Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 8310 cluster # 8310       Sequences # 10       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8310#0 length = 1177 sequences # 3  
consensus_8310#1 length = 761 sequences # 1  
consensus_8310#2 length = 676 sequences # 2  
consensus_8310#3 length = 604 sequences # 2  
consensus_8310#4 length = 365 sequences # 2  

consensusID : consensus_8310#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1177
fasta sequence
                              [CCGGGGGTTTAGTTTTTGGTCCGGCTTAGCCACTTTTTTCCCGCTTCACGTCACCCATAAAGTACCGGTGTGCAGTGTGGCCTACAAATGATTGAAAGCAGACGTTGAACGTACGCCGCACCCATCTTACCCCTTGTTCCTGTGTTCATTTGCTACCGGCGGTGCTAGTGGCACCGGAGAATATCCCTCGGCGAGTGTGCTAGCAGCAGGGTTGAAGCGGTTCCTCTCATAGAGGGTAATTGTACGTTCCTACGGTACGGTAGCTAGTAATCAGCTAGATTGTGTTCGACAGTGCTGACACGGCAGTACGCGCGTAGTGTGACAAACGTGTGAGGCGAAAGCAAACGAAGGAATTCCGCGCACGAAAGGTGGAAGCAGTAGGCAGCAGCACCAGCAGCACCACAGCATGAGCGGAGAACCAGAAAAGGCAACAAAGAAGCAGAAGACGTGCCTGCAGGTGGCGACGAACGTGACCGAGCAGAAGCACAACGTGTCACGGGAGGTGCGCGGCCAGAACCTTGGGCTGTGCAGGGGCTTCCGCGGCTGCACCGTCTGGCTGACGGGGCTGAGCGGCGCGGGCAAGACGTCGATCGCGTTCGAGCTGGAAGCGTACCTCGTGTCGAAGGGCATCCCGGCGTACGGGCTCGACGGGGACAACATCCGCACCGGGCTGAACAAAAACCTCGGCTTCTCGCAGGTCGACCGGGAGGAGAACATTCGCCGCGTGGCCGAGGTGGCGAAGCTGTTCGCCGACAGTGGCGTCGTGTCGATCTGCAGCTTCGTGTCGCCGTTCGCGGAGGATCGCGAGATGGCGCGCAAGATCCACAAGGATGCGGATTTGAAGTTTTTCGAGATCTACATCGACACGCCGCTGGAGGTGTGCGAGACGCGCGACACGAAGGGCCTGTACAAGAAGGCGCGCCAGGGCGTGATCCAGGGCTTTACGGGCGTGACGCAGGCGTACGAGGCGCCGGACGCACCGGATCTGCGCGTCAGCACGGAGGGTATGACGGTGCGCGAGTCCACGCTGAAGCTGATCAAGCTGCTGGAGAGCGAAGCGATCATACCGAAGTTCCTGAAGGAGGACGAACCGCTGCCGGAGCTGTTTGTGGCGGAAAACCTCAAGACGGCGCTGGAGGCGGAAGCGAAAACGCTGCCCGCGCTGGCGCTCACCGAG]

