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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8433#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1339 fasta sequence
[GACGCTTGGATTTATCAACTTTTATTTGCCTTTTTTCCATCGGATTTTCGCATTTGTTTTACTTAACTGTTTAAAATTTAACTTTAATTCTCACCAATATCGCTGTATTCCCTAGCTCGCCCGCTCTCTTTCTCGCTTTCCCTACTGCTCCGCTTCACATTGCTGCCCGCTTGCCTACCGAGTGTAGTCATAGTAGTAGTTGTTGTAGTAGCAACCTGCCTTACCGATTACAGATAAAAAGGAGGAAGGAAAAAACGAAACGTACCTAAAGCGGGCTTTTGCAAAGTCTATCTGTAACGCAGGTGCATACGTGTGTGATTG-TTTGTGTGTGTGTGTGCAAGTGTTGAGCGTTTCTCTCTAGTCGCTTAGTGCCTTAGTGTCTTGGTACAATCCTCAGCTGTGCTGGCAACTCTTGTGGTACAGTCGTCAACTCGCACGACCTAATAACGTACCCGCCGTGGGTTCAATCCTCATATGGAACGGTTCCCCCCCCCCTCCGCATCACTACGATGCCGGGTAGCTAAATAAGTCTCGAAAGCCTTAAATAGGCCGGGCCTTATGGCGTAGTAGGTGTGTCGTTGCGCAAACAAGAAGAAGAAGAGGAAAATTCCGAATCGATCGTGAAAAATCCTCCATCCCCAGGTC-AAACCTACCCTCCGTTGATATGGCTTACAGGTGGGTGGTGC--GGGGGGGGGGGAGAGGGTGATCTGGAAAGCGCTACACTACACACACGCACC--CACACACACACAAGCGCACT---AAAGGACGGCGTTTACTGTGTTTCTTGAAAAAAGGGAAATCATCATCCTTGTTTGTATGCTATATTGTTGTTTCGAACTTTTACGTTAGTAATTCTATACATATAGAGGGGAAAGGGC-GGGGGGGGGGAGAGAACTTCCAAAGTGGTGGCGTTACGGGAGCAAAAAAACTATTAAAAAAAAAGAACATAAACTTAGCGGAGAGAAGAAGGAGGAAGATGATGAAGAAGAAGAAGAAGAAGAGACAGAAAACTAACCTATATGTACCACGTGTACGCGGCGCGAACATACGTTTGTTGTGTGTTGTGTATGTGTATGCATGTGTTTTGTTTGTTTGTATTTAACGTACTAAATCAATGCAAATCTTACAGCAATAGCAATTTGGATGCATCTTGGCTACATCACACAAACACACACGAACGCATTCACGTTAACAGGTGGCTGCTGGTTGCCTGTGTGCAGGTTCTGCTACTTTCTTCCTCTCCACAGAAAAAAAAGATAAAAAAAAAAACCTAACCCTAGCTTTACTTCTAGTTTTAGTAATTTCCTGCCTTCGCTACTAATTTCTTATGCACACACACCGG]
[-] EMBL BM656767 [GACGCTTGGATTTATCAACTTTTATTTGCCTTTTTTCCATCGGATTTTCGCATTTGTTTTACTTAACTGTTTAAAATTTAACTTTAATTCTCACGAATATCGCTGTATTCCCTAGCTCGCTCGCTCTCTTCCTCGCTTTCCCTACTGCTCCGCTTCACATTGCTGCCCGCTTGCCTACCGAGTGTAGTCATAGTAGTAGTTGTTGTAGTAGCAACCTGCCTTACCGATTACAGATAAAAAGGAGGAAGGAAAAAACGAAACGTACCTAACGCGGGCTTTTGCAAAGTCTTTCTGTAACGCAGGTGCATACGTGTGTGATTG TTTGTGTGTGTGTGTGCAAGTGTTGAGCGTTcgg ]
[+] EMBL BX624144 [ ATTTATCAACTTTTATTTGCCTTTTTTCCATCGGATTTTCGCATTTGTTTTACTTAACTGTTTAAAATTTAACTTTAATTCTCACCAATATCGCTGTATTCCCTAGCTCGCCCGCTCTCTTTCTCGCTTTCCCTACTGCTCCGCTTCACATTGCTGCCCGCTTGCCTACCGAGTGTAGTCATAGTAGTAGTTGTTGTAGTAGCAACCTGCCTTACCGATTACAGATAAAAAGGAGGAAGGAAAAAACGAAACGTACCTAAAGCGGGCTTTTGCAAAGTCTATCTGTAACGCAGGTGCATACGTGTGTGATTG TTTGTGTGTGTGTGTGCAAGTGTTGAGCGTTTCTCTCTAGTCGCTTAGTGCCTTAGTGTCTTGGTACAATCCTCAGCTGTGCTGGCAACTCTTGTGGTACAGTCGTCAACTCGCACGACCTAATAACGTACCCGCCGTGGGTTCAATCCTCATATGGAACGGTTCCCCCCCCCCTCCGCATCACTACGATGCCGGGTAGCTAAATAAGTCTCGAAAGCCTTAAATAGGCCGGGCCTTATGGCGTAGTAGGTGTGTCGTTGCGCCAACAAGAAGAAGAAGAGGAAAATTCCGAATCGATCGTGAAAAATCCTCCATCCCCAGGTCAAAACCTACCCTCCGTTGATATG ]
