These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8378#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1069 fasta sequence [CCGCATCGATTCCGAACAAAACGCGAAACGTTAGTGCTATTTTGATCTTGACTAGCAAACAATCATCGATACTG-TTGGACTGTGGCGAAGGAACCGTGGGGCAGATATGGCGAGTTTTTGGGAAAG-AGCAAGCAGAAGAAATCTTGCGATCGATAAAAACGGTCTACATTTCTCACCTACATGCAGATCATCATCTAGGTTTGATTGGTCTGCTACAAGCTCGCAAGAAGCTGTTGGGTGATAACTGTGAACGCTTAACCCTGGTGGCACCGGAGCAAATTTCCTACTGGCTGAGGCTGTACGATTGTCGGTTCGAAACCATCCACAAAGACTATGTGCTTGTAAAGAATGCTGATCTGTTGGAAAATCCTCTACAAGATGAAAAGCTGCTAGCAGTGGGCATCAAGGAGATTGCCACCTGTCGCGTTCGCCACTGTCCCCA-TTCGTTCGGGGTCGCGTTGAAAGTGGCATCGCTTGGAACGCACCCGGAAACGAACATCGAA-GGAGATGTAAAAATCACGTACAGTGGCGACACGATGCCTTGCGAAAGCCTGATCGAGCTGGGCCGTGATTCGACCGTGCTCATACACGAGGCAACGATGGAGGATGAACTAGCAGCGGAGGCACGCATCAAAATGCACAGT-ACACTGTCGCAGGCAATCGAACAGGGCCGTAAAATGAATGCACGATACACGCTGCTAACACACTTTAGCCAGCGGTACGCC-AAAATTCCCCGCCTCCGGCCAGATCAGCAGCAGACGGGCCTGGGCACCGATCTGGGCATTGCCTTCGACAACATGGAAGTAACGCTGGACGATTTGCCAACATTGTGTAAGTTCTATCCCGCCCTAAAAGCCATGTTTATCAGTCACTTTGAGGAAATGGAACAGAAGGCGATAAAGCGGGGCAACAAAAAGTTACGCCTCGAAACGGTTAAAACAGCTACCGGCAGCAAAGAATGTTCGCCAACGCGATGAGTCAGCTTCTGCTACGACATAGAATAGGGATTGGTAAGGAACAATCTTTTAAAATAGTGAAATAAAACATGAAATTAAAAGCAAATTTTCAT] [+] EMBL BM614754 [CCGCATCGATTCCGAACAAAACGCGAAACGTTAGTGCTATTTTGATCTTGACTAGTAAACAATCATCGATACTG TTGGACTGTGGCGAAGGAACCGTGGGGCAGATATGGCGAGTTTTTGGGAAAG AGCAAGCAGAAGAAATCTTGCGATCGATAAAAACGGTCTACATTTCTCACCTACATGCAGATCATCATCTAGGTTTGATTGGTCTGCTACAAGCTCGCAAGAAGCTGTTGGGTGATAACTGTGAACGCTTAACCCTGGTGGCACCGGAGCAAATTTCCTACTGGCTGAGGCTGTACGATTGTCGGTTCGAAACCATCCACAAAGACTATGTGCTTGTAAAGAATGCTGATCTGTTGGAAAATCCTCTACAAGATGAAAAGCTGCTAGCAGTGGGCATCAAGGAGATTGCCACCTGTCGCGTTCGCCACTGTCCCCATTTCGTTCGGGGTCGCGTTGAAAGTGGCATCGCTTGGAACGCACCCGGAAACGAACATCGAA GGAGATGTAAAAATCACGTACAGTGGCGACACGATGCCTTGCGAAAGCCTGATCGAGCTGGGCCGTGATTCGACCGTGCTCATACACGAGGCAACGATGGAGGATGAACTAGCAGCGGAGGCACGCATCAAAATGCACAGTAACACTGTCGCAGGCAATC ] [+] EMBL CNS08VVU [ GTACCATTTTGATCTTGACTAGCAAACAATCATCGATACTG TTGGACTGTGGCGAAGGAACCGTGGGGCAGATATGGCGAGTTTTTGGGAAAG