[+] EMBL BM640264             [CCGGGGGTTTAGTTTTTGGTCCGGCTTAGCCACTTTTTTCCCGCTTCACGTCACCCATAAAGTACCGGTGTGCAGTGTGGCCTACAAATGATTGAAAGCAGACGTTGAACGTACGCCGCACCCATCTTACCCCTTGTTCCTGTGTTCATTTGCTACCGGCGGTGCTAGTGGCACCGGAGAATATCCCTCGGCGAGTGTGCTAGCAGCAGGGTTGAAGCGGTTCCTCTCATAGAGGGTAATTGTACGTTCCTACGGTACGGTAGCTAGTAATCAGCTAGATTGTGTTCGACAGTGCTGACACGGCAGTACGCGCGTAGTGTGACAAACGTGTGAGGCGAAAGCAAACGAAGGAATTCCGCGCACGAAAGGTGGAAGCAGTAGGCAGCAGCACCAGCAGCACCACAGCATGAGCGGAGAACCAGAAAAGGCAACAAAGAAGCAGAAGACGTGCCTGCAGGTGGCGACGAACGTGACCGAGCAGAAGCACAACGTGTCACGGGAGGTGCGCGGCCAGAACCTTGGGCTGTGCAGGGGCTTCCGCGGCTGCACCGTCTGGCTGACGGGGCTGAGCGGCGCGGGCAAGACGTCGATCGCGTTCGAGCTGGAAGCGTACCTCGTGTCGAAGGGCATCCCGGCGTACGGGCTCGACGGGGACAACATCCGCACCGGGCTGAACAAAAACCTCGGCTTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BM606393             [                                                                                                                                                                                                                                                                                           ccgCGACAGTGCTGACACGGCAGTTCGCGCGTAGTGTGACAAACGTGTGAGGCGAAAGCAAACGAAGGAATTCCGCGCACGAAAGGTGGAAGCAGTAGGCAGCAGCACCAGCAGCACCACATCATGAGCGGAGAACCAGAAAAGGCAACGAAGAAGCAGAAGACGTGCCTGCAGGTGGCGACGAACGTGACCGAGCAGAAGCACAACGTGTCACGGGAGGTGCGCGGCCAGAACCTTGGGCTGTGCAGGGGCTTCCGCGGCTGCACCGTCTGGCTGACGGGGCTGAGCGGCGCGGGCAAGACGTCGATCGCGTTCGAGCTGGAAGCGTACCTCGTGTCGAAGGGCATCCCGGCGTACGGGCTCGACGGGGACAACATCCGCACCGGGCTGAACAAAAACCTCGGCTTCTCGCAGGTCGACCGGGAGGAGAACATTCGCCGCGTGGCCGAGGTGGCGAAGCTGTTCGCCGACAGTGGCGTCGTGTCGATCTGCAGCTTCGTGTCGCCGTTCGCGGAGGATCGCGAGATGGCGCGCAAGATCCACAAGGATGCGGATTTGAAGTTTTTCGAGATCTACATCGACACGCCGCTGGAGGTGTGCGAGACGCGCGACACGAAGGGCCTGTACAAGAAGGCGCGCCAGGGCGTGATCCAGGGCTTTACGGGCGTGACGCAGGC                                                                                                                                                                                                                         ]
[+] EMBL BM635757             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      cccaCGCGTCCGCACCGTCTGGCTGACGGGGTTGAGCGGCGCGGGCAAGACGTCGATCGCGTTCGAGCTGGAAGCGTACCTCGTGTCGAAGGGCATCCCGGCGTACGGGCTCGACGGGGACAACATCCGCACCGGGCTGAACAAAAACCTCGGCTTCTCGCAGGTCGACCGGGAGGAAAACATTCGCCGCGTGGCCGAGGTGGCGAAGCTGTTCGCCGACAGTGGCGTCGTGTCGATCTGCAGCTTCGTGTCGCCGTTCGCGGAGGATCGCGAGATGGCGCGCAAGATCCACAAGGATGCGGATTTGAAGTTTTTCGAGATCTACATCGACACGCCGCTGGAGGTGTGCGAGACGCGCGACACGAAGGGCCTGTACAAGAAGGCGCGCCAGGGCGTGATCCAGGGCTTTACGGGCGTGACGCAGGCGTACGAGGCGCCGGACGCACCGGATCTGCGCGTCAGCACGGAGGGTATGACGGTGCGCGAGTCCACGCTGAAGCTGATCAAGCTGCTGGAGAGCGAAGCGATCATACCGAAGTTCCTGAAGGAGGACGAACCGCTGCCGGAGCTGTTTGTGGCGGAAAACCTCAAGACGGCGCTGGAGGCGGAAGCGAAAACGCTGCCCGCGCTGGCGCTCACCGAG]


>consensus_8310#0 CCGGGGGTTTAGTTTTTGGTCCGGCTTAGCCACTTTTTTCCCGCTTCACGTCACCCATAA AGTACCGGTGTGCAGTGTGGCCTACAAATGATTGAAAGCAGACGTTGAACGTACGCCGCA CCCATCTTACCCCTTGTTCCTGTGTTCATTTGCTACCGGCGGTGCTAGTGGCACCGGAGA ATATCCCTCGGCGAGTGTGCTAGCAGCAGGGTTGAAGCGGTTCCTCTCATAGAGGGTAAT TGTACGTTCCTACGGTACGGTAGCTAGTAATCAGCTAGATTGTGTTCGACAGTGCTGACA CGGCAGTACGCGCGTAGTGTGACAAACGTGTGAGGCGAAAGCAAACGAAGGAATTCCGCG CACGAAAGGTGGAAGCAGTAGGCAGCAGCACCAGCAGCACCACAGCATGAGCGGAGAACC AGAAAAGGCAACAAAGAAGCAGAAGACGTGCCTGCAGGTGGCGACGAACGTGACCGAGCA GAAGCACAACGTGTCACGGGAGGTGCGCGGCCAGAACCTTGGGCTGTGCAGGGGCTTCCG CGGCTGCACCGTCTGGCTGACGGGGCTGAGCGGCGCGGGCAAGACGTCGATCGCGTTCGA GCTGGAAGCGTACCTCGTGTCGAAGGGCATCCCGGCGTACGGGCTCGACGGGGACAACAT CCGCACCGGGCTGAACAAAAACCTCGGCTTCTCGCAGGTCGACCGGGAGGAGAACATTCG CCGCGTGGCCGAGGTGGCGAAGCTGTTCGCCGACAGTGGCGTCGTGTCGATCTGCAGCTT CGTGTCGCCGTTCGCGGAGGATCGCGAGATGGCGCGCAAGATCCACAAGGATGCGGATTT GAAGTTTTTCGAGATCTACATCGACACGCCGCTGGAGGTGTGCGAGACGCGCGACACGAA GGGCCTGTACAAGAAGGCGCGCCAGGGCGTGATCCAGGGCTTTACGGGCGTGACGCAGGC GTACGAGGCGCCGGACGCACCGGATCTGCGCGTCAGCACGGAGGGTATGACGGTGCGCGA GTCCACGCTGAAGCTGATCAAGCTGCTGGAGAGCGAAGCGATCATACCGAAGTTCCTGAA GGAGGACGAACCGCTGCCGGAGCTGTTTGTGGCGGAAAACCTCAAGACGGCGCTGGAGGC GGAAGCGAAAACGCTGCCCGCGCTGGCGCTCACCGAG