[+] EMBL AGA281894 [ CTTTAATTCTCACCAATATCGCTGTATTCCCTAGCTCGCCCGCTCTCTTTCTCGCTTTCCCTACTGCTCCGCTTCACATTGCTGCCCGCTTGCCTACCGAGTGTAGTCATAGTAGTAGTTGTTGTAGTAGCAACCTGCCTTACCGATTACAGATAAAAAGGAGGAAGGAAAAAACGAAACGTACCTAAAGCGGGCTTTTGCAAAGTCTATCTGTTACGCAGGTGCATACGTGTGTGATTG TTTGTGTGTGTGTGTGCAAG ]
[-] EMBL BX616957 [ ATTGCTGCCCGCTTGCCTACCGAGTGTAGTCATAGTAGTAGTTGTTGTAGTAGCAACCTGCCTTACCGATTACAGATAAAAAGGAGGAAGGAAAAAACGAAACGTACCTAAAGCGGGCTTTTGCAAAGTCTATCTGTAACGCAGGTGCATACGTGTGTGATTG TTTGTGTGTGTGTGTGCAAGTGTTGAGCGTTTCTCTCTAGTCGCTTAGTGCCTTAGTGTCTTGGTACAATCCTCAGCTGTGCTGGCAACTCTTGTGGTACAGTCGTCAACTCGCACGACCTAATAACGTACCCGCCGTGGGTTCAATC CATATGGAACGGTTCCCCCCCCCCTCCGCATCACTACGATGCCGGGTAGCTAAATAAGTCTCGAAAGCCTTAAATAGGCCGGGCCTTATGGCGTAGTAGGTGTGTCGTTGCGCAAACAAGAAGAAGAAGAGGAAAATTCCGAA ]
[-] EMBL BX619241 [ CCGATTACAGAT AAAAGGAGGNNGGGAAAAACGAAACGTACCT AAGCGGGCTTTGGC GAGTCTATCTGTNACGCAGGGGCATACGTGTGTGATTGTTTTGTGTGTGTGTGTGCAAGTGTTGAGCGTNTCTCTNTAGTCGCTTAGTGNNTTAGTGTCTTGGTACGATCCTCAGCTGTGCTGGCNACTCTTGTGGTACAGTCGTCNACTCGCACGACNTNATNACGTACCCGCCGTGGGTTCAATCCTCATATGGAACGGNTCCCCCCCCCCTCCGCATCACTACGATGCCGGGTAGCTAAATAAGTCTCGAAAGCCTTAAATAGGCCGGGCCTTATGGCGTAGTAGGTGTGTCGTTGCGCAAACAAGAAGAAGAAGAGGAAAATTCCGAATCGATCGTGAAAAATCCTCCATCCCCAGGTC AAACCTACCCTCCGTTGATATGGCTTACAGGTGGGTGGTGC GGGGGGGGGGGAGAGGGTGATCTGGAAAGCGCTACACTACACACACGCACCCACACACACACACAAGCGCACT AAAGGACGGCGTTTACTGTGTTTCTTGAAAAAAGGGAAATCATCATCCTTGTT ]
[-] EMBL BM655012 [ AAAGCCTTAAATAGGCCGGGCCTTATGGCGTAGTAGGTGTGTCGTTGCGCAAACAAGAAGAAGAAGAGGAAAATTCCGAATCGATCGTGAAAAATCCCCCAACCCCAGGTC AAACCTACCCTCCGTTGATATGGCTTACAGGTGGGAGGTGCGGGGGGGGGGGGGGGAGGGTGATCTGGAAAGCGCTACACTACACACGCGCACC CACACACACACAAGCGCACTAAAAAAGGACGGTGTTTACTGTGTTTCTTGAAGAAAGGGAAATCATCATCCTTGTTTGTATGCTATATTGTTGTTTCGAACTTTTACGTTAGTAATTCTATACATATAGAGGGGAAAGGGCGGGGGGGGGGGAGAGAACTTCCAAAGTGGTGGCGTTACGGGAGCAAAAAAACTATTAAAAAAAAAGAACATAAACTTAGCGG ]
[-] EMBL AGA280198 [ AAAAATCCTCCATCCGCAGGTC AAACCTACCCTCCGTTGATATGGCTTACAGGTGGGTGGTGC GGGGGGGGGGGAGAGGGTGATCTGGAAAGCGCTACACTACACACACGCACCCACACACACACACAAGCGCACT AAAGGACGGCGTTTACTGTGTTTCTTGAAAAAAGGGAAATCATCATCCTTGTTTGTATGCTATATTGTTGTTTCGAACTTTTACGTTAGTAATTCTATACATATAGAGGGGAAAGGGC GGGGGGGGAGAGAACTTCCAAAGTGGTGGCGTTACGGGAGCAAAAAAAa ]
[-] EMBL BX614336 [ TCCTCCATCCCCAGGTC AAACTTACCCTCCGTTGATATGGCTTACAGGTGGGTGTTGC GGGGGGGGGGGAGAGGGTGATCTGGAAAGCGCTACACTACACACACGCAC ]
