These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8386#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1462 fasta sequence [CCGCCCACGCGTCCCCGCTGAAGTGTCACAACAAGTACAAGCGGTACAGACACATCGTTCCCATTTCATCTTCAGCACAGTACAGTTGCAGTAAACAACAAACTCATCTCACCATGAAGTGCTTCGTTGCCATTGCTCTGCTCGCCGTCGCCGTCAGTGCGTCGCCGGTTGAATACGGCCACTATGCTCCCCACGCCCTGGTCCACGCCCCGGTGGCCGTCCATGCTCCGGTGCTGAAGCACGTCGTTGCCGAGCCTGTTGCCTACCCGAAATACTCGTTCAACTATGGCATCAAGGACCCGCATACCGGTGACATCAAGTCGCAGGCCGAGGAGCGCGACGGAGATGTCGTCAAGGGCCAGTACTCGCTGGTT-G-AGCCCGACGGTTCGGTCCGCACCGTCGACTACACCGCCGACGACCACAACGGATTCAACGCCGTCGTCCACAAGTCTGCCCCGGCCGTCCAGAAGGTCATCG-CCGCCCCGGTTGCCCACTACGCTCCGGCCCCCGTCCTGAGCCACTACGTGCACTAAAGTGATACCGCGTCAACACCTCCTCAACGCCAATTTATCCACTTCTGCTAGTAATCGTAGTCATATAAACATAAACACTA--TCTCT--CTGTCTCACGCTCTATCATACACATACTGTTTCCGCGTAGAACGAAGACCAAACGAAGCAATGTTTTGCGAACGGAAGGATGTAGCGTAGCGAACTCACCCAGCTGTCCTAGCGCAAACTAAAGGACGAAAAGCCCAAGCCCAATCTAAGCAAAGACGTACAATCGAGCATTTCGTTCGATGCTTGCGAACACCTGTGTGGAACCATCAGTGGATTTAAATGAGCGCTTTCGGATTTTGCTTTTGTTTGCGCAATGCGCAACAGGCGGCTGCGACGCCACT-GGTTGTCGCCGTGGTGACTTTGCGTCACTCGCGCCTAAATCGCTGCAATCGGTTTCGCACGCCGCTGTAGTGAAGCTTTTTTTGTAAGCTTGCTGCCACTGTCGGAGCCGAAGCGATTGGGTCAGCCCATCCCCTCTTCATCAATATTCCTTCCCTTCGGGAGCTTCTATACAGCTCGTTTCTGGTCTTGCCGGTTGCAGCCACCACTCAAGGTTGTAACCGACATTTCTAATGATCTTCTAGCCTCATCCTCCCTCACCTGGGTACGGGGATCTTACAATGTAGCCAGCCCCTTCCCAAGGATGTGTTGATATTGTGTGTACACCAACGCACACACACACACACACTCTATCTCTCTGTGATCTGTTACCGCTACTGTTACTTACTTTACTTACTTTACTACTACCATCGTTACTACTTGCTATTTGCTGCACAATGCACTGGCAGGGCACCGATCCTGCTGGTAGTCAGGCGCTTTCCTCCAAGCAGCGTTGGCAGCGAAATGCACGAAAATCGTGCTACCTCCTTCCGCTCCGATCCGAGCCCCTGAGCGCCAATGAGGA] [+] EMBL BM642322 [CCGCCCACGCGTCCGCACTGAAGTGTCACAACAAGTACAAGCGGTACAGACACATCGTTCCCA TTCATCTTCAGCACATTACAGTTGCAGTATACAACAAACTCATCTCACCATGAAGTGCTTCGTTGCTATTGCTCTGCTCGCCGTCGCCGTCAGTGCGTCGCCGGTTGAATACGGTCACTATGCTCCCCACGCCCTGGTCCACGCCCCGGTGGCCGTCCATGCTCCGGTGCTGAAGCACGTCGTTGCCGAGCCTGTTGCCTACCCGAAATACTCGTTCAACTACGGCATCAAGGACCCGCATACCGGTGACATCAAGTCGCAGGCCGAGGAGCGCGACGGAGATGTCGTCAAGGGCCAGTACTCGCTGGTT G AGCCCGACGGTTCGGTCCGCACCGTCGACTACACCGCCGACGACCACAACGGATTCAACGCCGTCGTCCACAAGTCTGCCCCGGCCGTCCAGAAGGTCATCG CCGCCCCGGTTGCCCACTACGCTCCGGCCCCCGTCCTGAGCCACTACGTGCACTAAAGTGATACCACGCCAACACCTCCTCAACGCCAATTTATCCACTTCTGCTAGTAATCGTAGTCATATACACATAAACACTA TCTCTCCCTGTCTTACGCTCTATCATACACAAACTGTTTCCGCGTAGAACGAAGACCAAACGAAGCAA ] [+] EMBL