consensusID : consensus_8310#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 761
fasta sequence
                              [GAATNGCCCCGAGGTTTAAGCGAAAACGCTGCCCTGCGCTTGCTGCTCACCGAGGTTGAGCTGCAGTGGCTCCAGATACTGGCCGAGGGGTTGGCCTACCCGCTGAAGGGGTTCATGCGCGAACAGGAGTACCTGCAGTGCGCTGCACTTCAACTGTCTGCTGAACTGAGTGACTGAAACTGCTGCTGCTGTCTAATCAGTCCTGTCCCGATAGTGCTTGTCCTGCTGACCTGAGTGCCTGATAAGCAGCTGNGCTCGCAGGGGGTCAGTGCACTTTGTCGGCTGCAGTACTGTGCTGTGTGCTGCACTGTGTGTGCTGTGTGTTTGCTGCAATGCCCTGAGTTCTATCATACCATGCTGCAATAGTGATGTGATGCTGTGTTGTCTGCCCTGGCAGTTCTGGCCACTGATGCAATCTGTGTGCCCATCCTGTACATTCAAAGATTGATCTACTGATGTCTGTGTGCTGACTATCTTGGGTGTGTGTGTGTGCTGATGATCTGATGTGCACTTGTGATGCTGCATCCANTGTTGTGAACTGACTGGGCTTGGCACTGCCTATATCTGGCTTGACTGCCGAACTGATGGCTTGCTGTGCCAAAGGTTTCCGCTGGACGGATCAAGGCTGTGACGCCGTGTTTTGCGCTTCCCAGACTTGCGCAATTCCGATCCCACAATTGGGCGACTGCTGCGTTGCTTGATTGNAGCTGACTTGCCTGTCTGGGCAGCTTGCATCGGAGCTGCGGNTACAAGAACCCGGT]

[+] EMBL AL930225             [GAATNGCCCCGAGGTTTAAGCGAAAACGCTGCCCTGCGCTTGCTGCTCACCGAGGTTGAGCTGCAGTGGCTCCAGATACTGGCCGAGGGGTTGGCCTACCCGCTGAAGGGGTTCATGCGCGAACAGGAGTACCTGCAGTGCGCTGCACTTCAACTGTCTGCTGAACTGAGTGACTGAAACTGCTGCTGCTGTCTAATCAGTCCTGTCCCGATAGTGCTTGTCCTGCTGACCTGAGTGCCTGATAAGCAGCTGNGCTCGCAGGGGGTCAGTGCACTTTGTCGGCTGCAGTACTGTGCTGTGTGCTGCACTGTGTGTGCTGTGTGTTTGCTGCAATGCCCTGAGTTCTATCATACCATGCTGCAATAGTGATGTGATGCTGTGTTGTCTGCCCTGGCAGTTCTGGCCACTGATGCAATCTGTGTGCCCATCCTGTACATTCAAAGATTGATCTACTGATGTCTGTGTGCTGACTATCTTGGGTGTGTGTGTGTGCTGATGATCTGATGTGCACTTGTGATGCTGCATCCANTGTTGTGAACTGACTGGGCTTGGCACTGCCTATATCTGGCTTGACTGCCGAACTGATGGCTTGCTGTGCCAAAGGTTTCCGCTGGACGGATCAAGGCTGTGACGCCGTGTTTTGCGCTTCCCAGACTTGCGCAATTCCGATCCCACAATTGGGCGACTGCTGCGTTGCTTGATTGNAGCTGACTTGCCTGTCTGGGCAGCTTGCATCGGAGCTGCGGNTACAAGAACCCGGT]


>consensus_8310#1 GAATNGCCCCGAGGTTTAAGCGAAAACGCTGCCCTGCGCTTGCTGCTCACCGAGGTTGAG CTGCAGTGGCTCCAGATACTGGCCGAGGGGTTGGCCTACCCGCTGAAGGGGTTCATGCGC GAACAGGAGTACCTGCAGTGCGCTGCACTTCAACTGTCTGCTGAACTGAGTGACTGAAAC TGCTGCTGCTGTCTAATCAGTCCTGTCCCGATAGTGCTTGTCCTGCTGACCTGAGTGCCT GATAAGCAGCTGNGCTCGCAGGGGGTCAGTGCACTTTGTCGGCTGCAGTACTGTGCTGTG TGCTGCACTGTGTGTGCTGTGTGTTTGCTGCAATGCCCTGAGTTCTATCATACCATGCTG CAATAGTGATGTGATGCTGTGTTGTCTGCCCTGGCAGTTCTGGCCACTGATGCAATCTGT GTGCCCATCCTGTACATTCAAAGATTGATCTACTGATGTCTGTGTGCTGACTATCTTGGG TGTGTGTGTGTGCTGATGATCTGATGTGCACTTGTGATGCTGCATCCANTGTTGTGAACT GACTGGGCTTGGCACTGCCTATATCTGGCTTGACTGCCGAACTGATGGCTTGCTGTGCCA AAGGTTTCCGCTGGACGGATCAAGGCTGTGACGCCGTGTTTTGCGCTTCCCAGACTTGCG CAATTCCGATCCCACAATTGGGCGACTGCTGCGTTGCTTGATTGNAGCTGACTTGCCTGT CTGGGCAGCTTGCATCGGAGCTGCGGNTACAAGAACCCGGT