[-] EMBL BM636786 [ AGGACGGCGTTTACTGTGTTTCTTGAAGAAAGGGAACTCATCATCCTTGTTTGTATGCTATATTGTTGTTTCGAACTTTTACGTTAGTAATTCTATACATATAGAGGGGAAAGGGC GGGGGGGGGGAGGGAATTTCCAAAGTGGTAGCGTTACGGGAGCAAAAAAACTATT TAAAAAAAGAACATAAACTTAGGGAAGAGAAGAAGGAGGAAGATGATGAAGAAGAAGAAGAAGAAGAGACAGAAAACTAACCTATATGTACCACGTGTACGCGGCGCGAACATACGTTTGTTGTGTGTTGTGTATGTGTATGCATGTGTTTTGTTTGTTTGTATTTAACGTACTAAATCAATGCAAATCTTACAGCAATAGCAATTTGGATGCATCTTGGCTACATCACACAAACACACACGAACGCATTCACGTTAACAGGTGGCTGCTGGTTGCCTGTGTGCAGGTTCTGCTACTTTCTTCCTCTCCACAGAAAAAAAAGATAAAAAAAAAAACCTAACCCTAGCTTTACTTCTAGTTTTAGTAATTTCCTGCCTTCGCTACTAATTTCTTATGCACACACACCGG]
consensusID : consensus_8433#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 185 fasta sequence
[CGNTTTCCCTANTGCTCCGCTTCACATTGCTNCCCGCTTGCCTACCGAGTGTAGTCATAGTAGTAGTTGTTGTAGTAGCAACCTGCCTTNCCGATTANGAATAAAAAGGAGCAAGGAAAAAACGAAACGTACCTAACGCGGGCTTTTGCAAAGTNTTTTTGTTANGCAGGTGCATACGTGTGTGA]
[-] EMBL BX620721 [CGNTTTCCCTANTGCTCCGCTTCACATTGCTNCCCGCTTGCCTACCGAGTGTAGTCATAGTAGTAGTTGTTGTAGTAGCAACCTGCCTTNCCGATTANGAATAAAAAGGAGCAAGGAAAAAACGAAACGTACCTAACGCGGGCTTTTGCAAAGTNTTTTTGTTANGCAGGTGCATACGTGTGTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8433#0 GACGCTTGGATTTATCAACTTTTATTTGCCTTTTTTCCATCGGATTTTCGCATTTGTTTT 60
consensus_8433#1 ------------------------------------------------------------
consensus_8433#0 ACTTAACTGTTTAAAATTTAACTTTAATTCTCACCAATATCGCTGTATTCCCTAGCTCGC 120
consensus_8433#1 ------------------------------------------------------------
consensus_8433#0 CCGCTCTCTTTCTCGCTTTCCCTACTGCTCCGCTTCACATTGCTGCCCGCTTGCCTACCG 180
consensus_8433#1 -------------CGNTTTCCCTANTGCTCCGCTTCACATTGCTNCCCGCTTGCCTACCG 47
** ******** ******************* ***************
consensus_8433#0 AGTGTAGTCATAGTAGTAGTTGTTGTAGTAGCAACCTGCCTTACCGATTACAGATAAAAA 240
consensus_8433#1 AGTGTAGTCATAGTAGTAGTTGTTGTAGTAGCAACCTGCCTTNCCGATTANGAATAAAAA 107
****************************************** ******* *******
consensus_8433#0 GGAGGAAGGAAAAAACGAAACGTACCTAAAGCGGGCTTTTGCAAAGTCTATCTGTAACGC 300
consensus_8433#1 GGAGCAAGGAAAAAACGAAACGTACCTAACGCGGGCTTTTGCAAAGTNTTTTTGTTANGC 167
**** ************************ ***************** * * *** * **
consensus_8433#0 AGGTGCATACGTGTGTGATTGTTTGTGTGTGTGTGTGCAAGTGTTGAGCGTTTCTCTCTA 360
consensus_8433#1 AGGTGCATACGTGTGTGA------------------------------------------ 185
******************
consensus_8433#0 GTCGCTTAGTGCCTTAGTGTCTTGGTACAATCCTCAGCTGTGCTGGCAACTCTTGTGGTA 420
consensus_8433#1 ------------------------------------------------------------
consensus_8433#0 CAGTCGTCAACTCGCACGACCTAATAACGTACCCGCCGTGGGTTCAATCCTCATATGGAA 480
