATACGAGTTGCATTTGCCATATGTATTTATGCTTGCAATAACTTTCGTCTACAATTCTCGAAATTGTTATTCATGAGATATTGGTTCTAGCAACAAAAACGACAGTGGGAACATTCAACAATTAGATCTACGCAATGTGATACTGGATAGGCCCCTACACCCCACTAGTCGTACGAATCCAGTAACGCGCACTTGCCACACGTGCGT ] [+] EMBL CNS092H7 [ ttgttTTAGAAGATTGTGTTTGGTATTTTATTGATATCGGACTGCATTTTT CCATTCAGGCCAATTACGACACACATATCCGTTAAAGCATTGGTCACATACATACTTATACGAGTTGCATTTGCCATATGTATTTATGCTTGCAATAACTTTCGTCTACAATTCTCGAAATTGTTATTCATGAGATATTGGTTCTAGCAACAAAAACGACAGTGGGAACATTCAACAATTAGATCTACGCAATGTGATACTGGATAGGCTCCTACACTCCACTAGTCGTACGAATCCAGTCACGCGCACTTGCCACACGTGCGTACACCCCCGGATAGCCTGCCAGAGCGCATTCGTGGCCCCAAGAAATGACGCCGATCAGCTTACCCTCAGCAACGAACGGACCGCCCGAAT CTTGTCGACACGTATCTTGACCGCCCTGTTTGTACCCCGCAC AAAACATTTGATCCGTAATGCCACCGTACATGGACTGGTAGGCTTTGTTACATTCCTGCTGGTTAACGGTCGGTACGTTTGTTGCTCGTAGAACATCGTTCGAATCGGCCTCACTCAGTGTCAAACCCCAGCCAGAAACGATTCCCATTGTTCCTTCCTCGATCGGTTCATCCTGTCCCGGCAGTACAATGGGTTGAACCTTTTCGCTAAACGTAAGCTCGTTTTTCAACTCCAGTGGGGCAATGTCGTAGTTGTTCTTGCTACCATGCATAGGATGAGGCACAATACGAGCGACACGTACGAGGGTACCACCGGATGCATGTCCGGACGATCCTACGCGGACGGTTGGCTTCGAGGGTGCGTAATCGTTGATGC ] [+] EMBL CNS08CMX [ GATTGTTTTTGGTATTTTATTGATATCGGACTGCATTTTT CCATTCAGGCCAATTACGACACACATATCCGTTAAAGCATTGGTCACATACATACTTATACGAGTTGCATTTGCCATATGTATTTATGCTTGCAATAACTTTCGTCTACAATTCTCGAAATTGTTATTCATGAGATATTGGTTCTAGCAACAAAAACGACAGTGGGAACATTCAACAATTAGATCTACGCAATGTGATACTGGATAGGCTCCTACACTCCACTAGTCGTACGAATCCAGTCACGCGCACTTGCCACACGTGCGTTCACCCCCGGATAGCCTGCCAGAACGCATTCGTGGCCCCAAGAAATGACGCCGATCAGCTTACCCTCAGCAACGAACGGACCGCCCGAAT TTTGTGGACACGTATCTTGACCGCCCTGTTTGTACCCCGCAC AAAACATTTGATCCGTAATGCCACCGTACATGGACTGGTAGGCTTTGTTACATTCCTGCGGGTTAACGGTCGGTACGTTTTTGGCTCGTAGAACATCGTTCGAATCGGCCTCACTCAGTGTCAAACCCCAGCCAGAAACGATTCCCATTGTTCCTTCCTCGATCGGTTCATCCTGTTCCGGCAGTCCAATGGGTTGAACCTTTTCGCTAAACGTAAGCGCGTTTTTCAACTCCAGTGGGGCAATTTCGTAGTTGTTCTTGCTACCATGCATAGGATGAGGCACAATACGAGCGACACGTACGAGGGTACCACCGGATGCATGTTCGGACGATCCTACG ] [+] EMBL CNS08GFL [ TGTGTTTGGTATTTTATTGATATCGGACTGCATTTTTCCCATTCAGGCCAATAACGACACACATATCCGTTAAAGCATTGGTCACATACATACTTATACGAGTTGCATTTGCCATATGTATTTATGCTTGCAATAACTTTCGTCTACAATTCTCGAAATTGTTATTCATGAGAAATTGGTTCTAGCAACAAAAACGACAGTGGGAACAT ] [-] EMBL BM597911 [ ACGGACCGCCCGAATCCTTGTCGACACGTATCTTGACCGCCCTGTTTGTACCCCGCACAAAAACATTTGATCCGTAATGCCACCGTACATGGACTGGTAGGCTTTGTTACATTCCTGCTGGTTAACGGTCGGTACGTTTGTTGCTCGTAGAACATCGTTCGAATCGGCCTCACTCAGTGTCAAACCCCAGCCAGAGACGATTCCCATTGTTCCTTCCTCGATCGGTTCATCCTGTTCCGGCAGTGCAATGGGTTGAACCTTTTCGCTAAACGTAAGCTCGTTTTTCAACTCCAGTAGGGCAATGTCGTAGTTGTTCTTGCTACCATGCATAGGATGAGGCACAATACGAGCTACACGTACGACGGTACCACCGGATGCATGTTCGGACGATCCTACGCGGACGGTTGGCTTCGAGGGTGCGTTATCGTTGATGCAGTGTGCTGCGGTTAGGATCCACTTGCTACTCAGGATAGAGCCTCCACAGTTATGATCGTCGTCGTACTGTAGTGAAACCTG