These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8415#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 920 fasta sequence [ACACCATCCNGAGGCAAGAATCCCCCGAGTGTTCTGGTTCAACTACACCTGGAAGATGTAATCTTTAGCACTGGGAAAGAAAACTTAACTGAAAATGCTTGCCTGTAAGACCTGTCAATGAAGATACTAGCTGCAGATGCTAACCTGCTGGCTCTGCATAAATACCCCAATAAACAGACCATTTTGGGGCTGGGTGAACATGATGTTCAACCGGGTCGATCGCGCTAGACTGAAGAAGGTTGGTCCCGACCGACTATATGTGCCGAATGGTTTGCTAAAGAATGGACGCGAAATGCAAAGTTCTGTCGAAGGACTGCCCTGTGTGCATTGTGCATTTTTAACGCACTTCCTGGACTGAGTCCTTGCCTGGTGCTAATGGAAGAACTCGATGGGACCGTGATTCGGGCATTAATGCCACATTTGGGTATCGATCATCTGGGAGCGGATTGAGTCGGCTCAGGANAGTNTGTCCTCCATAACTGTGTCTACATCGACAATCAAGCTCTGTGCGAAGCTGCGATACGTATGCCAATACGCTGGNGGAGTTGCCAAATTTCCAAGTGTGGCAATGTCACCGATGCCGGATTGCTACAGCTCAAACAGCTCCCTCAGCTACAACAGGTGACAAACGTTCGATTTGCCTGATGTGAAAAATATACAGGCAAGTGGAAAAAACGCTCAAACCAAGCACTTCCCAACTGCCAATTCGATATGNAGCCATAGCCACAAAACGTCGAGCATCTGTCACGTATACTTGGTACCATCCTAGCGCAATCGCCGCCATACAGGTCAAACTTTAATNAACNCNATNACGCACAAGAGCATGTAGTCGAACCCCAAGTGCACAACACACAACAACAANCANNACAACANCACACAGGGCNATGTTGACGAACCCGCAAAGCNNCATACCCCATATA] [+] EMBL AL930745 [ACACCATCCNGAGGCAAGAATCCCCCGAGTGTTCTGGTTCAACTACACCTGGAAGATGTAATCTTTAGCACTGGGAAAGAAAACTTAACTGAAAATGCTTGCCTGTAAGACCTGTCAATGAAGATACTAGCTGCAGATGCTAACCTGCTGGCTCTGCATAAATACCCCAATAAACAGACCATTTTGGGGCTGGGTGAACATGATGTTCAACCGGGTCGATCGCGCTAGACTGAAGAAGGTTGGTCCCGACCGACTATATGTGCCGAATGGTTTGCTAAAGAATGGACGCGAAATGCAAAGTTCTGTCGAAGGACTGCCCTGTGTGCATTGTGCATTTTTAACGCACTTCCTGGACTGAGTCCTTGCCTGGTGCTAATGGAAGAACTCGATGGGACCGTGATTCGGGCATTAATGCCACATTTGGGTATCGATCATCTGGGAGCGGATTGAGTCGGCTCAGGANAGTNTGTCCTCCATAACTGTGTCTACATCGACAATCAAGCTCTGTGCGAAGCTGCGATACGTATGCCAATACGCTGGNGGAGTTGCCAAATTTCCAAGTGTGGCAATGTCACCGATGCCGGATTGCTACAGCTCAAACAGCTCCCTCAGCTACAACAGGTGACAAACGTTCGATTTGCCTGATGTGAAAAATATACAGGCAAGTGGAAAAAACGCTCAAACCAAGCACTTCCCAACTGCCAATTCGATATGNAGCCATAGCCACAAAACGTCGAGCATCTGTCACGTATACTTGGTACCATCCTAGCGCAATCGCCGCCATACAGGTCAAACTTTAATNAACNCNATNACGCACAAGAGCATGTAGTCGAACCCCAAGTGCACAACACACAACAACAANCANNACAACANCACACAGGGCNATGTTGACGAACCCGCAAAGCNNCATACCCCATATA] consensusID : consensus_8415#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 800 fasta sequence [GGCAGATCGGCACGTGNACACAATTGGCTGCCGGTTCAACTACACCGGAAGATGTAATCTTTGGCACGGGAAAGAAAACTTAACGAAAATGCTTACCGTAAGACCGTTAACGAAGTTACTAGCGCAGATGCAACCGCTGGCTCTGCAAAAAACCCCAATAAACAGACCATTTTGGGGCTGGGTGAACATGATGTTCAACCGGGTCGATCGCGCTAGACTGAAGAAGGTTGGCCCCGACCGACTTTGTGCCGAATGGTTGCTAAAGAATGGAGCGAAAGCAAAGTTTGTGAAGGACGCCCGTGTGCATGTGCATTTTAACGCACTTCCGGACGAGTCCTTGCCGGTGCTAATGGAAGAACTCGATGGGACGGATTCGGGCATAATGCACATTGGGTTCGATCATCTGGAAGGATTGAATCGGCTCAGGAAAGTTGTCCTCCATAACTGTGTCTACATCGACAATCAAGCTCTGTGGAA-GCTGCGATACGTTGCCAA-TAC-GCTGGAGGAG-TTGCAAATTT-CCA-AGTGTGGCA--ATGTCACCGA-TG-CCGGATTG-CTACAGCT-CAAA-C-AGCTCCCTCAGCT-ACAA-CAGGTGAAA---ACGTTCGAATTG-CCTGA-TGTGAA-AAATATACAGGAAGTGGAAAAAACGCTC-AAACAAGCACTTCCCAACTGCAAATTCGATATGAAGCCATAGAAAAAACGTCGAGATTGTACGTAGAATTGGTACCATCTAGCGCAATCGCCGCATACAGCGTCTAACTTAATAAAAATAGCACAGAGATGTGGTGACCCAGTGCAAAAAAAAAAAAAAA] [+] EMBL BX468087 [GGCAGATCGGCACGTGNACACAATTGGCTG CGGTTCAACTACACCGGAAGATGTAATCTTTGGCACGGGAAAGAAAACTTAACGAAAATGCTTACCGTAAGACCGTTAACGAAGTTACTAGCGCAGATGCAACCGCTGGCTCTGCAAACAACCCCAATGAACAGACCATTTTGGGGCTGGGTGAACATGATGTTCAACCGGGTCGATCGCGCTAGACTGAAGAAGGTTGGTCCCGACCGACTTTGTGCCGAATGGTTGCTAAAGAATGGAGCGAAAGCAAAGTTTGTGAAGGACGCCCGTGTGCATGTGCATTTTAACGCACTTCCGGACGAGTCCTTGCCGGTGCTAATGGAAGAACTCGATGGGACGGATTCGGGCATAATGCACATTGGGTTCGATCATCTGGAGGGATTGAGTCGGCTCAGGAAAGTTGTCCTCCATAACTGTGTCTACATCGACAATCAAGCTCTGTGGAAGGCTGCGATACGTTGCCAANTACGGCTGGAGGAGNTTGCAAATTTCCCACAGTGTGGCAAGATGTCACCGANTGCCCGGATTGACTACAGCTCCAAANCAAATTCCCTCAGCTAACAACCAGGTGAAAAANACGTTCGATTTGACCTCACTGTGAACAAAAATAtccacg ] [+] EMBL BM650256 [ ccgCACAATTGGCTGCCGGTTCAACTACACCGGAAGATGTAATCTTTGGCACGGGAAAGAAAACTTAACGAAAATGCTTACCGTAAGACCGTTAACGAAGTTACTAGCGCAGATGCAACCGCTGGCTCTGCAAAAAACCCCAATAAACAGACCATTTTGGGGCTGGGTGAACATGATGTTCAACCGGGTCGATCGCGCTAGACTGAAGAAGGTTGGCCCCGACCGACTTTGTGCCGAATGGTTGCTAAAGAATGGAGCGAAAGCAAAGTTTGTGAAGGACGCCCGTGTGCATGTGCATTTTAACGCACTTCCGGACGAGTCCTTGCCGGTGCTAATGGAAGAACTCGATGGGACGGATTCGGGCATAATGCACATTGGGTTCGATCATCTGGAAGGATTGAATCGGCTCAGGAAAGTTGTCCTCCATAACTGTGTCTACATCGACAATCAAGCTCTGTGGAA