consensusID : consensus_8310#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 676
fasta sequence
                              [CCGGTTCGTCAGTTCAGCATTACTCCCGACCGTACACGATGCAGCAGCAGCAGCAGCAGCAGGAAGAGTGCCTGCAGGTGGCGACGAACGTGACCGAGCAGAAGCACAACGTGTCACGGGAGGTGCGCGGCCAGAACCTTGGGCTGTGCAGGGGCTTCCGCGGCTGCACCGTCTGGCTGACGGGGCTGAGCGGCGCGGGCAAGACGTCGATCGCGTTCGAGCTGGAAGCGTACCTCGTGTCGAAGGGCATCCCGGCGTACGGGCTGGACGGGGACAACATCCGCACCGGGCTGAACAAAAACCTCGGCTTCTCGCAGGTCGACCGGGAGGAAAACATTCGCCGCGTGGCCGAGGTGGCGAAGCTGTTCGCCGACAGTGGCGTCGTGTCGATCTGCAGCTTCGTGTCGCCGTTCGCGGAGGATCGCGAGATGGCGCGCAAGATCCACAAGGATGCGGATTTGAAGTTTTTCGAGATCTACATCGACACGCCGCTGGAGGTGTGCGAGACGCGCGACACCAAGGGCCTGTACAAGAAGGCGCGCCAGGGCGTGATCCAGGGCTTTACGGGCGTGACGCAGGCGTACGAGGCGCCGGACGCACCGGATCTGCGCGTCAGCACGGAGGGTATGACGGTGCGCGAGTCCACGCTGAAGCTGATCAAGCTGCTGGAGAGCGA]

[+] EMBL BM584843             [CCGGTTCGTCAGTTCAGCATTACTCCCGACCGTACACGATGCAGCAGCAGCAGCAGCAGCAGGAAGAGTGCCTGCAGGTGGCGACGAACGTGACCGAGCAGAAGCACAACGTGTCACGGGAGGTGCGCGGCCAGAACCTTGGGCTGTGCAGGGGCTTCCGCGGCTGCACCGTCTGGCTGACGGGGCTGAGCGGCGCGGGCAAGACGTCGATCGCGTTCGAGCTGGAAGCGTACCTCGTGTCGAAGGGCATCCCGGCGTACGGGCTGGACGGGGACAACATCCGCACCGGGCTGAACAAAAACCTCGGCTTCTCGCAGGTCGACCGGGAGGAAAACATTCGCCGCGTGGCCGAGGTGGCGAAGCTGTTCGCCGACAGTGGCGTCGTGTCGATCTGCAGCTTCGTGTCGCCGTTCGCGGAGGATCGCGAGATGGCGCGCAAGATCCACAAGGATGCGGATTTGAAGTTTTTCGAGATCTACATCGACACGCCGCTGGAGGTGTGCGAGACGCGCGACACCAAGGGCCTGTACAAGAAGGCGCGCCAGGGCGTGATCCAGGGCTTTACGGGCGTGACGCAGGCGTACGAGGCGCCGGACGCACCGGATCTGCGCGTCAGCACGGAGGGTATGACGGTGCGCGAGTCCACGCTGAAGCTGATCAAGCTGCTGGAGAGCGA]
[+] EMBL BM622208             [CCGGTTCGTCGGTTCATCGTTACTCCCGACCGTACACGATGCAGCAGCAGCAGCAGCAGCAGGAAGAGTGCCTGCAGGTGGCGACGAACGTGACCGAGCAGAAGCACAACGTGTCACGGGAGGTGCGCGGCCAGAACCTTGGGCTGTGCAGGGGCTTCCGCGGCTGCACCGTCTGGCTGACGGGGCTGAGCGGCGCGGGCAAGACGTCGATCGCGTTCGAGCTGGAAGCGTACCTCGTGTCGAAGGGCATCCCGGCGTACGGGCTCGACGGGGACAACATCCGCACCGGGCTGAACAAAAACCTCGGCTTCTCGCAGGTCGACCGGGAGGAGAACATTCGCCGCGTGGCCGAGGTGGCGAAGCTGTTCGCCGACAGTGGCGTCGTGTCGATCTGCAGCTTCGTGTCGCCGTTCGCGGAGGATCGCGAGATGGCGCGCAAGATCCACAAGGATGCGGATTTGAAGTTTTTCGAGATCTACATCGACACGCCGCTGGAGGTGTGCGAGACGCGCGACACGAAGGGCCTGTACAAGAAGGCGCGCCAGGGCGTGATCCAGGGCTTTACGGGCGTGACGCAGGCGTACGAGGCGCCGGACGCACCGGATCTGCGCGTCAGCACGGAGGGT                                                  ]


