These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8382#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 732 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTCCGGGAATGGAACAATATCGCTCGCACTTCCATATCATTATGGATCTATTTCGTTTACGTTTAAAGTAGTGCGTTGTTTACATTTTCTTCTGTTTTTCGCGCACAATTTCCTTCTTTCCCAATTGTCATCGTCTGAAGAAAGGCTCTGCTGATATCAAAGAATATCTGGGCGTGGGCGACAAAGTTATATTATATCTTTTTGTGTAATGTGATGGCCACAGTTACTGCTACTTCCAACACGATGGTTGCCGAGTTGTGGCGTGAATGTGCCGCCTGGCTCACGCGCTGCAATATAATTCCAAATGACCACCG-TGCCAATCACCTAGACTCGGATATTAAAGTCCTCGCAACCATTCTCCGAGACGGAGTGCTGCTGTGTAATTTAGCAAATTTTTTCGATCCGTCGTCTTTCGATAGAAAAGATTTCAATCGTAAACCTCAAATGGCACACTTTCTTTGCATACAAAATATTAAACTGTTTCTAGAAGCATGCAAAACCAACTTTGGCTTGAAGGAAGCGGATCTGTTCGAACCGACCATGTTGTACGACCTTACCAACTTTCATCGGGTGCTTCTAACTCTATCCAAATTATCAACATGCAGAAAAGTGCAAACTGCAACTAATATACCTGGCTTCATAACTCATTCTGTACAGACAGAGAGGACTAGTTTAGACGATGATATCTACAAAGATCTGCATGCAAGTAC] [+] EMBL BM651719 [CCGCGGACGCGTGGGCGGACGCGTGGGGGAATGGAACAATATCGCTCGCACTTCCATATCATTATGGATCTATTTCGTTTACGTTTAAAGTAGTGCGTTGTTTACATTTTCTTCTGTTTTTCGCGCACAATTTCCTTCTTTCCCAATTGTCATCGTCTGAAGAAAGGCTCTGCTGATATCAAAGAATATCTGGGCGTGGGCGACAAAGTTATATTATATCTTTTTGTGTAATGTGATGGCCACAGTTACTGCTACTTCCAACACAATGGTTGCCGAGATGTGGCGTGAATGTGCCGCCTGGCTCACGCGCTGCAATATAATTCCAAATGACCACCGATGCCAATCACCTAGACTCGGATATTA ] [+] EMBL BM607581 [CCGCGGACGCGTGGGCGGACGCGT GG GGAACAATATCGCTCGCACTTCCATATCATTATGGATCTATTTCGTTTACGTTTAAAGTAGTGCGTTGTTTACATTTTCTTCTGTTTTTCGCGCACAATTTCCTTCTTTCCCAATTGTCATCGTCTGAAGAAAGGCTCTGCTGATATCAAAGAATATCTGGGCGTGGGCGACAAAGTTATATTATATCTTTTTGTGTAATGTGATGGCCACAGTTACTGCTACTTCCAACACGATGGTTGCCGAGTTGTGGCGTGAATGTGCCGCCTGGCTCACGCGCTGCAATATAATTCCAAATGACCACCG TGCCAATCACCTAGACTCGGATATTAAAGTCCTCGCAACCATTCTCCGAGACGGAGTGCTGCTGTGTAATTTAGCAAATTTTTTCGATCCGTCGTCTTTCGATAGAAAAGATTTCAATCGTAAACCTCAAATGGCACACTTTCTTTGCATACAAAATATTAAACTGTTTCTAGAAGCATGCAAAACCAACTTTGGCTTGAAGGAAGCGGATCTGTTCGAACCGACCATGTTGTACGACCTTACCAACTTTCATCGGGTGCTTCTAACTCTATCCAAATTATCAACATGCAGAAAAGTGCAAACTGCAACTAATATACCTGGCTTCATAACTCATTCTGTACAGACAGAGAGGACT ] [+] EMBL BM609703 [ ccgcccACGCGTCCGGGAATGGAACAATATCGCTCGCACTTCCATATCATTATGGATCTATTTCGTTTACGTTTAAAGTAGTGCGTTGTTTACATTTTCTTCTGTTTTTCGCGCACAATTTCCTTCTTTCCCAATTGTCATCGTCTGAAGAAAGGCTCTGCTGATATCAAAGAATATCTGGGCGTGGGCGACAAAGTTATATTATATCTTTTTGTGTAATGTGATGGCCACAGTTACTGCTACTTCCAACACGATGGTTGCCGAGTTGTGGCGTGAATGTGCCGCCTGGCTCACGCGCTGCAATATAATTCCAAATGACCACCG TGCCAATCACCTAGACTCGGATATTAAAGTCCTCGCAACCATTCTCCGAGACGGAGTGCTGCTGTGTAATTTAGCAAATTTTTTCGATCCGTCGTCTTTCGATAGAAAAGATTTCAATCGTAAACCTCAAATGGCACACTTTCTTTGCATACAAAATATTAAACTGTTTCTAGAAGCATGCAAAACCAACTTTGGCTTGAAGGAAGCGGATCTGTTCGAACCGACCATGTTGTACGACCTTACCAACTTTCATCGGGTGCTTCTAACTCTATCCAAATTATCAACATGCAGAAAAGTGCAAACTGCAACTAATATACCTGGCTTCATAACTCATTCTGTACAGACAGAGAGGACTAGTTTAGA ] [+] EMBL BM594048 [ ccgcccACGCGTCC GGAACAATATCGCTCGCACTTCCATATCATTATGGATCTATTTCGTTTACGTTTAAAGTAGTGCGTTGTTTACATTTTCTTCTGTTTTTCGCGCACAATTTCCTTCTTTCCCAATTGTCATCGTCTGAAGAAAGGCTCTGCTGATATCAAAGAATATCTGGGCGTGGGCGACAAAGTTATATTATATCTTTTTGTGTGATGTGATGGCCACAGTTACTGCTACTTCTAACACGATGGTTGCCGAGTTGTGGCGTGAATGTGCCGCCTGGCTCACGCGCTGCAATATAATTCCAAATGACCACCG TGCCAATCACCTAGACTCGGATATTAAAGTCCTCGCAACCATTCTCCGAGACGGAGTGCTGCTGTGTAATTTAGCAAATTTTTTCGATCCGTCGTCTTTCGATAGAAAAGATTTCAATCGTAAACCTCAAATGGCACACTTTCTTTGCATACAAAATATTAAACTGTTTCTAGAAGCATGCAAAACCAACTTTGGCTTGAAGGAAGCGGATCTGTTCGAACCGACCATGTTGTACGACCTTACCAACTTTCATCGGGTGCTTCTAACTCTATCCAAATTATCAACATGCAGAAAAGTGCAAACTGCAACTAATATACCTGGCTTCATAACTCATTCTGTACAGACAGAGAGGACTAGTTTAG ] [+] EMBL BM595110 [ CCGGGAATGGAACAATATCGCTCGCACTTCCATATCATTATGGATCTATTTCGTTTACGTTTAAAGTAGTGCGTTGTTTACATTTTCTTCTGTTTTTCGCGCACAATTTCCTTCTTTCCCAATTGTCATCGTCTGAAGAAAGGCTCTGCTGATATCAAAGAATATCTGGGCGTGGGCGACAAAGTTATATTATATCTTTTTGTGTAATGTGATGGCCACAGTTACTGCTACTTCCAACACGATGGTTGCCGAGTTGTGGCGTGAATGTGCCGCCTGGCTCACGCGCTGCAATATAATTCCAAATGACCACCG TGCCAATCACCTAGACTCGGATATTAAAGTCCTCGCAACCATTCTCCGAGACGGAGTGCTGCTGTGTAATTTAGCAAATTTTTTCGATCCGTCGTCTTTCGATAGAAAAGATTTCAATCGTAAACCTCAAATGGCACACTTTCTTTGCATACAAAATATTAAACTGTTTCTAGAAGCATGCAAAACCAACTTTGGCTTGAAGGAAGCGGATCTGTTCGAACCGACCATGTTGTACGACCTTACCAACTTTCATCGGGTGCTTCTAACTCTATCCAAATTATCAACATGCAGAAAAGTGCAAACTGCAACTAATATACCTGGCTTCATAACTCATTCTGTACAGACAGAGAGGACTAGTTTAGA ] [+] EMBL BM579456 [ CCGGGAATGGAACAATATCGCTCGCACTTCCATATCATTATGGATCTATTTCGTTTACGTTTAAAGTAGTGCGTTGTTTACATTTTCTTCTGTTTTTCGCGCACAATTTCCTTCTTTCCCAATTGTCATCGTCTGAAGAAAGGCTCTGCTGATATCAAAGAATATCTGGGCGTGGGCGACAAAGTTATATTATATCTTTTTGTGTAATGTGATGGCCACAGTTACTGCTACTTCTAACACGATGGTTGCCGAGTTGTGGCGTGAATGTGCCGCCTGGCTCACGCGCTGCAATATAATTCCAAATGACCACCG