GCTGCGATACGTTGCCAA TAC GCTGGAGGAG TTGCAAATTT CCA AGTGTGGCA ATGTCACCGA TG CCGGATTG CTACAGCT CAAA C AGCTCCCTCAGCT ACAA CAGGTGAAA ACGTTCGAATTG CCTGA TGTGAA AAATATACAGGAAGTGGAAAAAACGCTC AAACAAGCACTTCCCAACTGCAAATTCGATATGAAGCCATAGAAAAAACGTCGAGATTGTACGTAGA ] [+] EMBL BM577471 [ ccgGCCGGTTCAACTACACCGGAAGATGTAATCTTTAGCACGGGAAAGAAAACTTAACGAAAATGCTTGCCGTAAGACCGTCAATGAAGATACTAGCGCAGATGCAACCGCTGGCTCTGCATAAAACCCCAATAAACAGACCATTTTGGGGCTGGGTGAACATGATGTTCAACCGGGTCGATCGCGCTAGACTGAAGAAGGTTGGTCCCGACCGACTTTGTGCCGAATGGTTGCTAAAGAATGGAGCGAAAGCAAAGTTTGTGAAGGACGCCCGTGTGCATGTGCATTTTAACGCACTTCCGGACGAGTCCTTGCCGGTGCTAATGGAAGAACTCGATGGGACGGATTCGGGCATAATGCACATTGGGTTCGATCATCTGGAGGGATTGAGTCGGCTCAGGAAAGTTGTCCTCCATAACTGTGTCTACATCGACAATCAAGCTCTGTGGAA GCTGCGATACGTTGCCAA TAC GCTGGAGGAG TTGCAAATTT CCA AGTGTGGCA ATGTCACCGA TG CCGGATTG CTACAGCT CAAA C AGCTCCCTCAGCT ACAA CAGGTGAAA ACGTTCGATTTG CCTGA TGTGAA AAATATACAGGAAGTGGAAAAAACGCTC AAACAAGCACTTCCCAACTGCCAATTCGATATGAAGCCATAGAAAAAACGTCGAGATTGTACGTATAATTGGTACCATCTAGCG ] [+] EMBL BX629067 [ TCAACTACACCGGAAGATGTAATCTTTGGCACGGGAAAGAAAACTTAACGAAAATGCTTACCGTAAGACCGTTAACGAAGTTACTAGCGCAGATGCAACCGCTGGCTCTGCAAACAACCCCAATGAACAGACCATTTTGGGGCTGGGTGAACATGATGTTCAACCGGGTCGATCGCGCTAGACTGAAGAAGGTTGGTCCCGACCGACTTTGTGCCGAATGGTTGCTAAAGAATGGAGCGAAAGCAAAGTTTGTGAAGGACGCCCGTGTGCATGTGCATTTTAACGCACTTCCGGACGAGTCCTTGCCGGTGCTAATGGAAGAACTCGATGGGACGGATTCGGGCATAATGCACATTGGGTTCGATCATCTGGAGGGATTGAGTCGGCTCAGGAAAGTTGTCCTCCATAACTGTGTCTACATCGACAATCAAGCTCTGTGGAA GCTGCGATACGTTGCCAA TAC GCTGGAGGAG TTGCAAATTT CCA AGTGTGGCA ATGTCACCGA TG CCGGATTG CTACAGCT CAAA C AACTCCCTCAGCT ACAA CAGGTGAAA ACGTTCGATTTG CCTGA TGTGAA AAATATACAAGAAGTGGAAAAAACGCTC AAACAAGCACTTCCCAACTGCAAATTCGATATGAAGCCATAGAAAAAACGTCGAGATTGTACGTAGAATTGGTACCATCTAGCGCAATCGCCGCATACAGGGTCTAACTTAAT ] [+] EMBL BX608756 [ CTTTGGCACGGGAAAGAAAACTTAACGAAAATGCTTACCGTAAGACCGTTAACGAAGTTACTAGCGCAGATGCAACCGCTGGCTCTGCAAAAAACCCCAATAAACAGACCATTTTGGGGCTGGGTGAACATGATGTTCAACCGGGTCGATCGCGCTAGACTGAAGAAGGTTGGCCCCGACCGACTTTGTGCCGAATGGTTGCTAAAGAAT GAGCGAAAGCAAAGTTTGTGAAGGACGCCCGTGTGCATGTGCATTTTAACGCACTTCCGGACGAGTCCTTGCCGGTGCTAATGGAAGAACTCGATGGGACGGATTCGGGCATAATGCACATTGGGTTCGATCATCTGGAAGGATTGAATCGGCTCAGGAAAGTTGTCCTCCATAACTGTGTCTACATCGACAATCAAGCTCTGTGGAA GCTGCGATACGTTGCCAA TAC GCTGGAGGAG TTGCAAATTT CCA AGTGTGGCA ATGTCACCGA TG CCGGATTG CTACAGCT CAAA C AGCTCCCTCAGCT ACAA CAGGTGAAA ACGTTCGAATTG CCTGA TGTGAA AAATATACAGGAAGTGGAAAAAACGCTC AAACAAGCACTTCCCAACTGCAAATTCGATATGAAGCCATAGAAAAAACGTCGAGATTGTACGTAGAATTGGTACCATCTAGCGCAATCGCCGCATACAGCGT TAACTTAATAAAAATAGCACAGAGATGTGGT ] [+] EMBL BX624758 [ ACCGCTGGCTCTGCAAAAAACCCCAATAAACAGACCATTTTGGGGCTGGGTGAACATGATGTTCAACCGGGTCGATCGCGCTAGACTGAAGAAGGTTGGCCCCGACCGACTTTGTGCCGAATGGTTGCTAAAGAATGGAGCGAAAGCAAAGTTTGTGAAGGACGCCCGTGTGCATGTGCATTTTAACGCACTTCCGGACGAGTCCTTGCCGGTGCTAATGGAAGAACTCGATGGGACGGATTCGGGCATAATGCACATTGGGTTCGATCATCTGGAAGGATTGAATCGGCTCAGGAAAGTTGTCCTCCATAACTGTGTCTACATCGACAATCAAGCTCTGTGGAA GCTGCGATACGTTGCCAA TAC GCTGGAGGAG TTGCAAATTT CCA AGTGTGGCA ATGTCACCGA TG CCGGATTG CTACAGCT CAAA C AGCTCCCTCAGCT ACAA CAGGTGAAA ACGTTCGAATTG CCTGA TGTGAA AAATATACAGGAAGTGGAAAAAACGCTC AAACAAGCACTTCCCAACTGCAAATTCGATATGAAGCCATAGAAAAAACGTCGAGATTGTACGTAGAATTGGTACCATCTAGCGCAATCGCCGCATACAGCGTCTAACTTAATAAAAATAGCACAGAGATGTGGT ] [+] EMBL AGA283136 [ CAGACCATTTTGGGGCTGGGTGAACATGATGTTCAACCGGGTCGATCGCGCTAGACTGAAGAAGGTTGGCCCCGACCGACTTTGTGCCGAATGGTTGCTAAAGAATGGAGCGAAAGCAAAGTTTGTGAAGGACGCCCGTGTGCATGTGCATTTTAACGCACTTCCGGACGAGTCCTTGC ] [-] EMBL AGA281547 [ AGAACTCGATGGGACGGATTCGGGCATAATGCACATTGGGTTCGATCATCTGGAAGGATTGAATCGGCTCAGGAAAGTTGTCCTCCATAACTGTGTCTACATCGACAATCAAGCTCTGTGGAA GCTGCGATACGTTGCCAA TAC GCTGGAGGAG TTGCAAATTT CCA AGTGTGGCA ATGTCACCGA TG CCGGATTA ATACAGCT CAAA C AGCTCCCTCAGCT ACAA CAGGTGAAA ACGTTCGAATTG CCTGA TGTGAA AAATATACNGGAAGTGG NNNNNNNNTCAAAACAAGCACTTCCCAACTGCAAATTCGATATGAAGCCATAGAAAAAACGTCGAGATTGTACGTAGAATTGGTACCATCTAGCGCAATCGCCGCATACAGCGTCTAACTTAATAAAAATAGCACAGAGATGTGGTGACCCAGTGCAAAAAAAAAAAAAAA] [-] EMBL