These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8427#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1128 fasta sequence [TAACGGATTTCCAGCGGTGTAGTTTACTAGCTTTTCACTCCGTGGAGTAGTATTTGAGGCTTACTAAACCCCCTCACCACCGTGGTCCAGGTTTGCAGTACAGTAGCAGCTGTACCAACCGG-GTTTCAAGCAAGTTTTGCAGTCTAGCATCGCACCACTCTCGCACAGCACAATGTCGTCCACGAACGGAGCACGAAGCGGATCGCTCTACATCCTGCAAGCGTTGGTGCTGCTCTGGTCGATAGCGATGGTATCGGCCAACAAGCGATATTGTGGAGCGG-A-CTGGTAAAGGTACTGTCCTTCCTGTGTGATGAATTCCCCGATCTGCATACGACGAGCAAGCGGTCCGCTGACAACTTCGCCAAGCCGTCGGATATGGCCACGGAGGACTGGATGAACGTGGAAGACAACACGCAGCAGATACTCGATCAGCAGCTGCAGTCGGTCGGCATGCCGGATGATCGTG-CCACGGTACCCGCCTGGATGAACATGGTCTACCCATCGAACTACATGTACCGTCATGGGGCAGGACACAACGAGCTGATACCGGCCCGCTTCCGCAAGAATCGTGGTGGCATCGTGGAGGAGTGTTGTTTGCGGCCGTGCGGTATGAACCAGTTGCTGCAGTACTGCAAGAAGGTTAGCGCGTACTAAAAGGTCAACGGGAACGAGTAGACGTCGGGCAAGTGAAGCTTATACGCTCATAAGTGTGTTTGGCATATAATACTCTACTCATATTGAATGGTTTGTGTCACACGAGAAGCAGGGAAAATAGGAGGGAACAAGTCCCTGACGTAGGTCACTGATGCAGGGAATGGTTTCGTACAAAGCCGTATTATAAAGCACAACATTGAACAAAGTTGATAAACAACTCACCTTAAAATACCTTTAGCTTAGGCTCACAAGCTCTTGCTGTTATTAGAAACGCTTTCTATATTTTAACGATGTTGCTAAAAACTTGTGCGGTTGCGGCAAGCAGTCCAGACCAGATGATGTAGGGAACCACGTATTTAAGTACCTTAAATGGCTGCCAAGCATAGCTACAGATATTATTGGACTATTTGGTAAAGCATGAAAAAT-AAAAAAAAACTATCGATTATTGGCCATTTGCAAATAGCGCATGAAAAT] [+] EMBL CNS08S62 [TAACGGATTTCCAGCGGTGTAGTTTACTAGCTTTTCACTCCGTGGAGTAGTATTTGAGGCTTACTAAACCCCCTCACCACCGTGGTCCAGGTTTGCAGTACAGTAGCAGCTGTACCAACCGG GTTTCAAGCAAGTTTTGCAGTCTAGCATCGCACCACTCTCGCACAGCACAATGTCGTCCACGAACGGAGCACGAAGCGGATCGCTCTACATCCTGCAAGCGTTGGTGCTGCTCTGGTCGATAGCGATGGTATCGGCCAACAAGCGATATTGTGGAGCGG A CTGGTAAAGGTACTGTCCTTCCTGTGTGATGAATTCCCCGATCTGCATACGACGAGCAAGCGGTCCGCTGACAACTTCGCCAAGCCGTCGGATATGGCCACGGAGGACTGGATGAACGTGGAAGACAACACGCAGCAGATACTCGATCAGCAGCTGCAGTCGGTCGGCATGCCGGATGATCGTG CCACGGTACCCGCCTGGATGAACATGGTCTACCCATCGAACTACATGTACCGTCATGGGGCAGGACACAACGAGCTGATACCGGCCCGCTTCCGCAAGAATCGTGGTGGCATCGTGGAGGAGTGTTGTTTGCGGCCGTGCGGTATGAACCAGTTGCTGCAGTACTGCAAGAAGGTTAGCGCGTACTAAAAGGTCAACGGGAACGAGTAGACGTCGGGCAAGTGAAGCTTATACGCTCATAAGTGTGTTTGGCATATAATACTCTACTCATATTGAATGGTTTGTGTCACACGAGAAGCAGGGAAAATAGGAGGGAACAAGTCCCTGACGTAGGTCACTGATGCAGGGAATGGTTTCGTACAAAGCCGTATTATAAAGCACAACATTGAACAAAGTTGATAAACAACTCACCTTAAAATACCTATAGCTTAGGCTCACAAGCTCTTGCTGTTATTAGAAACGCTTTCTATATTTTAACGATGTTGCTAAA ] [+] EMBL CNS08WB9 [ AACGGATTTCCAGCGGTGTAGTTTACTAGCTTTTCACTCCGTGGAGTAGTATTTGAGGCTTACTAAACCCCCTCACCACCGTGGTCCAGGTTTGCAGTACAGTAGCAGCTGTACCAACCGG GTTTCAAGCAAGTTTTGCAGTCTAGCATCGCACCACTCTCGCACAGCACAATGTCGTCCACGAACGGAGCACGAAGCGGATCGCTCTACATCCTGCAAGCGTTGGTGCTGCTCTGGTCGATAGCGATGGTATCGGCCAACAAGCGATATTGTGGAGCGG A CTGGTAAAGGTACTGTCCTTCCTGTGTGATGAATTCCCCGATCTGCATACGACGAGCAAGCGGTCCGCTGACAACTTCGCCAAGCCGTCGGATATGGCCACGGAGGACTGGATGAACGTGGAAGACAACACGCAGCAGATACTCGATCAGCAGCTGCAGTCGGTCGGCATGCCGGATGATCGTG CCACGGTACCCGCCTGGATGAACATGGTCTACCCATCGAACTACATGTACCGTCATGGGGCAGGACACAACGAGCTGATACCGGCCCGCTTCCGCAAGAATCGTGGTGGCATCGTGGAGGAGTGTTGTTTGCGGCCGTGCGGTATGAACCAGTTGCTGCAGTACTGCAAGAAGGTTAGCGCGTACTAAAAGGTCAACGGGAACGAGTAGACGTCGGGCAAGTGAAGCTTATACGCTCATAAGTGTAAAAAGCATATAATACTCTACTCATATTGAATGGTTTGTGTCACACGAGAAGCAGGGAAAATAGGAGGGAACAAGTCCCTGACGTAGGTCACTGATGCAGGGAATGGTTTCGTACAAAGCCGTATTATAAAGCACAACATTGAACAAAGTTGATAAACAACT ] [+] EMBL BX612229 [ ACCCCCTCACCACCGTGGTCCAGGTTTGCAGTACAGTAGCAGCTGTACCAACCGGAGTTTCAAGCAAGTTTTGCAGTCTAGCATCGCACCACTCTCGCACAGCACAATGTCGTCCACGAACGGAGCACGAAGCGGATCGCTCTACATCCTGCAAGCGTTGGTGCTGCTCTGGTCGATAGCGATGGTATCGGCCAACAAGCGATATTTTGGAGCGG AGCTGGTAAAGGTACTGTCCTTCCTGTGTGATGAATTCCCCGATCTGCATACGACGAGCAAGCGGTCCGCTGACAACTTCGCCAAGCCGTCGGATATGGCCACGGAGGACTGGATGAACGCGGAAGACAACACGCAGCAGATACTCGATCAGCAGCTGCAGTCGGTCGGCATGCCGGATGATCGTG CCACGGTACCCGCCTGGATGAACATGGTCTACCCATCGAACT ATGTACCGTCATGGGGCAGGACACAACGAGCTGATACCGGCCCGCTTCCGCAAGAATCGTGGTGGCATCGTGGAGGAGTGTTGTTTGCGGCCGTGCGGTATGAACCAGTTGCTGCAGTACTGCAAGAAGGTTAGCGCGTACTAAAAGGTCAACGGGAACGGGTAGACGTCGGGCAAGTGAAGCTTATACGCTCATAAGTGTGTTTGGCATATAATACTCTACTCATATTGAATGGTTTGTGTCACACGAGAAGCAAGGAAAATAGGAGGGAACAAGTCCC ] [+] EMBL BX626105 [ CCCTCACCACCGTGGTCCAGGTTTACAGTACAGTAGGAGCTGTACCAACCGG GTTTCAAGCAAGTTTTGCAGTCTAACATCGCACTACTCTCGCACAGCACAATGTCGTCCACAAACGGAGCACGAAGCGTATCGCTCTACATCCTGCAAGCGTTGGTGCTGCTCTGGTCGATAGCGATGGTATCGGCCAACAAGCGATACTGTGGAGCGGAA CTGGTAAAGGTACTGTCCTTCCTGTGTGATGAGTTTCCCGATCTGCATACGACGAGCAAGCGATCCGCTGACAACTTCGCCAAGCCGTCGGATATGGCCACGGAGGACTGGATGAACGCGGAAGACAACACGCAGCAGATACTCGATCAGCAGCTGCAGTCGGTCGGTATGCCGGATGATCGTG