>consensus_8310#2 CCGGTTCGTCAGTTCAGCATTACTCCCGACCGTACACGATGCAGCAGCAGCAGCAGCAGC AGGAAGAGTGCCTGCAGGTGGCGACGAACGTGACCGAGCAGAAGCACAACGTGTCACGGG AGGTGCGCGGCCAGAACCTTGGGCTGTGCAGGGGCTTCCGCGGCTGCACCGTCTGGCTGA CGGGGCTGAGCGGCGCGGGCAAGACGTCGATCGCGTTCGAGCTGGAAGCGTACCTCGTGT CGAAGGGCATCCCGGCGTACGGGCTGGACGGGGACAACATCCGCACCGGGCTGAACAAAA ACCTCGGCTTCTCGCAGGTCGACCGGGAGGAAAACATTCGCCGCGTGGCCGAGGTGGCGA AGCTGTTCGCCGACAGTGGCGTCGTGTCGATCTGCAGCTTCGTGTCGCCGTTCGCGGAGG ATCGCGAGATGGCGCGCAAGATCCACAAGGATGCGGATTTGAAGTTTTTCGAGATCTACA TCGACACGCCGCTGGAGGTGTGCGAGACGCGCGACACCAAGGGCCTGTACAAGAAGGCGC GCCAGGGCGTGATCCAGGGCTTTACGGGCGTGACGCAGGCGTACGAGGCGCCGGACGCAC CGGATCTGCGCGTCAGCACGGAGGGTATGACGGTGCGCGAGTCCACGCTGAAGCTGATCA AGCTGCTGGAGAGCGA



consensusID : consensus_8310#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 604
fasta sequence
                              [CCGCCCACGCGTCCGCGCGCAATATCCACAAGGATGCGGATTTGAAGTTTTTCGAGATCTACATCGACACGCCGCTGGAGGTGTGCGAGACGCGCCACACCAAGGGCCTGTACAAGAAGGCGCGCCAGGGCGTGATCCAGGGCTTTACGGGCGTGACGCAGGCGTACGAGGCGCCGGACGCACCGGATCTGCGCGTCATCACGGAGGGTATGACGGTGCTCGAGTCCACGCTGAAGCTGATCAAGCTGCTGGAGATCGAAACGATCATACCGAAGTTCCTGAAGGAGGACGAACCGCTGCCGGAGCTGTTTGTGGCGAACAGTCTCAAGACGGCGCTGGAGGCGGAAGCCAAAACGCTGCCCGCGCTGGCGCTCACCGAGGGGGAGCTGCAATGGCTCCAGATACTGGCCGAGGGGTGGGCCTACCCGCTGAAGGGGTTCATGCGCGAACAGGAGTACCTGCAGGCGCTGCACTTCAACTGTCTGCTGAACGAGGACGAAACGCTGCGCGTCAATCAGTCCGTCCCGATAGTGCTGTCCGCGACCGAGGCCGATAAGCAGCGGCTTGAGGGGGTCAGTGCACGTGCGCTGCAGTACGGCGGGCG]

[+] EMBL BM596330             [CCGCCCACGCGTCCGCGCGCAATATCCACAAGGATGCGGATTTGAAGTTTTTCGAGATCTACATCGACACGCCGCTGGAGGTGTGCGAGACGCGCCACACCAAGGGCCTGTACAAGAAGGCGCGCCAGGGCGTGATCCAGGGCTTTACGGGCGTGACGCAGGCGTACGAGGCGCCGGACGCACCGGATCTGCGCGTCATCACGGAGGGTATGACGGTGCTCGAGTCCACGCTGAAGCTGATCAAGCTGCTGGAGATCGAAACGATCATACCGAAGTTCCTGAAGGAGGACGAACCGCTGCCGGAGCTGTTTGTGGCGAACAGTCTCAAGACGGCGCTGGAGGCGGAAGCCAAAACGCTGCCCGCGCTGGCGCTCACCGAGGGGGAGCTGCAATGGCTCCAGA                                                                                                                                                                                                          ]
[-] EMBL AGA281969            [                                                                                                                                                                                                                                                                                                                                                                       CCCGCGCTGGCGCTCACCGAGGTGGAGCTGCAGTGGCTCCAGATACTGGCCGAGGGGTGGGCCTACCCGCTGAAGGGGTTCATGCGCGAACAGGAGTACCTGCAGGCGCTGCACTTCAACTGTCTGCTGAACGAGGACGAAACGCTGCGCGTCAATCAGTCCGTCCCGATAGTGCTGTCCGCGACCGAGGCCGATAAGCAGCGGCTTGAGGGGGTCAGTGCACGTGCGCTGCAGTACGGCGGGCG]


>consensus_8310#3 CCGCCCACGCGTCCGCGCGCAATATCCACAAGGATGCGGATTTGAAGTTTTTCGAGATCT ACATCGACACGCCGCTGGAGGTGTGCGAGACGCGCCACACCAAGGGCCTGTACAAGAAGG CGCGCCAGGGCGTGATCCAGGGCTTTACGGGCGTGACGCAGGCGTACGAGGCGCCGGACG CACCGGATCTGCGCGTCATCACGGAGGGTATGACGGTGCTCGAGTCCACGCTGAAGCTGA TCAAGCTGCTGGAGATCGAAACGATCATACCGAAGTTCCTGAAGGAGGACGAACCGCTGC CGGAGCTGTTTGTGGCGAACAGTCTCAAGACGGCGCTGGAGGCGGAAGCCAAAACGCTGC CCGCGCTGGCGCTCACCGAGGGGGAGCTGCAATGGCTCCAGATACTGGCCGAGGGGTGGG CCTACCCGCTGAAGGGGTTCATGCGCGAACAGGAGTACCTGCAGGCGCTGCACTTCAACT GTCTGCTGAACGAGGACGAAACGCTGCGCGTCAATCAGTCCGTCCCGATAGTGCTGTCCG CGACCGAGGCCGATAAGCAGCGGCTTGAGGGGGTCAGTGCACGTGCGCTGCAGTACGGCG GGCG