TGCCAATCACCTAGACTCGGATATTAAAGTCCTCGCAACCATTCTCCGAGACGGAGTGCTGCTGTGTAATTTAGCAAATTTTTTCGATCCGTCGTCTTTCGATAGAAAAGATTTCAATCGTAAACCTCAAATGGCACACTTTCTTTGCATACAAAATATTAAACTGTTTCTAGAAGCATGCAAAACCAACTTTGGCTTGAAGGAAGCGGATCTGTTCGAACCGACCATGTTGTACGACCTTACCAACTTTCATCGGGTGCTTCTAACTCTATCCAAATTATCAACATGCAGAAAAGTGCAAACTGCAACTAATATACCTGGCTTCATAACTCATTCTGTACAGACAGAGAGGACTAG ] [+] EMBL BM577550 [ ccGGAACAATATCGCTCGCACTTCCATATCATTATGGATCTATTTCGTTTACGTTTAAAGTAGTGCGTTGTTTACATTTTCTTCTGTTTTTCGCGCACAATTTCCTTCTTTCCCAATTGTCATCGTCTGAAGAAAGGCTCTGCTGATATCAAAGAATATCTGGGCGTGGGCGACAAAGTTATATTATATCTTTTTGTGTGATGTGATGGCCACAGTTACTGCTACTTCTAACACGATGGTTGCCGAGTTGTGGCGTGAATGTGCCGCCTGGCTCACGCGCTGCAATATAATTCCAAATGACCACCG TGCCAATCACCTAGACTCGGATATTAAAGTCCTCGCAACCATTCTCCGAGACGGAGTGCTGCTGTGTAATTTAGCAAATTTTTTCGATCCGTCGTCTTTCGATAGAAAAGATTTCAATCGTAAACCTCAAATGGCACACTTTCTTTGCATACAAAATATTAAACTGTTTCTAGAAGCATGCAAAACCAACTTTGGCTTGAAGGAAGCGGATCTGTTCGAACCGACCATGTTGTACGACCTTACCAACTTTCATCGGGTGCTTCTAACTCTATCCAAATTATCAACATGCAGAAAAGTGCAAACTGCAACTAATATACCTGGCTTCATAACTCATTCTGTACAGACAGAGAGGACTAGTTTAGACGATGATATCTACAAAGATCTGCATGCAAGTAC] consensusID : consensus_8382#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 679 fasta sequence [ACCGGTGGAAACAAATAGGAATGGAACAATATCGCTCGCACTTCCATATCATTATGGATCTATTTCGTTTACGTTTAAAGTAGTGCGTTGTTTACATTTTCTTCTGTTTTTCGCGCACAATTTCCTTCTTTCCCAATTGTCATCGTCTGAAGAAAGGCTCTGCTGATATCAAAGAATATCTGGGCGTGGGCGACAAAGTTATATTATATCTTTTTGTGTGATGTGATGGCCACAGTTACTGCTACTTCTAACACGATGGTTGCCGAGTTGTGGCGTGAATGTGCCGCCTGGCTCACGCGCTGCAATATAATTCCAAATGACCACCGTGCCAATCACCTAGACTCGGATATTAAAGTCCTCGCAACCATTCTCCGAGACGGAGTGCTGCTGTGTAATTTAGCAAATTTTTTCGATCCGTCGTCTTTCGATAGAAAAGATTTCAATCGTAAACCTCAAATGGCACACTTTCTTTGCATACAAAATATTAAACTGTTTCTAGAAGCATGCAAAACCAACTTTGGCTTGAAGGAAGCGGATCTGTTCGAACCGACCATGTTGTACGACCTTACCAACTTTCATCGGGTGCTTCTAACTCTATCCAAATTATCAACATGCAGAAAAGTGCAAACTGCAACTAATATACCTGGCTTCATAACTCATTCTGTACAGACAGAGAGGA] [+] EMBL BM589717 [ CCGGTGGAAACAAATAGGAATGGAACAATATCGCTCGCACTTCCATATCATTATGGATCTATTTCGTTTACGTTTAAAGTAGTGCGTTGTTTACATTTTCTTCTGTTTTTCGCGCACAATTTCCTTCTTTCCCAATTGTCATCGTCTGAAGAAAGGCTCTGCTGATATCAAAGAATATCTGGGCGTGGGCGACAAAGTTATATTATATCTTTTTGTGTGATGTGATGGCCACAGTTACTGCTACTTCTAACACGATGGTTGCCGAGTTGTGGCGTGAATGTGCCGCCTGGCTCACGCGCTGCAATATAATTCCAAATGACCACCGTGCCAATCACCTAGACTCGGATATTAAAGTCCTCGCAACCATTCTCCGAGACGGAGTGCTGCTGTGTAATTTAGCAAATTTTTTCGATCCGTCGTCTTTCGATAGAAAAGATTTCAATCGTAAACCTCAAATGGCACACTTTCTTTGCATACAAAATATTAAACTGTTTCTAGAAGCATGCAAAACCAACTTTGGCTTGAAGGAAGCGGATCTGTTCGAACCGACCATGTTGTACGACCTTACCAACTTTCATCGGGTGCTTCTAACTCTATCCAAATTATCAACATGCAGAAAAGTGCAAACTGCAACTAATATACCTGGCTTCATAACTCATTCTGTACAGACAGAGAGGA] [+] EMBL BM580400 [acaaGTGGAAACAAATAGGAATGGAACAATATCGCTCGCACTTCCATATCATTATGGATCTATTTCGTTTACGTTTAAAGTAGTGCGTTGTTTACATTTTCTTCTGTTTTTCGCGCACAATTTCCTTCTTTCCCAATTGTCATCGTCTGAAGAAAGGCTCTGCTGATATCAAAGAATATCTGGGCGTGGGCGACAAAGTTATATTATATCTTTTTGTGTGATGTGATGGCCACAGTTACTGCTACTTCTAACACGATGGTTGCCGAGTTGTGGCGTGAATGTGCCGCCTGGCTCACGCGCTGCAATATAATTCCAAATGACCACCGTGCCAATCACCTAGACTCGGATATTAAAGTCCTCGCAACCATTCTCCGAGACGGAGTGCTGCTGTGTAATTTAGCAAATTTTTTCGATCCGTCGTCTTTCGATA ] [+] EMBL BM631296 [ ccGGAACAATATCGCTCGCACTTCCATATCATTATGGATCTATTTCGTTTACGTTTAAAGTAGTGCGTTGTTTACATTTTCTTCTGTTTTTCGCGCACAATTTCCTTCTTTCCCAATTGTCATCGTCTGAAGAAAGGCTCTGCTGATATCAAAGAATATCTGGGCGTGGGCGACAAAGTTATATTATATCTTTTTGTGTGATGTGATGGCCACAGTTACTGCTACTTCTAACACGATGGTTGCCGAGTTGTGGCGTGAATGTGCCGCCTGGCTCACGCGCTGCAATATAATTCCAAATGACCACCGTGCCAATCACCTAGACTCGGATATTAAAGTCCTCGCAACCATTCTCCGAGACGGAGTGCTGCTGTGTAATTTAGCAAATTTTTTCGATCCGTCGTCTTTCGATAGAAAAGATTTCAATCGTAAACCTCAAATGGCACACTTTCTTTGCATACAAAATATTAAACTGTTTC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8382#0 CCGCGGACGCGTGGGCGGACGCGTCCGGGAATGGAACAATATCGCTCGCACTTCCATATC 60 consensus_8382#1 ----------ACCGGTGGAAACAAATAGGAATGGAACAATATCGCTCGCACTTCCATATC 50 ** *** * ********************************* consensus_8382#0 ATTATGGATCTATTTCGTTTACGTTTAAAGTAGTGCGTTGTTTACATTTTCTTCTGTTTT 120 consensus_8382#1 ATTATGGATCTATTTCGTTTACGTTTAAAGTAGTGCGTTGTTTACATTTTCTTCTGTTTT 110 ************************************************************ consensus_8382#0 TCGCGCACAATTTCCTTCTTTCCCAATTGTCATCGTCTGAAGAAAGGCTCTGCTGATATC 180 consensus_8382#1 TCGCGCACAATTTCCTTCTTTCCCAATTGTCATCGTCTGAAGAAAGGCTCTGCTGATATC 170 ************************************************************ consensus_8382#0 AAAGAATATCTGGGCGTGGGCGACAAAGTTATATTATATCTTTTTGTGTAATGTGATGGC 240 consensus_8382#1 AAAGAATATCTGGGCGTGGGCGACAAAGTTATATTATATCTTTTTGTGTGATGTGATGGC 230 ************************************************* ********** consensus_8382#0 CACAGTTACTGCTACTTCCAACACGATGGTTGCCGAGTTGTGGCGTGAATGTGCCGCCTG 300 consensus_8382#1 CACAGTTACTGCTACTTCTAACACGATGGTTGCCGAGTTGTGGCGTGAATGTGCCGCCTG 290 ****************** ***************************************** consensus_8382#0 GCTCACGCGCTGCAATATAATTCCAAATGACCACCGTGCCAATCACCTAGACTCGGATAT 360 consensus_8382#1 GCTCACGCGCTGCAATATAATTCCAAATGACCACCGTGCCAATCACCTAGACTCGGATAT 350 ************************************************************ consensus_8382#0 TAAAGTCCTCGCAACCATTCTCCGAGACGGAGTGCTGCTGTGTAATTTAGCAAATTTTTT 420 consensus_8382#1 TAAAGTCCTCGCAACCATTCTCCGAGACGGAGTGCTGCTGTGTAATTTAGCAAATTTTTT 410 ************************************************************ consensus_8382#0 CGATCCGTCGTCTTTCGATAGAAAAGATTTCAATCGTAAACCTCAAATGGCACACTTTCT 480 consensus_8382#1 CGATCCGTCGTCTTTCGATAGAAAAGATTTCAATCGTAAACCTCAAATGGCACACTTTCT 470 ************************************************************ consensus_8382#0 TTGCATACAAAATATTAAACTGTTTCTAGAAGCATGCAAAACCAACTTTGGCTTGAAGGA 540 consensus_8382#1 TTGCATACAAAATATTAAACTGTTTCTAGAAGCATGCAAAACCAACTTTGGCTTGAAGGA 530 ************************************************************ consensus_8382#0 AGCGGATCTGTTCGAACCGACCATGTTGTACGACCTTACCAACTTTCATCGGGTGCTTCT 600 consensus_8382#1 AGCGGATCTGTTCGAACCGACCATGTTGTACGACCTTACCAACTTTCATCGGGTGCTTCT 590 ************************************************************ consensus_8382#0 AACTCTATCCAAATTATCAACATGCAGAAAAGTGCAAACTGCAACTAATATACCTGGCTT 660 consensus_8382#1 AACTCTATCCAAATTATCAACATGCAGAAAAGTGCAAACTGCAACTAATATACCTGGCTT 650 ************************************************************ consensus_8382#0 CATAACTCATTCTGTACAGACAGAGAGGACTAGTTTAGACGATGATATCTACAAAGATCT 720 consensus_8382#1 CATAACTCATTCTGTACAGACAGAGAGGA------------------------------- 679 ***************************** consensus_8382#0 GCATGCAAGTAC 732 consensus_8382#1 ------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||