AGCAAGCAGAAGAAATCTTGCGATCGATAAAAACGGTCTACATTTCTCACCTACATGCAGATCATCATCTAGGTTTGATTGGTCTGCTACAAGCTCGCAAGAAGCTGTTGGGTGATAACTGTGAACGCTTAACCCTGGTGGCACCGGAGCAAATTTCCTACTGGCTGAGGCTGTACGATTGTCGGTTCGAAACCATCCACAAAGACTATGTGCTTGTAAAGAATGCTGATCTGTTGGAAAATCCTCTACAAGATGAAAAGCTGCTAGCAGTGGGCATCAAGGAGATTGCCACCTGTCGCGTTCGCCACTGTCCCCA TTCGTTCGGGGTCGCGTTGAAAGTGGCATCGCTTGGAACGCACCCGGAAACGAACATCGAA GGAGATGTAAAAATCACGTACAGTGGCGACACGATGCCTTGCGAAAGCCTGATCGAGCTGGGCCGTGATTCGACCGTGCTCATACACGAGGCAACGATGGAGGATGAACTAGCAGCGGAGGCACGCATCAAAATGCACAGT ACACTGTCGCAGGCAATCGAACAGGGCCGTAAAATGAATGCACGATACACGCTGCTAACACACTTTAGCCAGCGGTACGCCAAAAATTCCCCGCCTCCGGCCAGATCAGCAGCAGACGGGCCTGGGCACCGATCTGGGCATTGCCTTCGACAACATGGAAGTAACGCTGGACGATTTGCCAACATTGTGTAAGTTCTATCCCGCCCTAAAAGCCATGTTTATCAGTCACTTTGAGGAAATGGAACAGAAGGCGATAAAGCGGGGCAACAAAAAGTTACGCCTCGAAACGGTTAAAACAGCTACCGGCAGCAAAGAATGTTCGCCAACGCGATGAGTCAGCTTCTGCTACGACATA ] [+] EMBL CNS08V8K [ GCAAACAATCATCGATACTGTTTGGACTGTGGCGAAGGAACCGTGGGGCAGATATGGCGAGTTTTTGGGAAAGAAGCAAGCAGAAGAAATCTTGCGATCGATAAAAACGGTCTACATTTCTCACCTACATGCAGATCATCATCTAGGTTTGATTGGTCTGCTACAAGCTCGCAAGAAGCTGTTGGGTGATAACTGTGAACGCTTAACCCTGGTGGCACCGGAGCAAATTTCCTACTGGCTGAGGCTGTACGATTGTCGGTTCGAAACCATCCACAAAGACTATGTGCTTGTAAAGAATGCTGATCTGTTGGAAAATCCTCTACAAGATGAAAAGCTGCTAGCAGTGGGCATCAAGGAGATTGCCACCTGTCGCGTTCGCCACTGTCCCCA TTCGTTCGGGGTCGCGTTGAAAGTGGCATCGCTTGGAACGCACCCGGAAACGAACATCGAA GGAGATGTAAAAATCACGTACAGTGGCGACACGATGCCTTGCGAAA CCTGATCGAGCTGGGCCGTGATTCGACCGTGCTCATACACGAGGCAACGATGGAGGATGAACTAGCAGCGGAGGCAC ] [-] EMBL CNS08VVV [ AGAAATCTTGCGATCGATAAAAACGGTCTACATTTCTCACCTACATGCAGATCATCATCTAGGTTTGATTGGTCTGCTACAAGCTCGCAAGAAGCTGTTGGGTGATAACTGTGAACGCTTAACCCTGGTGGCACCGGAGCAAATTTCCTACTGGCTGAGGCTGTACGATTGTCGGTTCGAAACCATCCACAAAGACTATGTGCTTGTAAAGAATGCTGATCTGTTGGAAAATCCTCTACAAGATGAAAAGCTGCTAGCAGTGGGCATCAAGGAGATTGCCACCTGTCGCGTTCGCCACTGTCCCCA TTCGTTCGGGGTCGCGTTGAAAGTGGCATCGCTTGGAACGCACCCGGAAACGAACATCGAA GGAGATGTAAAAATCACGTACAGTGGCGACACGATGCCTTGCGAAAGCCTGATCGAGCTGGGCCGTGATTCGACCGTGCTCATACACGAGGCAACGATGGAGGATGAACTAGCAGCGGAGGCACGCATCAAAATGCACAGT