CCGCGGTACCCGCCTGGATGAACATGGTCTACCCGACGAACTACATGTACCGTCATGGGGCAGGACACAACGAGCTGATACCCGCCCGCTTCCGCAAGAATCGTGGTGGCATCGTGGAGGAGTGTTGTTTGCGGCCGTGCGGTATGAACCAGTTGCTGCAGTACTGCAAGAAGGTTAGCGCGTACTAAAAGGTCAACGAAAACGGGTAGACGTCGGGCAAGTGAAGCTTATACGCTCATAAGTGTGTTTGGCATAGAATACTCTACTCATATTGAATGGTTTGTGTCGCACGAGAAGCAGGGAAAATAGGANGGAACAAGTCCCTAACGTAGGTTACTGATGTANGGAATGGTTACG ] [+] EMBL BX609954 [ CCCGATCTGCATACGACGAGCAAGCGGTCCGCTGACAACTTCGCCAAGCCGTCGGATATGGCCACGGAGGACTGGATGAACGCGGAAGACAACACGCAGCAGATACTCGATCAGCAGCTGCAGTCGGTCGGCATGCCGGATGATCGTG CCACGGTACCCGCCTGGATGAACATGGTCTACCCATCGAACTACATGTACCGTCATGGGGCAGGACACAACGAGCTGATACCGGCCCGCTTCCGCAAGAATCGTGGTGGCATCGTGG ] [-] EMBL CNS08WBA [ CCAAGCCGTCGGATATGGCCACGGAGGACTGGATGAACGTGGAAGACTTTTTGCAGAAGAAACTCGATCAGCAGCTGCAGTCGGTCGGCATGCCGGATGATCGTGCCCACGGTACCCGCCTGGATGAACATGGTCTACCCATCGAACTACATGTACCGTCATGGGGCAGGACACAACGAGCTGATACCGGCCCGCTTCCGCAAGAATCGTGGTGGCATCGTGGAGGAGTGTTGTTTGCGGCCGTGCGGTATGAACCAGTTGCTGCAGTACTGCAAGAAGGTTAGCGCGTACTAAAAGGTCAACGGGAACGAGTAGACGTCGGGCAAGTGAAGCTTATACGCTCATAAGTGTGTTTGGCATATAATACTCTACTCATATTGAATGGTTTTTTTCACACGAGAAGCAGGGAAAATAGGAGGGAACAAGTCCCTGACGTAGGTCACTGATGCAGGGAATGGTTTCGTACAAAGCCGTATTATAAAGCACAACATTGAACAAAGTTGATAAACCACTCACCTTAAAATACCTTTAGCTTAGGCTCACAAGCTCTTGCTGTTATTAGAAACGCTTTCTATATTTTAACGATGTTGCTAAAAACTTGTGCGGTTGCGGCAAGCAGTCCAGACCAGATGATGTAGGGAACCACGTATTTAAGTACCTTAAATGGCTGCCAAGCATAGCTACAGATATTATTGGACTATTTGGTAAAGCATGAAAAAT AAAAAAAAACTATCGATTATTGGCCATTTGCAAATAGCGCATGAAAAT] [+] EMBL BX611912 [ CAGCAGCTGCAGTCGGTCGGCATGCCCTTTGATCGTG CCACGGTACCCGCCTGGATGAACATGGTCTACCCATCGAACTACATGTACCGTCATGGGGCAGGACACAACGAGCTGATACCGGCCCGCTTCCGCAAGAATCGTGGTGGCATCGTGGAGGAGTGTTGTTTGCGGCCGTGCGGTATGAACCAGCTGCTGCAGTACTGCAAGAAGGTTAGCGCGTACTAAAAGGTCAACGGGAACGGGTAGACGTCGGGCAAGTGAAGCTTATACGCTCATAAGTGTGTTTGGCATATAATACTCTACTCATATTGAATGGTTTGTGTCACACGAGAAGCAGGG AAATAGGAGGGAACAAGTCCCTGACGTAGGTCACTGATGCAGGGAATGGTTTCGTACAAAGCCGTATTATAAAGCACAACATTGAACAAAGTTGATAAACAACTCACCTTAAAATACCTTTAGCTTAGGCTCACAAGCTCTTGCTGTTATTAGAAACGCTTTCTATATTTTAACGATGTTGCTAAACACTTGTGCGGTTGCGGCAAGCAGTCCAGACCAGATGATGTAGGGAACCACGTATTTAAGTACCTTAAATGGCTGCCAAGCATAGCTACAGATATTATTGGACTATTTGGTAAAGCATGAAAAATAAAAAAAAAACTATCGATTATTGGCCATTTGCAAATA ] [-] EMBL CNS08S63 [ TGGTTTCGTACAAAGCCGTATTATAAAGGACAACATTGAACAAAGTTGATAAACAACTCACCTTAAAATACCTTTAGCTTAAGCTCACAAGCTCTTGCTGTTATTAGAAACGCTTTCTATATTTTAACGATGTTGCTAAAAACTTGTGCGGTTGCGGCAAGCAGTCCAGACCAGATGATGTAGGGAACCACGTATTTAAGTACCTTAAATGGCTGCCAAGCATAGCTACAGATATTATTGGACTATTTGGTAAAGCATGAAAAAT AAAAAAAAACTATCGATTATTGGCCA ] consensusID : consensus_8427#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 711 fasta sequence [GACCCACGCGTCCGGTGTAGTTTACTAGCTTTTCACTCCGTGGAGTAGTGTTTGAGGCTTACTAAACCCTCTCACCACCGTGGTCCAGGTTTGCAGTACAGTAGCAGCTGTACCAACCGGGTTTCAAGCAAGTTTTGCAGTCTAGCATCGCACCACTCTCGCACAGCACAATGTCGTCCACGAACG-GAGCACGAAGCGGATC-GCTCTACATCCTGCAAGCGTTGGTGCTGCTCTGGTCGATAGCGATGGTATCGGCCAA-CAAGCGATATTGT-GGA-GCGGA-GCTGGTAAAGGTACTGTCCTT-CCTGTGTGATGAATTCCCCGATCTGCATACGACGAGCAAGCGGTCCGCTGACAACTTCGCCAA-GCCGTC-GG-ATATGGCCACGGAGGACTGGATGAACGCGGAA-GACAAC-ACGCA-GCAGATACTCGATCAGCA-GCTGCA--GTC-GGTC-GGCATGCCGGATGATCGTGCCACGGTACCCGCCTGGATGAACAT-GGTC-T-ACCC-ATC-GAACTAC-A-TGTACCGT-CATGGGGC-AG-GACAACGAGCTGATACCGGCCCGCTTCCGCAAGAATCGTGGTGGCATCGTGGAGGAGTGTTGTTTGCGGCCGTGCGGTATGAACCAGTTGCTGCAGTACTGCAAGAAGGTTAGCGCGTACTAAAAGGTCAACGGGAACGGGTAGACGTCGGGCAAGTGAAGCTTATACGCTCATAAGTGTGTT] [+] EMBL BM647099 [GACCCACGCGTCCGGTGTAGTTTACTAGCTTTTCACTCCGTGGAGTAGTGTTTGAGGCTTACTAAACCCTCTCACCACCGTGGTCCAGGTTTGCAGTACAGTAGCAGCTGTACCAACCGGGTTTCAAGCAAGTTTTGCAGTCTAGCATCGCACCACTCTCGCACAGCACAATGTCGTCCACGAACG GAGCACGAAGCGGATC GCTCTACATCCTGCAAGCGTTGGTGCTGCTCTGGTCGATAGCGATGGTATCGGCCAA CAAGCGATATTGT GGA GCGGA GCTGGTAAAGGTACTGTCCTT CCTGTGTGATGAATTCCCCGATCTGCATACGACGAGCAAGCGGTCCGCTGACAACTTCGCCAA GCCGTC GG ATATGGCCACGGAGGACTGGATGAACGCGGAA GACAAC ACGCA GCAGATACTCGATCAGCA GCTGCA GTC GGTC GGCATGCCGGATGATCGTGCCACGGTACCCGCCTGGATGAACAT GGTC T ACCC ATC GAACTAC A TGTACCGT CATGGGGC AG GACAACGAGCTGATACCGGCCCGCTTCCGCAAGAATCGTGGTGGCATCGTGGAGGAGTGTTGTTTGCGGCCGTGCGGTATGAACCAGTTGCTGCAGTACTGCAAGAAGGTTAGCGCGTACTAAAAGGTCAACGGGAACGGGTAGACGTCGGGCAAGTGAAGCTTATACGCTCATAAGTGTGTT] [+] EMBL AL695108 [ ccnaggttaTGTAGTTTACTAGCTTTTCACTCCGTGGAGTAGTGTTTGAGGCTTACTAAACCCTCTCACCACCGTGGTCCAGGTTTGCAGTACAGTAGCAGCTGTACCAACCGGGTTTCAAGCAAGTTTTGCAGTCTAGCATCGCACCACTCTCGCACAG