BM652608 [ CCGCTGAAGTGTCACAACAAGTACAAGCGGTACAGACACATCGTTCCCA TTCATCTTCAGCACAGTACAGTTGCAGTATACAACAAACTCATCTCACCATGAAGTGCTTCGTTGCCATTGCTCTGCTCGCCGTCGCCGTCAGTGCGTCGCCGGTTGAATACGGCCACTATGCTCCCCACGCCCTGGTCCACGCCCCGGTGGCCGTCCATGCTCCGGTGCTGAAGCACGTCGTTGCCGAGCCTGTTGCATACCCGAAGTACTCGTTCAACTACGGCATCAAGGACCCGCATACCGGTGACATCAAGTCGCAGGCCGAGGAGCGCGACGGAGATGTCGTCAAGGGCCAGTACTCGCTGGTTGG AGCCCGACGGTTCGGTCCGCACCGTCGACTACACCGCCGACGACCACAACGGATTCAACGCCGTCGTCCACAAGTCTGCCCCGGCCGTCCAGAAGGTCATCGCCCGCCCCGGTTGCCCACTACGCTCCGGCCCCCGTCCTGAGCCACTACGTGCACTAAAGTGATACCACGCCAACACCTCCTCAACGCCAATTTATCCACTTCTGCTAGTAATCGTAGTCATATACACATAAACACTATCTCTCT CTGTCTCACGCTCTACCATACACATACTGTTTCCGCGTAGAACGAAGACCAAACGAAGCAATGTTTTGCGAACGGAAGGATGTAGCGTAGCGAACTCACCCAGCTGTCCTAGCGCAA ] [+] EMBL BM644610 [ CCGCTGAAGTGTCACAACAAGTACAAGCGGTACAGACACATCGTTCCCATTTCATCTTCAGCACAGTACAGTTGCAGTAAACAACAAACTCATCTCACCATGAAGTGCTTCGTTGCCATTGCTCTGCTCGCCGTCGCCGTCAGTGCGTCGCCGGTTGAATACGGCCACTATGCTCCCCACGCCCTGGTCCACGCCCCGGTGGCCGTCCATGCTCCGGTGCTGAAGCACGTCGTTGCCGAGCCTGTTGCCTACCCGAAATACTCGTTCAACTATGGCATCAAGGACCCGCATACCGGTGACATCAAGTCGCAGGCCGAGGAGCGCGACGGAGATGTCGTCAAGGGCCAGTACTCGCTGGTT G AGCCCGACGGTTCGGTCCGCACCGTCGACTACACCGCCGACGACCACAACGGATTCAACGCCGTCGTCCACAAGTCTGCCCCGGCCGTCCAGAAGGTCATCG CCGCCCCGGTTGCCCACTACGCTCCGGCCCCCGTCCTGAGCCACTACGTGCACTAAAGTGATACCGCGTCAACACCTCCTCAACGCCAATTTATCCACTTCTGCTAGTAATCGTAGTCATATAAACATAAACACTA TCTCT CTGTCTCACGCTCTATCATACA ] [+] EMBL BM655211 [ CCGCTGAAGTGTCACAACAAGTACAAGCGGTACAGACACATCGTTCCCATTTCATCTTCAGCACAGTACAGTTGCAGTAAACAACAAACTCATCTCACCATGAAGTGCTTCGTTGCCATTGCTCTGCTCGCCGTCGCCGTCAGTGCGTCGCCGGTTGAATACGGCCACTATGCTCCCCACGCCCTGGTCCACGCCCCGGTGGCCGTCCATGCTCCGGTGCTGAAGCACGTCGTTGCCGAGCCTGTTGCCTACCCGAAATACTCGTTCAACTATGGCATCAAGGACCCGCATACCGGTGACATCAAGTCGCAGGCCGAGGAGCGCGACGGAGATGTCGTCAAGGGCCAGTACTCGCTGGTT GCAGCCCGACGGTTCGGTCCGCACCGTCGACTACACCGCCGACGACCACAACGGATTCAACGCCGTCGTCCACAAGTCTGCCCCGGCCGTCCAGAAGGTCATCG CCGCCCCGGTTGCCCACTACGCTCCGGCCCCCGTCCTGAGCCACTACGTGCACTAAAGTGATACCGCGTCAACACCTCCTCAACGCCAATTTATCCACTTCTGCTAGTAATCGTAGTCATATAAACATAAACACT ] [+] EMBL BM657791 [ ccgctcaCTGAAGTGTCACAACAAGTACAAGCGGTACAGACACATCGTTCCCATTTCATCTTCAGCACAGTACAGTTGCAGTAAACAACAAACTCATCTCACCATGAAGTGCTTCGTTGCCATTGCTCTGCTCGCCGTCGCCGTCAGTGCGTCGCCGGTTGAATACGGCCACTATGCTCCCCACGCCCTGGTCCACGCCCCGGTGGCCGTCCATGCTCCGGTGCTGAAGCACGTCGTTGCCGAGCCTGTTGCCTACCCGAAATACTCGTTCAACTATGGCATCAAGGACCCGCATACCGGTGACATCAAGTCGCAGGCCGAGGAGCGCGACGGAGATGTCGTCAAGGGCCAGTACTCGCTGGTT