AAACTGTCGCAGGCAATCGAACAGGGCCGTAAAATGAATGCACGATACACGCTGCTTACACACTTTAGCCAGCGGTACGCC AAAATTCCCC CCTCCGGCCAGATCAGCAGCAGACGGGCCTGGGCACCGATCTGGGCATTGCCTTCGACAACATGGAAGTAACGCTGGACGATTTGCCAACATTGTGTAAGTTCTATCCCGCCCTAAAAGCCATGTTTATCAGTCACTTTGAGGAAATGGAACAGAAGGCGATAAAGCGGGGCAACAAAAAGTTACGCCTCGAAACGGTTAAAACAGCTACCGGCAGCAAAGAATGTTCGCCAACGCGATGAGTCAGCTTCTGCTACGACATAGAATAGGGATTGGTAAGGAACAATCTTTTAAAATAGTGAAATAAAACATGAAATTAAAAGCAAATTTTCAT] [+] EMBL BX619154 [ aatnnGTCTACATTTCTCACCTACATGCAGATCATCATCTAGGTTTGATTGGTCTGCTACAAGCTCGCAAGAAGCTGTTGGGTGATAACTGTGAACGCTTAACCCTGGTGGCACCGGAGCAAATTTCCTACTGGCTGAGGCTGTACGATTGTCGGTTCGAAACCATCCACAAAGACTATGTGCTTGTAAAGAATGCTGATCTGTTGGAAAATCCTCTACAAGATGAAAAGCTGCTAGCAGTGGGCATCAAGGAGATTGCCACCTGTCGCGTTCGCCACTGTCCCCA TTCGTTCGGGGTCGCGTTGAAAGTGGCATCGCTTGGAACGCACCCGGAAACGAACATCGAA GGAGATGTAAAAATCACGTACAGTGGCGACACGATGCCTTGCGAAAGCCTGATCGAGCTGGGCCGTGATTCGACCGTGCTCATACACGAGGCAACGATGGAGGATGAACTAGCAGCGGAGGCACGCATCAAAATGCACAGT ACACTGTCGCAGGCAATCGAACAGGGCCGTAANATGAATGCACGATACACGCTGCTAn ] [+] EMBL BX620224 [ GCTCGCAAGAAGCTGTTGGGTGATAACTGTGAACGCTTAACCCTGGTGGCACCGGAGCAAATTTCCTACTGGCTGAGGNTGTACGATTGTCGGTTCGAAACCATCCACAAAGACTATGTGCTTGTAAAGAATGCTGATCTGTTGGAAAATCCTCTACAAGATGAAAAGCTGCTAGCAGTGGGCATCAAGGAGATTGCCACCTGTCGCGTTCGCCACTGTCCCCA TTCGTTCGGGGTCGCGTTGAAAGTGGCATCGCTTGGAACGCACCCGGAAACGAACATCGAA GGAGATGTAAAAATCACGTACAGTGGCGACACGATGCCTTGCGAAAGCCTGATCGAGCTGGGCCGTGATTCGACCGTGCTCATACACGAGGCAACGATGGAGGATGAACTAGCAGCGGAGGCACGCATCAAAATGCACAGT ACACTGTCGCAGGCAATCGAACAGGGCCGTAAAATGAATGCACGATACACGCTGCTAACACACTTTAGCCAGCGGTACGCC AAAATTCCCCGCCTCCGGCCAGATCAGCAGCAGACGGGCCTGGGCACCGATCTGGGCATTGCCTTCGACNACATGGAAGTAACGCTGGA ] [-] EMBL CNS08V8L [ AAACGAAAATCGAACGGAGATGTAAAAATCACGTACAGTGGCGACACGATGCCTTGCGAAAGCCTGATCGAGCTGGGCCGTGATTCGACCGTGCTAATACACGAGGCAACGATGGAGGATGAACTAGCAGCGGAGGCACGCATCAAAATGCACAGT AAACTGTCGCAGGCAATCGAACAGGGCCGTAAAATGAATGCACGATACACGCTGCTTACACACTTTAGCCAGCGGTACGCC AAAATTCCCC