consensusID : consensus_8310#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 365
fasta sequence
                              [CTGCGGCAAGCACAAGGACTGTGCCGGTAACGTTTCTCCCGACTGCCTGCAGGTGGCGACGAACGTGACCGAGCAGAAGCACAACGTGTCACGGGAGGTGCGCGGCCAGAACCTTGGGCTGTGCAGGGGCTTCCGCGGCTGCACCGTCTGGCTGACGGGGCTGAGCGGCGCGGGCAAGACGTCGATCGCGTTCGAGCTGGAAGCGTACCTCGTGTCGAAGGGCATCCCGGCGTACGGGCTCGACGGGGACAACATCCGCACCGGGCTGAACAAAAACCTCGGCTTCTCGCAGGTCGACCGGGAGGAGAACATTCGCCGCGTGGCCGAGGTGGCGAAGCTGTTCGCCGACAGTGGCGTCGTGTCGA]

[+] EMBL AGA280270            [CTGCGGCAAGCACAAGGACTGTGCCGGTAACGTTTCTCCCGACTGCCTGCAGGTGGCGACGAACGTGACCGAGCAGAAGCACAACGTGTCACGGGAGGTGCGCGGCCAGAACCTTGGGCTGTGCAGGGGCTTCCGCGGCTGCACCGTCTGGCTGACGGGGCTGAGCGGCGCGGGCAAGACGTCGATCGCGTTCGAGCTGGAAGCGTACCTCGTGTCGAAGGGCATCCCGGCGTACGGGCTCGACGGGGACAACATCCGCACCGGGCTGAACAAAAACCTCGGCTTCTCGCAGGTCGACCGGGAGGAGAACATTCGCCGCGTGGCCGAGGTGGCGAAGCTGTTCGCCGACAGTGGCGTCGTGTCGA]
[+] EMBL AGA280117            [CTGCGGCAAGCACAAGGACTGTGCCGGTAACGTTTCTCCCGAGTGCCTGCAGGTGGCGACGAACGTGACCGAGCAGAAGCACA                                                                                                                                                                                                                                                                                          ]


>consensus_8310#4 CTGCGGCAAGCACAAGGACTGTGCCGGTAACGTTTCTCCCGACTGCCTGCAGGTGGCGAC GAACGTGACCGAGCAGAAGCACAACGTGTCACGGGAGGTGCGCGGCCAGAACCTTGGGCT GTGCAGGGGCTTCCGCGGCTGCACCGTCTGGCTGACGGGGCTGAGCGGCGCGGGCAAGAC GTCGATCGCGTTCGAGCTGGAAGCGTACCTCGTGTCGAAGGGCATCCCGGCGTACGGGCT CGACGGGGACAACATCCGCACCGGGCTGAACAAAAACCTCGGCTTCTCGCAGGTCGACCG GGAGGAGAACATTCGCCGCGTGGCCGAGGTGGCGAAGCTGTTCGCCGACAGTGGCGTCGT GTCGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8310#2      ------------------------------------------------------------
consensus_8310#4      ------------------------------------------------------------
consensus_8310#0      CCGGGGGTTTAGTTTTTGGTCCGGCTTAGCCACTTTTTTCCCGCTTCACGTCACCCATAA 60
consensus_8310#3      ------------------------------------------------------------
consensus_8310#1      ------------------------------------------------------------
                                                                                  

consensus_8310#2      ------------------------------------------------------------
consensus_8310#4      ------------------------------------------------------------
consensus_8310#0      AGTACCGGTGTGCAGTGTGGCCTACAAATGATTGAAAGCAGACGTTGAACGTACGCCGCA 120
consensus_8310#3      ------------------------------------------------------------
consensus_8310#1      ------------------------------------------------------------
                                                                                  

consensus_8310#2      ------------------------------------------------------------
consensus_8310#4      ------------------------------------------------------------
consensus_8310#0      CCCATCTTACCCCTTGTTCCTGTGTTCATTTGCTACCGGCGGTGCTAGTGGCACCGGAGA 180
consensus_8310#3      ------------------------------------------------------------
consensus_8310#1      ------------------------------------------------------------
                                                                                  

consensus_8310#2      ------------------------------------------------------------
consensus_8310#4      ------------------------------------------------------------
consensus_8310#0      ATATCCCTCGGCGAGTGTGCTAGCAGCAGGGTTGAAGCGGTTCCTCTCATAGAGGGTAAT 240
consensus_8310#3      ------------------------------------------------------------
consensus_8310#1      ------------------------------------------------------------
                                                                                  

consensus_8310#2      ------------------------------------------------------------
consensus_8310#4      ------------------------------------------------------------
consensus_8310#0      TGTACGTTCCTACGGTACGGTAGCTAGTAATCAGCTAGATTGTGTTCGACAGTGCTGACA 300
consensus_8310#3      ------------------------------------------------------------
consensus_8310#1      ------------------------------------------------------------
                                                                                  

consensus_8310#2      ------------------------------------------------------------
consensus_8310#4      ------------------------------------------------------------
consensus_8310#0      CGGCAGTACGCGCGTAGTGTGACAAACGTGTGAGGCGAAAGCAAACGAAGGAATTCCGCG 360
consensus_8310#3      ------------------------------------------------------------
consensus_8310#1      ------------------------------------GAATNGCCCCGAGGTTTAAGCGAA 24
                                                                                  