G AGCCCGACGGTTCGGTCCGCACCGTCGACTACACCGCCGACGACCACAACGGATTCAACGCCGTCGTCCACAAGTCTGCCCCGGCCGTCCAGAAGGTCATCG CCGCCCCGGTTGCCCACTACGCTCCGGCCCCCGTCCTGAGCCACTACGTGCACTAAAGTGATACCGCGTCAACACCTCCTCAACGCCAATTTATCCACTTCTGCTAGTAATCGTAGTCATATAAACATAAACACTA TCTCT CTGTCTCACGCTCTATCATACACATACTGTTTCCGCGTAGAACGAAGACCAAACGAAGCAATGTTTTGCGAACGGAAGGATGT ] [+] EMBL BX614257 [ AAGCGGTACAGACACATCGTTCCCATTTCATCTTCAGCACAGTACAGTTGCAGTAAACAACAAACTCATCTCACCATGAAGTGCTTCGTTGCCATTGCTCTGCTCGCCGTCGCCGTCAGTGCGTCGCCGGTTGAATACGGCCACTATGCTCCCCACGCCCTGGTCCACGCCCCGGTGGCCGTCCATGCTCCGGTGCTGAAGCACGTCGTTGCCGAGCCTGTTGCCTACCCGAAATACTCGTTCAACTATGGCATCAAGGACCCGCATACCGGTGACATCAAGTCGCAGGCCGAGGAGCGCGACGGAGATGTCGTCAAGGGCCAGTACTCGCTGGTT G AGCCCGACGGTTCGGTCCGCACCGTCGACTACACCGCCGACGACCACA ] [+] EMBL BM656181 [ ccgCGAAATACTCGTTCAACTATGGCATCAAGGACCCGCATACCGGTGACATCAAGTCGCAGGCCGAGGAGCGCGACGGAGATGTCGTCAAGGGCCAGTACTCGCTGGTT G AGCCCGACGGTTCGGTCCGCACCGTCGACTACACCGCCGACGACCACAACGGATTCAACGCCGTCGTCCACAAGTCTGCCCCGGCCGTCCAGAAGGTCATCG CCGCCCCGGTTGCCCACTACGCTCCGGCCCCCGTCCTGAGCCACTACGTGCACTAAAGTGATACCGCGTCAACACCTCCTCAACGCCAATTTATCCACTTCTGCTAGTAATCGTAGTCATATAAACATAAACACTA TCTCT CTGTCTCACGCTCTATCATACACATACTGTTTCCGCGTAGAACGAAGACCAAACGAAGCAATGTTTTGCGAACGGAAGGATGTAGCGTAGCG ACTCACCCAGCTGTCCTAGCGCCTACTAAAGGACGAAAAGCCCAAGCCCAATCTAAGCAAAGACGTACAATCGAGCATTTCGTTCGATGCTTGCGAACACCTGTGTGGAACCATCAGTGGATTTAAATGAGCGCTTTCGGATTTTGCTTTTGTTTGCGCAATGCGCAACAGGCGGCTGCGACGCCACTGGGTTGTCGCCGTGGTGACTTTGCGTCACTCGCGCCTAAATCGCTGCAATC ] [+] EMBL BX613530 [ GACGAAAAGCCCAAGCCCAATCTAAGCAAAGACGTACAATCGAGCATTTCGTTCGATGCTTGCGAACACCTGTGTGGAACCATCAGTGGATTTAAATGAGCGCTTTCGGA TTTGCTTTTGTTTGCGCAATGCGCAACAGGCGGCTGCGACGCCACT GGTTGTCGCCGTGGTGACTTTGCGTCACTCGCGCCTAAATCGCTGCAATCGGTTTCGCACGCCGCTGTAGTGAAGCTTTTTTTGTAAGCTTGCTGCCACTGTCGGAGCCGAAGCGATTGGGTCAGCCCATCCCCTCTTCATCAATATTCCTTCCCTTCGGGAGCTTCTATACAGCTCGTTTCTGGTCTTGCCGGTTGCAGCCACCACTCAAGGTTGTAACCGACATTTCTAATGATCTTCTAGCCTCATCCTCCCTCACCTGGGTACGGGGATCTTACAATGTAGCCAGCCCCTTCCCAAGGATGTGTTGATATTGTGTGTACACCAACGCACACACACACACACACTCTATCTCTCTGTGATCTGTTACCGCTACTGTTACTTACTTTACTTACTTTACTACTACCATCGTTACTACTTGCTATTTGCTGCACAATGCACTGGCAGGGCACCGATCCTGCTGGTAGTCAGGCGCTTTCCTCCAAGCAGCGTTGGCAGCGAAATGCACGAAAATCGTGCTACCTCCTTCCGCTCCGATCCGAGCCCCTGAGCGCCAATGAGGA] [+] EMBL BX614324 [ GCAACAGGCGGCTGCGACGCCACT