AGA281545 [ GTTCGATCATCTGGAAGGATTG ATCGGCTCAGGAAAGTTGTCCTCCATAACTGTGTCTACATCGACAATCAAGCTCTGTGGAA GCTGCGATACGTTGCCAA TAC GCTGGAGGAG TTGCAAATTT CCA AGTGTGGC CTGTCCCCGG TG CCGGATTG CTACAGCT CAAA C AGCTCCCTCAGCT ACAA CAGGTGAAA ACGTTCGAATTG CCTGA TGTGAA AAATATACAGGAAGTGGAAAAAACGCTC AAACAAGCACTTCCCAACTGCAAATTCGATATGAAGCCATAGAAAAAACGTCGAGATTGTACGTAGAATTGGTACCATCTAGCGCAATCGCCGCATACAGCGTCTAACTTAATAAAAATAGCACAGAGATGTGGTGACCCAGTGCAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8415#0 ACACCATCCNGAGGCAAGAATCCCCCGAGTGTTCTGGTTCAACTACACCTGGAAGATGTA 60 consensus_8415#1 --GGCAGATCGGCACGTGNACACAATTGGC-TGCCGGTTCAACTACACC-GGAAGATGTA 56 ** * * * * * * * * ************** ********** consensus_8415#0 ATCTTTAGCACTGGGAAAGAAAACTTAACTGAAAATGCTTGCCTGTAAGACCTGTCAATG 120 consensus_8415#1 ATCTTTGGCAC-GGGAAAGAAAACTTAAC-GAAAATGCTTACC-GTAAGACC-GTTAACG 112 ****** **** ***************** ********** ** ******** ** ** * consensus_8415#0 AAGATACTAGCTGCAGATGCTAACCTGCTGGCTCTGCATAAATACCCCAATAAACAGACC 180 consensus_8415#1 AAGTTACTAGC-GCAGATGC--AACCGCTGGCTCTGCA-AAAAACCCCAATAAACAGACC 168 *** ******* ******** * * ************ *** ***************** consensus_8415#0 ATTTTGGGGCTGGGTGAACATGATGTTCAACCGGGTCGATCGCGCTAGACTGAAGAAGGT 240 consensus_8415#1 ATTTTGGGGCTGGGTGAACATGATGTTCAACCGGGTCGATCGCGCTAGACTGAAGAAGGT 228 ************************************************************ consensus_8415#0 TGGTCCCGACCGACTATATGTGCCGAATGGTTTGCTAAAGAATGGACGCGAAATGCAAAG 300 consensus_8415#1 TGGCCCCGACCGACTT--TGTGCCGAATGGTT-GCTAAAGAATGGA-GCGAAA-GCAAAG 283 *** *********** ************** ************* ****** ****** consensus_8415#0 TTCTGTCGAAGGACTGCCCTGTGTGCATTGTGCATTTTTAACGCACTTCCTGGACTGAGT 360 consensus_8415#1 TT-TGT-GAAGGAC--GCCCGTGTGCAT-GTGCATTTT-AACGCACTTCC-GGAC-GAGT 335 ** *** ******* ** ******** ********* *********** **** **** consensus_8415#0 CCTTGCCTGGTGCTAATGGAAGAACTCGATGGGACCGTGATTCGGGCATTAATGCCACAT 420 consensus_8415#1 