CCTCCGGCCAGATCAGCAGCAGACGGGCCTGGGCACCGATCTGGGCATTGCCTTCGACAACATGGAAGTAACGCTGGACGATTTGCCAACATTGTGTAAGTTCTATCCCGCCCTAAAAGCCATGTTTATCAGTCACTTTGAGGAAATGGAACAGAAGGCGATAAAGCGGGGCAACAAAAAGTTACGCCTCGAAACGGTTAAAACAGCTACCGGCAGCAAAGAATGTTCGCCAACGCGATGAGTCAGCTTCTGCTACGACATAGAATAGGGATTGGTAAGGAACAATCTTTTAAAATAGTGAAATAAAACATGAAATTAAAA ] [+] EMBL CNS08N3U [ TTGCGAAACCCTGATCGAGCTGGGCCGTGATTCGACCGTGCTCATACACGAGGCAACGATGGAGGATGAACTAGCAGCGGAGGCACGCATCAAAATGCACAGT ACACTGTCGCAGGCAATCGAACAGGGCCGTAAAATGAATGCACGATACACGCTGCTAACACACTTTAGCCAGCGGTAC CC AAAATTCCCCGCCTCCGGCCAGATCAGCAGCAGACGGGCCTGGGCACCGATCTGGGCATTGCCTTCGACAACATGGAAGTAACGCTGGACGATTTGCCAACATTGTGTAAGTTCTATCCCGCCCTAAAAGCCATGTTTATCAGTCACTTTGAGGAAATGGAACAGAAGGCGATAAAGCGGGGCAACAAAAAGT ] [-] EMBL CNS08N3V [ AGCAAAGAATGTTCGCCAACGCGATGAGTCAGCTTCTGCTACGACATAGAATAGGGATTGGTAAGGAACAATCTTTTAAAATAGTGAAATAAAACATGAAATTA ] consensusID : consensus_8378#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 733 fasta sequence [CTTCCCGCTGCTAAGAGAGGAAAACAATCAGTATGCGGATCCTCCAGCAAACGACACAGATTTGGTGCGATCGTCTTCGCTGAGTTACATGCACATTCGACCACCGAAAGGCATCGATAGAACGCTGGAGGCATCCTTGAATCCGCAAGAGTACCTTAATGAACTGGAGCTGTTACCGGACTTTAAAGAGGCACTTGCTGAATTGAAGCAACAACTCGCACAACACACCGCTCGAAGGTCTGCCGCGGTTAGGGCAGAGCAATTTCCACGCTTAATTTTTCTCGGCACCGGATCATCGATTCCAAACAAAACGCGAAACGTTAGTGCTATTTTGATCTTGACTAGCAAACAATCATCGATACTGTTGGACTGTGGCGAAGGAACCGTGGGACAGATTTGGCGAGTTTTTGGGAAAGAGCAAGCAGAAGAAATCTTGCGATCGATAAAAACGGTCTACATTTCTCACCTACATGCAGATCATCATCTAGGTATGAACATACATTTCAAAATTTTTACAAATTCCTATTGTGAAAGGCTAAAAATTGTATCAATTCATGTCACTTTCAGGTTTGATTGGTCTGTTACAAGCTCGCAAGAAGCTGTTGGGTGATAATTGTGAATGCTTAACTCTGGTGGCACCGGAACAAATTTCCTACTGGCTGAGGCTGTACGATTGTCGGTTCGAAACCATCCACAAAGACTATGTACTTGTAAAGAATGCTGATCTGTTGGA] [+] EMBL BX613532 [CTTCCCGCTGCTAAGAGAGGAAAACAATCAGTATGCGGATCCTCCAGCAAACGACACAGATTTGGTGCGATCGTCTTCGCTGAGTTACATGCACATTCGACCACCGAAAGGCATCGATAGAACGCTGGAGGCATCCTTGAATCCGCAAGAGTACCTTAATGAACTGGAGCTGTTACCGGACTTTAAAGAGGCACTTGCTGAATTGAAGCAACAACTCGCACAACACACCGCTCGAAGGTCTGCCGCGGTTAGGGCAGAGCAATTTCCACGCTTAATTTTTCTCGGCACCGGATCATCGATTCCAAACAAAACGCGAAACGTTAGTGCTATTTTGATCTTGACTAGCAAACAATCATCGATACTGTTGGACTGTGGCGAAGGAACCGTGGGACAGATTTGGCGAGTTTTTGGGAAAGAGCAAGCAGAAGAAATCTTGCGATCGATAAAAACGGTCTACATTTCTCACCTACATGCAGATCATCATCTAGGTATGAACATACATTTCAAAATTTTTACAAATTCCTATTGTGAAAGGCTAAAAATTGTATCAATTCATGTCACTTTCAGGTTTGATTGGTCTGTTACAAGCTCGCAAGAAGCTGTTGGGTGATAATTGTGAATGCTTAACTCTGGTGGCACCGGAACAAATTTCCTACTGGCTGAGGCTGTACGATTGTCGGTTCGAAACCATCCACAAAGACTATGTACTTGTAAAGAATGCTGATCTGTTGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8378#0 CCGCATCGATTCCGAACAAAACGCGAAACGTTAGTGCTATTTTGATCTTGACTAGCAAAC 60 consensus_8378#1 ------------------------------------------------------------ consensus_8378#0 AATCATCGATACTGTTGGACTGTGGCGAAGGAACCGTGGGGCAGATATGGCGAGTTTTTG 120 consensus_8378#1 ------------------------------------------------------------ consensus_8378#0 GGAAAGAGCAAGCAGAAGAAATCTTGCGATCGATAAAAACGGTCTACATTTCTCACCTAC 180 consensus_8378#1 ------------------------------------------------------------ consensus_8378#0 ATGCAGATCATCATCTAGGTTTGATTGGTCTGCTACAAGCTCGCAAGAAGCTGTTGGGTG 240 consensus_8378#1 ------------------------------------------------------------ consensus_8378#0 ATAACTGTGAACGCTTAACCCTGGTGGCACCGGAGCAAATTTCCTACTGGCTGAGGCTGT 300 consensus_8378#1 ---------------------------------------CTTCCCGCTG-CTAAGAGAGG 20 **** *** ** ** * consensus_8378#0 ACGATTGTCGGTT--CGAAACCATCCACAAAGACTATGTGCTTGTAAAGAATGCTGATCT 358 consensus_8378#1 AAAACAATCAGTATGCGGATCCTCCAGCAAACGACACAGATTTG----GTGCGATCGTCT 76 * * ** ** ** * ** * **** * *** * * * *** consensus_8378#0 GTTGGAAAATCCTCTACAAGATGAAAAGCTGCTAGCAGTGGGCATCAAGGAGATTGCCAC 418 consensus_8378#1 -TCGCTGAGTTACATGCACATTCGACCACCGAAAGGCATCGATAGAACGCTGGAGGCATC 135 * * * * * ** * * * * ** * * * * * * ** * consensus_8378#0 CTGTCGCGTTCGCCACTGT-CCCCATTCGTTCGGGGTCGCG-------TTGAAAGTGGCA 470 consensus_8378#1 CT--TGAATCCGCAAGAGTACCTTAATGAACTGGAGCTGTTACCGGACTTTAAAGAGGCA 193 ** * * *** * ** ** * * ** * * ** **** **** consensus_8378#0 TCGCTTGGAACGCACCCGGAAACGAACATCGAAGGAGATGTAAAAATCACGTACAGTGGC 530 consensus_8378#1 CTTGCTGAATTG-AAGCAACAACTCGCACAACACACCGCTCGAAGGTCTGCCGCGGTTAG 