consensus_8310#2      -----------------CCGGTTCGTCAGTTCAGCATTACTCCCGACCGTACACGATGC- 42
consensus_8310#4      ---------------------------------------CTGCGGCAAGCACAAGG-AC- 19
consensus_8310#0      CACGAAAGGTGGAAGCAGTAGGCAGCAGCACCAGCAGCACCACAGCATGAGCGGAGAACC 420
consensus_8310#3      ------------------------------------------------------------
consensus_8310#1      AACGCTGCCCTGCGCTTGCTGCTCACCGAGGTTGAGCTGCAGTGGCTC-CAGATACTGGC 83
                                                                                  

consensus_8310#2      AGCAGCAGCAGCA--GCAGCAGGAAGAGTGCCTGCAGGTGGCGAC--GAACGTG-ACCGA 97
consensus_8310#4      TGTGCCGGTAACG--TTTCTCCC--GACTGCCTGCAGGTGGCGAC--GAACGTG-ACCGA 72
consensus_8310#0      AGAAAAGGCAACAAAGAAGCAGAAGACGTGCCTGCAGGTGGCGAC--GAACGTG-ACCGA 477
consensus_8310#3      ----CCGCCCACGCGTCCGCGCGCAATATCCACAAGGATGCGGATTTGAAGTTT-TTCGA 55
consensus_8310#1      CGAGGGGTTGGCCTACCCGCTGAAGGGGTTCATGCGCGAACAGGA--GTACCTGCAGTGC 141
                                 *                * *           *    * *  *     * 

consensus_8310#2      GCAGAAGCACAACGTGTCACGGGAGGTGCGCG------GCCAGAACCTTGGGCTGTGCAG 151
consensus_8310#4      GCAGAAGCACAACGTGTCACGGGAGGTGCGCG------GCCAGAACCTTGGGCTGTGCAG 126
consensus_8310#0      GCAGAAGCACAACGTGTCACGGGAGGTGCGCG------GCCAGAACCTTGGGCTGTGCAG 531
consensus_8310#3      GATCTACATCGACACGCCGCTGGAGGTGTGCGAGACGCGCCACACCAAGGGCCTGTACAA 115
consensus_8310#1      GCTGCACTTCAAC-TGTCTGCTGAACTGAGTGACTGAAACTGCTGCTGCTGTCTAATCAG 200
                      *    *   * **  * *    **  ** * *       *     *    * **   ** 

consensus_8310#2      GGGC-TTCCGCGGCTGCACCGTCTGG---CTGACGGGGCTGA------GCGGCGCGGGCA 201
consensus_8310#4      GGGC-TTCCGCGGCTGCACCGTCTGG---CTGACGGGGCTGA------GCGGCGCGGGCA 176
consensus_8310#0      GGGC-TTCCGCGGCTGCACCGTCTGG---CTGACGGGGCTGA------GCGGCGCGGGCA 581
consensus_8310#3      GAAG-GCGCGCCAGGGCGTGATCCAGGGCTTTACGGGCGTGA------CGCAGGCGTACG 168
consensus_8310#1      TCCTGTCCCGATAGTGCTTGTCCTGCTGACCTGAGTGCCTGATAAGCAGCTGNGCTCGCA 260
                              **     **     *           * *  ***           **   * 

consensus_8310#2      AGACGTCGAT-CGCGTT-CGAGCTGGA--AGCGTACCTCGTGTCGAAGGGCATCC-CGGC 256
consensus_8310#4      AGACGTCGAT-CGCGTT-CGAGCTGGA--AGCGTACCTCGTGTCGAAGGGCATCC-CGGC 231
consensus_8310#0      AGACGTCGAT-CGCGTT-CGAGCTGGA--AGCGTACCTCGTGTCGAAGGGCATCC-CGGC 636
consensus_8310#3      AGGCGCCGGA-CGCA-------CCGGA--TCTGCGCGTCATCACGGAGGGTATGA-CGGT 217
consensus_8310#1      GGGGGTCAGTGCACTTTGTCGGCTGCAGTACTGTGCTGTGTGCTGCACTGTGTGTGCTGT 320
                       *  * *    * *        * * *     *  *    *   * *  *  *   * * 

consensus_8310#2      GTACGGGCTGGA---CGGGGACAACATCCGCACCGGGCTGAACAAAAACCTCGGCTTCTC 313
consensus_8310#4      GTACGGGCTCGA---CGGGGACAACATCCGCACCGGGCTGAACAAAAACCTCGGCTTCTC 288
consensus_8310#0      GTACGGGCTCGA---CGGGGACAACATCCGCACCGGGCTGAACAAAAACCTCGGCTTCTC 693
consensus_8310#3      GCTCGAGTCC-A---CGCTGAAGCTGATCAAGCTG--CTGGAGATCGAAACGATCATACC 271
consensus_8310#1      GTGTTTGCTGCAATGCCCTGAGTTCTATCATACCATGCTGCAATAGTGATGTGATGCTGT 380
                      *     *    *   *   **       *   *    *** *                  