ATAGGGTGCATCCGAGATATCGATCACAAATCCACCGACAATCCGTTTGCCAGCCAGGTATGGCGGACGCGTGGGCGG] consensusID : consensus_8295#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 919 fasta sequence [TTTGTTTTTTTTTTTGTGTTTGGTATTTTATTGATATCGGACTGCATTTTTCCCATTCAGGCCAATTACGACACACATATCCGTTAAAGCATTGGTCACATACATACTTATACGAGTTGCATTTGCCATATGTATTTATGCTTGCAATAACTTTCGTCTACAATTCTCGAAATTGTTATTCATGAGATATTGGTTCTAGCAACAAAAACGACAGTTGGAACATTCAACAATTAGATCTACGCAATGTGATACTGGATAGGCTCCTACACTCCACTAGTCGTACGAATCCAGTCACGCGCACTTGCCACACGTGCGTACACCCCCGGATAGCCTGCCAGAGCGCATTCGTGGCCCCAAGAAATGACGCCGATCAGCTTACCCTCAGCAACGAACGGACCGCCCGAATCTTGTCGACACGTATCTTGACCGCCCTGTTTGTACCCCGCACAAAACATTTGATCCGTAATGCCA-CCGTACATGGACTGGTAGGCTTTGTTACATTCCTGCTGGTTAACGGTCGGTACGTTTGTTGCTCGTAGAACATCGTTCGAATCGGCCTCACTCAGTGTCAAACCCCAGCCAGAGACGATTCCCATTGTTCCTTCCTCGATCGGTTCATCCTGTTCCGGCAGTGCAATGGGTTGAACCTTTTCGCTAAACGTAAGCTCGTTTTTCAACTCCAGTAGGGCAATGTCGTAGTTGTTCTTGCTACCATGCATAGGATGAGGCACAATACGAGCTACACGTACGACGGTACCACCGGATGCATGTTCGGACGATCCTACGCGGACGGTTGGCTTCGAGGGTGCGTTATCGTTGATGCAGTTTGCTGCGGTTAGGATCCACTTGCTACTCAGGATAGAGCCTCCACAGTTATGATCGTCGTCGTACTGTAGTGAAACCTGGATAGGGTGCATCC] [+] EMBL CNS08N1J [TTTGTTTTTTTTTTTGTGTTTGGTATTTTATTGATATCGGACTGCATTTTTCCCATTCAGGCCAATTACGACACACATATCCGTTAAAGCATTGGTCACATACATACTTATACGAGTTGCATTTGCCATATGTATTTATGCTTGCAATAACTTTCGTCTACAATTCTCGAAATTGTTATTCATGAGATATTGGTTCTAGCAACAAAAACGACAGTTGGAACATTCAACAATTAGATCTACGCAATGTGATACTGGATAGGCTCCTACACTCCACTAGTCGTACGAATCCAGTCACGCGCACTTGCCACACGTGCGTACACCCCCGGATAGCCTGCCAGAGCGCATTCGTGGCCCCAAGAAATGACGCCGATCAGCTTACCCTCAGCAACGAACGGACCGCCCGAATCTTGTCGACACGTATCTTGACCGCCCTGTTTGTACCCCGCACAAAACATTTGATCCGTAATGCCA CCGTACATGGACTGGTAGGCTTTGTTACATTCCTGCTGGTTAACGGTCGGTACGTTTGTTGCTCGTAGAACATCGTTCGAATCGGCCTCACTCAGTGTCAAACCCCAGCCAGAGACGATTCCCATTGTTCCTTCCTCGATCGGTTCATCCTGTTCCGGCAGTGCAATGGGTTGAACCTTTTCGCTAAACGTAAGCTCGTTTTTCAACTCCAGTAGGGCAATGTCGTAGTTGTTCTTGCTACCATGCATAGGATGAGGCACAATACGAGCTACACGTACGACGGTACCACCGGATGCATGTTCGGACGATCCTACGCGGACGGTTGGCTTCGAGGGTGCGTTATCGTTGATGCAGTTTGCTGCGGTTAGGATCCACTTGCTACTCAGGATAGAGCCTCCACAGTTATGATCGTCGTCGTACTGTAGTGAAACCTGGATAGGGTGCATCC] [+] EMBL CNS09OHG [ TATTGATATCGGACTGCATTTTTCCCATTCAGGCCAATTACGACACACATATCCGTTAAAGCATTGGTCACATACATACTTATACGAGTTGCATTTGCCATATGTATTTATGCTTGCAATAACTTTCGTCTACAATTCTCGAAATTGTTATTCATGAGATATTGGTTCTAGCAACAAAAACGACAGTTGGAACATTCAACAATTAGATCTACGCAATGTGATACTGGATAGGCTCCTACACTCCACTAGTCGTACGAATCCAGTCACGCGCACTTGCCACACGTGCGTACACCCCCGGATAGCCTGCCAGAGCGCATTCGTGGCCCCAAGAAATGACGCCGATCAGCTTACCCTCAGCAACGAACGGACCGCCCGAATCTTGTCGACACGTATCTTGACCGCCCTGTTTGTACCCCGCACAAAAAATTTGATCCGTAATGCCACCCGTACATGGACTGGTAGGCTTTGTTACATTCCTGCTGGTTAACGGTCGGTACGTTTGTTGCTCGTAGAACATCGTTCGAATCGGCCTCACTCAGTGTCAAACCCCAGCCAGAGACGATTCCCATTGTTCCTTCCTCGATCGGTTCATCCTGTTCCGGCAGTGCAATGGGTTGAACCTTTTCGCTAAACGTAAGCTCGTTTTTCAACTCCAGTAGGGCAATGTCGTAGTTGTTCTTGCTACCATGCATAGGATGAGGCACAATACGAGCTACACGTACGACGGTACCACCGGATGCATGTTCGGACGATCCTACGCGGACGGTTGGCTTCGAGGGTGCGTTATCGTTGATGCAGTGTGCTGCGGTTAGGATCCACTTGCTACTCAGGATAGAGCCTCCACAGTTATGATCGTCGTCGTACTGTAGTGAAACCTGAATA ] [+] EMBL CNS08RZM [ TATTGAAATCGGACTGCATTTTTCCCATTCAGGCCAATAACGACACACATATCCGTTAAAGCATTGGTCACATACATACTTATACGAGTGGCATTTGCCATATGTATTTATGCTTGCAATAACTTTCGTCTACAATTCTCGAAATTGTTATTCATGAGATATTGGTTCTAGCAACAAAAACGACAGTGGGAACATTCAACAATTAGATCTACGCAATGTGATACTGGATAGGCTCCTACACTCCACTAGTCGTACGAATCCAGTCACGCGCACTTGCCACACGTGCGTACACCCCCGGATAGCCTGCCAGAGCGCATTCGTGGCCCCAAGAAATGACGCCGATCAGCTTACCCTCAGCAACGAACGGACCGCCCGAATCTTGTCGACACGTATCTTGACCGCCCTGTTTGTACCCCGCACAAAACATTTGATCCGTAATGCCA CCGTAAATGGACTGGTAGGCTTTGTTACATTCCTGCTGGTTAACGGTCGGTACGTTTTTTGCTCGTAGAACATCGTTCGAATCGGCCTCACTCAGTTTCAAACCCCAGCCAGAAACGATTCCCATTGTTCCTTCCTCGATCGGTTCATCCTGTTCCGGCAGTTCAATGGGTTGAACCTTTTCGCTAAACGTAAGCCCGTTTTTCAACTCCAGTAGGGCAATTTCGTATTTTTTCTTGCTACCATGCATAGGATGAGGCACAATACGAGCT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8295#0 TTTTTTCTTAAATTAAAAGATTGTGTTTGGTATTTTATTGATATCGGACTGCATTTTTCC 60 consensus_8295#1 -TTTGTTTTTTTTT------TTGTGTTTGGTATTTTATTGATATCGGACTGCATTTTTCC 53 *** * ** ** **************************************** consensus_8295#0 CATTCAGGCCAATTACGACACACATATCCGTTAAAGCATTGGTCACATACATACTTATAC 120 consensus_8295#1 CATTCAGGCCAATTACGACACACATATCCGTTAAAGCATTGGTCACATACATACTTATAC 113 ************************************************************ consensus_8295#0 GAGTTGCATTTGCCATATGTATTTATGCTTGCAATAACTTTCGTCTACAATTCTCGAAAT 180 consensus_8295#1 GAGTTGCATTTGCCATATGTATTTATGCTTGCAATAACTTTCGTCTACAATTCTCGAAAT 173 ************************************************************ consensus_8295#0 TGTTATTCATGAGATATTGGTTCTAGCAACAAAAACGACAGTGGGAACATTCAACAATTA 240 consensus_8295#1 TGTTATTCATGAGATATTGGTTCTAGCAACAAAAACGACAGTTGGAACATTCAACAATTA 233 ****************************************** ***************** consensus_8295#0 GATCTACGCAATGTGATACTGGATAGGCTCCTACACTCCACTAGTCGTACGAATCCAGTA 300 consensus_8295#1 GATCTACGCAATGTGATACTGGATAGGCTCCTACACTCCACTAGTCGTACGAATCCAGTC 293 *********************************************************** consensus_8295#0 ACGCGCACTTGCCACACGTGCGTACACCCCCGGATAGCCTGCCAGAGCGCATTCGTGGCC 