252 ** * * * * *** ** * ** ** * ** consensus_8378#0 GACACGATGCCTTGCGAAAGCCTGATCGAGCTGGGCCGTGATTCGACCGTGCTCATACAC 590 consensus_8378#1 GGCAGAGCAATTTCC--ACGCTTAATTTTTCTCGGCACCGGATC-ATCGATTCCAAACAA 309 * ** ** * * ** * ** ** *** * ** * ** ** *** consensus_8378#0 GAGGC--AACGATGGAGGA----TGAACTAGCAGCGGAGGCACGCATCAAAATGCACAGT 644 consensus_8378#1 AACGCGAAACGTTAGTGCTATTTTGATCTTGACTAGCAAACAATCATCGATAC-TGTTGG 368 * ** **** * * * *** ** * * * ** **** * * * consensus_8378#0 ACACTGTCGCAGGCA--ATCGAACAGGGCCGTAAAATGAATGCACGATA-CACGCTGCTA 701 consensus_8378#1 ACTGTGGCGAAGGAACCGTGGGACAGATTTGGCGAGTTTTTGGGAAAGAGCAAGCAGAAG 428 ** ** ** *** * * * **** * * * ** * * ** ** * consensus_8378#0 ACACACTTTAGCCAGCGGTAC--GCCAAAATTCCCCGCCTCCGGCCAGATCAGCAGCAGA 759 consensus_8378#1 AAATCTTGCGATCGATAAAAACGGTCTACATTTCTCACCTACATGCAGATCATCATC--- 485 * * * * * * * * *** * * *** * ******* ** * consensus_8378#0 CGGGCCTGGGCACCGATCTGGGCATTGCCTTCGACAACATGGAAGTAACGCTGGACGATT 819 consensus_8378#1 TAGGTATGAACATACATTTCAAAAT----TTTTACAAATTCCTATTG----TGAAAGGCT 537 ** ** ** ** * ** ** **** * * * ** * * * consensus_8378#0 TGCCAACATTGTGTAAGTTCTATCCCGCCCTAAAAGCCATGTTTATCAGTCACTTTGAGG 879 consensus_8378#1 A---AAAATTGTATCAATTC-ATGTCACTTTCAG-GTTTGATTGGTCTGTTAC------- 585 ** ***** * * *** ** * * * * * ** ** ** ** consensus_8378#0 AAATGGAACAGAAGGCGATAAAGCGGGGCAACAAAAAGTTACGCCTCGAAACGGTTAAAA 939 consensus_8378#1 AAGCTCGCAAGAAGCTGTTGGGTGATAATTGTGAATGCTTAACTCTGGTGGCACCGGAAC 645 ** ***** * * ** *** ** * * ** consensus_8378#0 CAGCTACCGGC-AGCAAAGAATGTTCGCCAACGCGATGAGTCAGCTTCTGCTACGACATA 998 consensus_8378#1 AAATTTCCTACTGGCTGAGGCTGTACGATTGT-CGGTTCGAAACCATCC------ACAAA 698 * * ** * ** ** *** ** ** * * * * ** *** * consensus_8378#0 GAATAGGGATTGGTAAGGAACAATCTTTTAAAATAGTGAAATAAAACATGAAATTAAAAG 1058 consensus_8378#1 GACTATGTACTTGTAAAGAATGCTGATCTGTTGGA------------------------- 733 ** ** * * * **** *** * * * * consensus_8378#0 CAAATTTTCAT 1069 consensus_8378#1 ----------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||