ACAATGTCGTCCACGAACGNGAGCACGAAGCGGATCTGCTCTACATCCTGCAAGCGTTGGTGCTGCTCTGGTCGATAGCGATGGTATCGGCCAANCAAGCGATATTGTAGGACGCGGACGCTGGTAAAGGTACTGTCCTTACCTGTGTGATGAATTCCCCGATCTGCATACGACGAGCAAGCGGTCCGCTGACAACTTCGCCAAGGCCGTCAGGAATATGGNCACGGAGGACTGGATGAACGCGGAAGGACAACGACGCAGGCAGATACTCGATCAGNAGGCTGCAAGGTCGGGTCGGGCATGCCGGATGATCGTGCCAAGGTAACCGTCTGGATGAACATAGGTCATAACCCAATCGGAACTACGATTGTACCGTNCATGGGGCGAGTGACAcaacngag ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8427#0 TAACGGATTTCCAGCGGTGTAGTTTACTAGCTTTTCACTCCGTGGAGTAGTATTTGAGGC 60 consensus_8427#1 -GACCCACGCGTC-CGGTGTAGTTTACTAGCTTTTCACTCCGTGGAGTAGTGTTTGAGGC 58 ** * ************************************* ******** consensus_8427#0 TTACTAAACCCCCTCACCACCGTGGTCCAGGTTTGCAGTACAGTAGCAGCTGTACCAACC 120 consensus_8427#1 TTACTAAACCCTCTCACCACCGTGGTCCAGGTTTGCAGTACAGTAGCAGCTGTACCAACC 118 *********** ************************************************ consensus_8427#0 GGGTTTCAAGCAAGTTTTGCAGTCTAGCATCGCACCACTCTCGCACAGCACAATGTCGTC 180 consensus_8427#1 GGGTTTCAAGCAAGTTTTGCAGTCTAGCATCGCACCACTCTCGCACAGCACAATGTCGTC 178 ************************************************************ consensus_8427#0 CACGAACGGAGCACGAAGCGGATCGCTCTACATCCTGCAAGCGTTGGTGCTGCTCTGGTC 240 consensus_8427#1 CACGAACGGAGCACGAAGCGGATCGCTCTACATCCTGCAAGCGTTGGTGCTGCTCTGGTC 238 ************************************************************ consensus_8427#0 GATAGCGATGGTATCGGCCAACAAGCGATATTGTGGAGCGGA-CTGGTAAAGGTACTGTC 299 consensus_8427#1 GATAGCGATGGTATCGGCCAACAAGCGATATTGTGGAGCGGAGCTGGTAAAGGTACTGTC 298 ****************************************** ***************** consensus_8427#0 CTTCCTGTGTGATGAATTCCCCGATCTGCATACGACGAGCAAGCGGTCCGCTGACAACTT 359 consensus_8427#1 CTTCCTGTGTGATGAATTCCCCGATCTGCATACGACGAGCAAGCGGTCCGCTGACAACTT 358 ************************************************************ consensus_8427#0 CGCCAAGCCGTCGGATATGGCCACGGAGGACTGGATGAACGTGGAAGACAACACGCAGCA 419 consensus_8427#1 CGCCAAGCCGTCGGATATGGCCACGGAGGACTGGATGAACGCGGAAGACAACACGCAGCA 418 ***************************************** ****************** consensus_8427#0 GATACTCGATCAGCAGCTGCAGTCGGTCGGCATGCCGGATGATCGTGCCACGGTACCCGC 479 consensus_8427#1 GATACTCGATCAGCAGCTGCAGTCGGTCGGCATGCCGGATGATCGTGCCACGGTACCCGC 478 ************************************************************ consensus_8427#0 CTGGATGAACATGGTCTACCCATCGAACTACATGTACCGTCATGGGGCAGGACACAACGA 539 consensus_8427#1 CTGGATGAACATGGTCTACCCATCGAACTACATGTACCGTCATGGGGCAGGAC--AACGA 536 ***************************************************** ***** consensus_8427#0 GCTGATACCGGCCCGCTTCCGCAAGAATCGTGGTGGCATCGTGGAGGAGTGTTGTTTGCG 599 consensus_8427#1 GCTGATACCGGCCCGCTTCCGCAAGAATCGTGGTGGCATCGTGGAGGAGTGTTGTTTGCG 596 ************************************************************ consensus_8427#0 GCCGTGCGGTATGAACCAGTTGCTGCAGTACTGCAAGAAGGTTAGCGCGTACTAAAAGGT 659 consensus_8427#1 GCCGTGCGGTATGAACCAGTTGCTGCAGTACTGCAAGAAGGTTAGCGCGTACTAAAAGGT 656 ************************************************************ consensus_8427#0 CAACGGGAACGAGTAGACGTCGGGCAAGTGAAGCTTATACGCTCATAAGTGTGTTTGGCA 719 consensus_8427#1 CAACGGGAACGGGTAGACGTCGGGCAAGTGAAGCTTATACGCTCATAAGTGTGTT----- 711 *********** ******************************************* consensus_8427#0 TATAATACTCTACTCATATTGAATGGTTTGTGTCACACGAGAAGCAGGGAAAATAGGAGG 779 consensus_8427#1 ------------------------------------------------------------ consensus_8427#0 GAACAAGTCCCTGACGTAGGTCACTGATGCAGGGAATGGTTTCGTACAAAGCCGTATTAT 839 consensus_8427#1 ------------------------------------------------------------ consensus_8427#0 AAAGCACAACATTGAACAAAGTTGATAAACAACTCACCTTAAAATACCTTTAGCTTAGGC 899 consensus_8427#1 ------------------------------------------------------------ consensus_8427#0 TCACAAGCTCTTGCTGTTATTAGAAACGCTTTCTATATTTTAACGATGTTGCTAAAAACT 959 consensus_8427#1 ------------------------------------------------------------ consensus_8427#0 TGTGCGGTTGCGGCAAGCAGTCCAGACCAGATGATGTAGGGAACCACGTATTTAAGTACC 1019 consensus_8427#1 ------------------------------------------------------------ consensus_8427#0 TTAAATGGCTGCCAAGCATAGCTACAGATATTATTGGACTATTTGGTAAAGCATGAAAAA 1079 consensus_8427#1 ------------------------------------------------------------ consensus_8427#0 TAAAAAAAAACTATCGATTATTGGCCATTTGCAAATAGCGCATGAAAAT 1128 consensus_8427#1 ------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||