GGTTGTCGCCGTGGTGACTTTGCGTCACTCGCGCCTAAATCGCTGCAATCGGTTTCGCACGCCGCTGTAGTGAAGCTTTTTTTGTAAGCTTGCTGCCACTGTCGGAGCCGAAGCGATTGGGTCAGCCCATCCCCTCTTCATCAATATTCCTTCCCTTCGGGAGCTTCTATACAGCTCGTTTCTGGTCTTGCCGGTTGCAGCCACCACTCAAGGTTGTAACCGACATTTCTAATGATCTTCTAGCCTCATCCTCCCTCACCTGGGTACGGGGA ] consensusID : consensus_8386#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 82 fasta sequence [AGGAGGTAGCGAAGCGACTCACCCAGCTGTCCTAGCGCCTACAAAAGGACGAAAAGCCCAAGCCCAATCTAAGCAAAGACGT] [+] EMBL BX608020 [AGGAGGTAGCGAAGCGACTCACCCAGCTGTCCTAGCGCCTACAAAAGGACGAAAAGCCCAAGCCCAATCTAAGCAAAGACGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8386#0 CCGCCCACGCGTCCCCGCTGAAGTGTCACAACAAGTACAAGCGGTACAGACACATCGTTC 60 consensus_8386#1 ------------------------------------------------------------ consensus_8386#0 CCATTTCATCTTCAGCACAGTACAGTTGCAGTAAACAACAAACTCATCTCACCATGAAGT 120 consensus_8386#1 ------------------------------------------------------------ consensus_8386#0 GCTTCGTTGCCATTGCTCTGCTCGCCGTCGCCGTCAGTGCGTCGCCGGTTGAATACGGCC 180 consensus_8386#1 ------------------------------------------------------------ consensus_8386#0 ACTATGCTCCCCACGCCCTGGTCCACGCCCCGGTGGCCGTCCATGCTCCGGTGCTGAAGC 240 consensus_8386#1 ------------------------------------------------------------ consensus_8386#0 ACGTCGTTGCCGAGCCTGTTGCCTACCCGAAATACTCGTTCAACTATGGCATCAAGGACC 300 consensus_8386#1 ------------------------------------------------------------ consensus_8386#0 CGCATACCGGTGACATCAAGTCGCAGGCCGAGGAGCGCGACGGAGATGTCGTCAAGGGCC 360 consensus_8386#1 ------------------------------------------------------------ consensus_8386#0 AGTACTCGCTGGTTGAGCCCGACGGTTCGGTCCGCACCGTCGACTACACCGCCGACGACC 420 consensus_8386#1 ------------------------------------------------------------ consensus_8386#0 ACAACGGATTCAACGCCGTCGTCCACAAGTCTGCCCCGGCCGTCCAGAAGGTCATCGCCG 480 consensus_8386#1 ------------------------------------------------------------ consensus_8386#0 CCCCGGTTGCCCACTACGCTCCGGCCCCCGTCCTGAGCCACTACGTGCACTAAAGTGATA 540 consensus_8386#1 ------------------------------------------------------------ consensus_8386#0 CCGCGTCAACACCTCCTCAACGCCAATTTATCCACTTCTGCTAGTAATCGTAGTCATATA 600 consensus_8386#1 ------------------------------------------------------------ consensus_8386#0 AACATAAACACTATCTCTCTGTCTCACGCTCTATCATACACATACTGTTTCCGCGTAGAA 660 consensus_8386#1 ------------------------------------------------------------ consensus_8386#0 CGAAGACCAAACGAAGCAATGTTTTGCGAACGGAAGGATGTAGCGTAGCGAACTCACCCA 720 consensus_8386#1 ----------------------------------AGGAGGTAGCGAAGCGA-CTCACCCA 25 **** ****** ***** ******** consensus_8386#0 GCTGTCCTAGCGCAAACTAAAGGACGAAAAGCCCAAGCCCAATCTAAGCAAAGACGTACA 780 consensus_8386#1 GCTGTCCTAGCGCCTACAAAAGGACGAAAAGCCCAAGCCCAATCTAAGCAAAGACGT--- 82 ************* ** *************************************** consensus_8386#0 ATCGAGCATTTCGTTCGATGCTTGCGAACACCTGTGTGGAACCATCAGTGGATTTAAATG 840 consensus_8386#1 ------------------------------------------------------------ consensus_8386#0 AGCGCTTTCGGATTTTGCTTTTGTTTGCGCAATGCGCAACAGGCGGCTGCGACGCCACTG 900 consensus_8386#1 ------------------------------------------------------------ consensus_8386#0 GTTGTCGCCGTGGTGACTTTGCGTCACTCGCGCCTAAATCGCTGCAATCGGTTTCGCACG 960 consensus_8386#1 ------------------------------------------------------------ consensus_8386#0 CCGCTGTAGTGAAGCTTTTTTTGTAAGCTTGCTGCCACTGTCGGAGCCGAAGCGATTGGG 1020 consensus_8386#1 ------------------------------------------------------------ consensus_8386#0 TCAGCCCATCCCCTCTTCATCAATATTCCTTCCCTTCGGGAGCTTCTATACAGCTCGTTT 1080 consensus_8386#1 ------------------------------------------------------------ consensus_8386#0 CTGGTCTTGCCGGTTGCAGCCACCACTCAAGGTTGTAACCGACATTTCTAATGATCTTCT 1140 consensus_8386#1 ------------------------------------------------------------ consensus_8386#0 AGCCTCATCCTCCCTCACCTGGGTACGGGGATCTTACAATGTAGCCAGCCCCTTCCCAAG 1200 consensus_8386#1 ------------------------------------------------------------ consensus_8386#0 GATGTGTTGATATTGTGTGTACACCAACGCACACACACACACACACTCTATCTCTCTGTG 1260 consensus_8386#1 ------------------------------------------------------------ consensus_8386#0 ATCTGTTACCGCTACTGTTACTTACTTTACTTACTTTACTACTACCATCGTTACTACTTG 1320 consensus_8386#1 ------------------------------------------------------------ consensus_8386#0 CTATTTGCTGCACAATGCACTGGCAGGGCACCGATCCTGCTGGTAGTCAGGCGCTTTCCT 1380 consensus_8386#1 ------------------------------------------------------------ consensus_8386#0 CCAAGCAGCGTTGGCAGCGAAATGCACGAAAATCGTGCTACCTCCTTCCGCTCCGATCCG 1440 consensus_8386#1 ------------------------------------------------------------ consensus_8386#0 AGCCCCTGAGCGCCAATGAGGA 1462 consensus_8386#1 ---------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||