consensus_8310#2      GCAGGTCGACCGGGAGGA-AAACATTCGCCG-CGTGGCCGAGGTGGCGAAGCTGTTC--G 369
consensus_8310#4      GCAGGTCGACCGGGAGGA-GAACATTCGCCG-CGTGGCCGAGGTGGCGAAGCTGTTC--G 344
consensus_8310#0      GCAGGTCGACCGGGAGGA-GAACATTCGCCG-CGTGGCCGAGGTGGCGAAGCTGTTC--G 749
consensus_8310#3      GAAGTTCCTGAAGGAGGACGAACCGCTGCCG--GAGCTGTTTGTGGCGAACAGTCTCAAG 329
consensus_8310#1      GTTGTCTGCCCTGGCAGT--TCTGGCCACTGATGCAATCTGTGTGCCCATCCTGTACATT 438
                      *  *        **  *           * *  *        *** * *       *   

consensus_8310#2      CCGACAGTGGCGTCGT---GTCGATCTGCAGCTTCGTGTCGCCGTTCGCGGAGGATCGCG 426
consensus_8310#4      CCGACAGTGGCGTCGT---GTCGA------------------------------------ 365
consensus_8310#0      CCGACAGTGGCGTCGT---GTCGATCTGCAGCTTCGTGTCGCCGTTCGCGGAGGATCGCG 806
consensus_8310#3      ACGGCGCTGGAGGCGGAA-GCCAAAACGCTGCC-CGCGCTGGCGCTCACCGAGGGGGAGC 387
consensus_8310#1      CAAAGATTGATCTACTGATGTCTGTGTGCTGACTATCTTGGGTGTGTGTGTGTGCTGATG 498
                             **          * *                                      

consensus_8310#2      AGATGGCGCGCAAGATCCACAAGGATGCGGATTTGAAGTTTTTCGAGATCTACATCGACA 486
consensus_8310#4      ------------------------------------------------------------
consensus_8310#0      AGATGGCGCGCAAGATCCACAAGGATGCGGATTTGAAGTTTTTCGAGATCTACATCGACA 866
consensus_8310#3      TGCAATGGCTCCAGATACTGGCCGAGGGGTGGGCCTACCCGCTGAAGGGGTTCATGCGCG 447
consensus_8310#1      ATCTGATGTGCA-----CTTGTGATGCTGCATCCANTGTTGTGAACTGACTGGGCTTGGC 553
                                                                                  

consensus_8310#2      CGCCGCTGGAGGTGTGCGAGACGCGCGAC-ACCAAGGGCCTGTACAAGAAGGCGCGCCAG 545
consensus_8310#4      ------------------------------------------------------------
consensus_8310#0      CGCCGCTGGAGGTGTGCGAGACGCGCGAC-ACGAAGGGCCTGTACAAGAAGGCGCGCCAG 925
consensus_8310#3      AACAGGAGTACCTGCAGGCGCTGCACTTC-AACTGTCTGCTGAACGAGGACGAAACGCTG 506
consensus_8310#1      ACTGCCTATATCTGGCTTGACTGCCGAACTGATGGCTTGCTGTGCCAAAGGTTTCCGCTG 613
                                                                                  

consensus_8310#2      GGCGTGATCCAGGGCTTTACGGGCGTGACGCAGGCGTACGAGGCGCCGGACGCACCGGAT 605
consensus_8310#4      ------------------------------------------------------------
consensus_8310#0      GGCGTGATCCAGGGCTTTACGGGCGTGACGCAGGCGTACGAGGCGCCGGACGCACCGGAT 985
consensus_8310#3      CGCGTCAATCAGTCCGTCCCGATAGTGCTGTCCGCGACCGAGGCCGATAAGCAGCGGCTT 566
consensus_8310#1      GACG--GATCAAGGCTGTGACGCCGTGTTTTGCGCTTCCCAGACTTGCGCAATTCCGATC 671
                                                                                  

consensus_8310#2      CTGCGCGTCAGC-ACGGAGGGTATGACGGTGCGCGAGTCCACGCTGAAGCTGATCAAGCT 664
consensus_8310#4      ------------------------------------------------------------
consensus_8310#0      CTGCGCGTCAGC-ACGGAGGGTATGACGGTGCGCGAGTCCACGCTGAAGCTGATCAAGCT 1044
consensus_8310#3      GAGGGGGTCAGT-GCACGTGCGCTGCAGTACGGCGGGCG--------------------- 604
consensus_8310#1      CCACAATTGGGCGACTGCTGCGTTGCTTGATTGNAGCTGACTTGCCTGTCTGGGCAGCTT 731
                                                                                  

consensus_8310#2      GCTGGAGAGCGA------------------------------------------------ 676
consensus_8310#4      ------------------------------------------------------------
consensus_8310#0      GCTGGAGAGCGAAGCGATCATACCGAAGTTCCTGAAGGAGGACGAACCGCTGCCGGAGCT 1104
consensus_8310#3      ------------------------------------------------------------
consensus_8310#1      GCATCGGAGCTGCGGNTACAAGAACCCGGT------------------------------ 761
                                                                                  

consensus_8310#2      ------------------------------------------------------------
consensus_8310#4      ------------------------------------------------------------
consensus_8310#0      GTTTGTGGCGGAAAACCTCAAGACGGCGCTGGAGGCGGAAGCGAAAACGCTGCCCGCGCT 1164
consensus_8310#3      ------------------------------------------------------------
consensus_8310#1      ------------------------------------------------------------
                                                                                  

consensus_8310#2      -------------
consensus_8310#4      -------------
consensus_8310#0      GGCGCTCACCGAG 1177
consensus_8310#3      -------------
consensus_8310#1      -------------
                                   




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)