360 consensus_8295#1 ACGCGCACTTGCCACACGTGCGTACACCCCCGGATAGCCTGCCAGAGCGCATTCGTGGCC 353 ************************************************************ consensus_8295#0 CCAAGAAATGACGCCGATCAGCTTACCCTCAGCAACGAACGGACCGCCCGAATCTTGTCG 420 consensus_8295#1 CCAAGAAATGACGCCGATCAGCTTACCCTCAGCAACGAACGGACCGCCCGAATCTTGTCG 413 ************************************************************ consensus_8295#0 ACACGTATCTTGACCGCCCTGTTTGTACCCCGCACAAAACATTTGATCCGTAATGCCACC 480 consensus_8295#1 ACACGTATCTTGACCGCCCTGTTTGTACCCCGCACAAAACATTTGATCCGTAATGCCACC 473 ************************************************************ consensus_8295#0 GTACATGGACTGGTAGGCTTTGTTACATTCCTGCTGGTTAACGGTCGGTACGTTTGTTGC 540 consensus_8295#1 GTACATGGACTGGTAGGCTTTGTTACATTCCTGCTGGTTAACGGTCGGTACGTTTGTTGC 533 ************************************************************ consensus_8295#0 TCGTAGAACATCGTTCGAATCGGCCTCACTCAGTGTCAAACCCCAGCCAGAGACGATTCC 600 consensus_8295#1 TCGTAGAACATCGTTCGAATCGGCCTCACTCAGTGTCAAACCCCAGCCAGAGACGATTCC 593 ************************************************************ consensus_8295#0 CATTGTTCCTTCCTCGATCGGTTCATCCTGTTCCGGCAGTCCAATGGGTTGAACCTTTTC 660 consensus_8295#1 CATTGTTCCTTCCTCGATCGGTTCATCCTGTTCCGGCAGTGCAATGGGTTGAACCTTTTC 653 **************************************** ******************* consensus_8295#0 GCTAAACGTAAGCTCGTTTTTCAACTCCAGTGGGGCAATGTCGTAGTTGTTCTTGCTACC 720 consensus_8295#1 GCTAAACGTAAGCTCGTTTTTCAACTCCAGTAGGGCAATGTCGTAGTTGTTCTTGCTACC 713 ******************************* **************************** consensus_8295#0 ATGCATAGGATGAGGCACAATACGAGCTACACGTACGACGGTACCACCGGATGCATGTTC 780 consensus_8295#1 ATGCATAGGATGAGGCACAATACGAGCTACACGTACGACGGTACCACCGGATGCATGTTC 773 ************************************************************ consensus_8295#0 GGACGATCCTACGCGGACGGTTGGCTTCGAGGGTGCGTTATCGTTGATGCAGTTTGCTGC 840 consensus_8295#1 GGACGATCCTACGCGGACGGTTGGCTTCGAGGGTGCGTTATCGTTGATGCAGTTTGCTGC 833 ************************************************************ consensus_8295#0 GGTTAGGATCCACTTGCTACTCAGGATAGAGCCTCCACAGTTATGATCGTCGTCGTACTG 900 consensus_8295#1 GGTTAGGATCCACTTGCTACTCAGGATAGAGCCTCCACAGTTATGATCGTCGTCGTACTG 893 ************************************************************ consensus_8295#0 TAGTTAAACCTGAAGAGGGTGCATCCGAGAAATCGATCACAAATCCACCGACAATCCGTT 960 consensus_8295#1 TAGTGAAACCTGGATAGGGTGCATCC---------------------------------- 919 **** ******* * *********** consensus_8295#0 TGCCAGCCAGGTATGGCGGACGCGTGGGCGG 991 consensus_8295#1 ------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||