CCTTGCC-GGTGCTAATGGAAGAACTCGATGGGACG--GATTCGGGCAT-AATGC-ACAT 390 ******* *************************** *********** ***** **** consensus_8415#0 TTGGGTATCGATCATCTGGGAGCGGATTGAGTCGGCTCAGGANAGTNTGTCCTCCATAAC 480 consensus_8415#1 T-GGGT-TCGATCATCTGGAA--GGATTGAATCGGCTCAGGAAAGTT-GTCCTCCATAAC 445 * **** ************ * ******* *********** *** ************ consensus_8415#0 TGTGTCTACATCGACAATCAAGCTCTGTGCGAAGCTGCGATACGTATGCCAATACGCTGG 540 consensus_8415#1 TGTGTCTACATCGACAATCAAGCTCTGTG-GAAGCTGCGATACGT-TGCCAATACGCTGG 503 ***************************** *************** ************** consensus_8415#0 NGGAGTTGCCAAATTTCCAAGTGTGGCAATGTCACCGATGCCGGATTGCTACAGCTCAAA 600 consensus_8415#1 AGGAGTTGC-AAATTTCCAAGTGTGGCAATGTCACCGATGCCGGATTGCTACAGCTCAAA 562 ******** ************************************************** consensus_8415#0 CAGCTCCCTCAGCTACAACAGGTGACAAACGTTCGATTTGCCTGATGTGAAAAATATACA 660 consensus_8415#1 CAGCTCCCTCAGCTACAACAGGTGA-AAACGTTCGAATTGCCTGATGTGAAAAATATACA 621 ************************* ********** *********************** consensus_8415#0 GGCAAGTGGAAAAAACGCTCAAACCAAGCACTTCCCAACTGCCAATTCGATATGNAGCCA 720 consensus_8415#1 GG-AAGTGGAAAAAACGCTCAAAC-AAGCACTTCCCAACTGCAAATTCGATATGAAGCCA 679 ** ********************* ***************** *********** ***** consensus_8415#0 TAGCCACAAAACGTCGAGCATCTGTCACGTATACTTGGTACCATCCTAGCGCAATCGCCG 780 consensus_8415#1 TAG--AAAAAACGTCGAGATTGT---ACGTAGAATTGGTACCATC-TAGCGCAATCGCCG 733 *** * *********** * * ***** * *********** ************** consensus_8415#0 CCATACAG-GTCAAACTTTAATNAACNCNATNACGCACAAGAGCATGTAGTCGAACCCCA 839 consensus_8415#1 C-ATACAGCGTCTAACTT-AATAAA---AATAGCACAGAG----ATGTGGT--GACCC-- 780 * ****** *** ***** *** ** ** * ** * **** ** **** consensus_8415#0 AGTGCACAACACACAACAACAANCANNACAACANCACACAGGGCNATGTTGACGAACCCG 899 consensus_8415#1 AGTGCAAAAAAAAAAAAAAA---------------------------------------- 800 ****** ** * * ** ** consensus_8415#0 CAAAGCNNCATACCCCATATA 920 consensus_8415#1 --------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||