consensus_8433#1 ------------------------------------------------------------
consensus_8433#0 CGGTTCCCCCCCCCCTCCGCATCACTACGATGCCGGGTAGCTAAATAAGTCTCGAAAGCC 540
consensus_8433#1 ------------------------------------------------------------
consensus_8433#0 TTAAATAGGCCGGGCCTTATGGCGTAGTAGGTGTGTCGTTGCGCAAACAAGAAGAAGAAG 600
consensus_8433#1 ------------------------------------------------------------
consensus_8433#0 AGGAAAATTCCGAATCGATCGTGAAAAATCCTCCATCCCCAGGTCAAACCTACCCTCCGT 660
consensus_8433#1 ------------------------------------------------------------
consensus_8433#0 TGATATGGCTTACAGGTGGGTGGTGCGGGGGGGGGGGAGAGGGTGATCTGGAAAGCGCTA 720
consensus_8433#1 ------------------------------------------------------------
consensus_8433#0 CACTACACACACGCACCCACACACACACAAGCGCACTAAAGGACGGCGTTTACTGTGTTT 780
consensus_8433#1 ------------------------------------------------------------
consensus_8433#0 CTTGAAAAAAGGGAAATCATCATCCTTGTTTGTATGCTATATTGTTGTTTCGAACTTTTA 840
consensus_8433#1 ------------------------------------------------------------
consensus_8433#0 CGTTAGTAATTCTATACATATAGAGGGGAAAGGGCGGGGGGGGGGAGAGAACTTCCAAAG 900
consensus_8433#1 ------------------------------------------------------------
consensus_8433#0 TGGTGGCGTTACGGGAGCAAAAAAACTATTAAAAAAAAAGAACATAAACTTAGCGGAGAG 960
consensus_8433#1 ------------------------------------------------------------
consensus_8433#0 AAGAAGGAGGAAGATGATGAAGAAGAAGAAGAAGAAGAGACAGAAAACTAACCTATATGT 1020
consensus_8433#1 ------------------------------------------------------------
consensus_8433#0 ACCACGTGTACGCGGCGCGAACATACGTTTGTTGTGTGTTGTGTATGTGTATGCATGTGT 1080
consensus_8433#1 ------------------------------------------------------------
consensus_8433#0 TTTGTTTGTTTGTATTTAACGTACTAAATCAATGCAAATCTTACAGCAATAGCAATTTGG 1140
consensus_8433#1 ------------------------------------------------------------
consensus_8433#0 ATGCATCTTGGCTACATCACACAAACACACACGAACGCATTCACGTTAACAGGTGGCTGC 1200
consensus_8433#1 ------------------------------------------------------------
consensus_8433#0 TGGTTGCCTGTGTGCAGGTTCTGCTACTTTCTTCCTCTCCACAGAAAAAAAAGATAAAAA 1260
consensus_8433#1 ------------------------------------------------------------
consensus_8433#0 AAAAAACCTAACCCTAGCTTTACTTCTAGTTTTAGTAATTTCCTGCCTTCGCTACTAATT 1320
consensus_8433#1 ------------------------------------------------------------
consensus_8433#0 TCTTATGCACACACACCGG 1339
consensus_8433#1 -------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||