These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8437#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1048 fasta sequence [CTACTGGATCACAAATTTGTTATCATCAATTTCGGCCGGGGATGCTGCGTGCGATTAGAAGCAACTAACTAAACAAATAATCTGCCAAAGCTG-AAATCATTCCAACGCGCAACTAACATACTCGCGACAATCTCCCTCTGAAAGTGGAAGTGTGTGAACGTGTGTAAATAGCTCCAGAAAGCGCGAAAGTATGTCCGCCGATCAAA-GTGCAA-ACG-T-TGAACTGATTAAG-AAGCACATTGGCGAGTATCCCGATTTCCCGAAGAAAGGAATACTTTTCAAGGACATATTTACCGCCCTTCGGCATGGTGAGGTTTGCAAGGCAATCAAAAGCGTGCTCGTGTCGTACGTTCGGGAAAGCTGTCCGGACGTGCAGGTGATCGTTGGGCTGGAGGCACGTGGCTTTCTGTTTAGCTTGCTGATTGCGGCGGAACTGGGCATCGCCTCGGTGCCGATACGGAAGAAGGGTAAACTGCCCGGATCCT-GCGCCCAGCAGGAGTACGTGCTGGAGTATGGAACTGATGTGTTTGAAATACAGCAAGGAAGCATTACCTCCGGGCAGAAGGTGCTGATAATAGACGATCTGTTGGCCACCGGCGGCACGATGGATGCAGCCAACAAGCTCGTCCAGCAGCTCGGCGGAGTGGTGGAGCGAAACGTAGTGATCATAGAGCTGACGGAGCTAGGCGGCAGGAAGAAGCTTGAAGCTTCCGGCTCAAACGTACATTCCTTTATACAGTACCACGATGTAGAATGAGGCGGTGGTGGTAGTTAACATTTGCCAATTGCATGCTAATTATTAGCAACCGACAGCAACATTGCAAAAGACATCCTATACAGGCTAAGCTAGCGAGCTGGTGCAGTTCGTATTTTGTTTTGTTATTTGCTTTACTTCCGGCTCAAATGATACGATCGACTCGTTTTCGATTTAAAACTCTGCACACCGTTAGCGGTTAAAATCTCAGGTCAATAGCAATAGGCCGGTAGCCATACGTTAGTGAAATATAGATCGCAAGCTCAAACAAATAAAGGCGACACCTTACCAAAAAAA] [+] EMBL CNS08TN8 [CTACTGGATCACAAATTTGTTATCATCAATTTCGGCCGGGGATGCTGCGTGCGATTAGAAGCAACTAACTAAACAAATAATCTGCCAAAGCTG AAATCATTCCAACGCGCAACTAACATACTCGCGACAATCTCCCTCTGAAAGTGGAAGTGTGTGAACGTGTGTAAATAGCTCCAGAAAGCGCGAAAGTATGTCCGCCGATCAAA GTGCAA ACGTT TGAACTGATTAAG AAGCACATTGGCGAGTATCCCGATTTCCCGAAGAAAGGAATACTTTTCAAGGACATATTTACCGCCCTTCGGCATGGTGAGGTTTGCAAGGCAATCAAAAGCGTGCTCGTATCGTACGTTCGGGAAAGCTGTCCGGACGTGCAGGTGATCGTTGGGCTGGAGGCACGTGGCTTTCTGTTTAGCTTGCTGATTGCGGCGGAACTGGGCATCGCCTCGGTGCCGATACGGAAGAAGGGTAAACTGCCCGGATCCT GCGCCCAGCAGGAGTACGTGCTGGAGTATGGAACTGATGTGTTTGAAATACAGCAAGGAAGCATTACCTCCGGGCAGAAGGTGCTGATAATAGACGATCTTTTGGCCACCGGCGGCACGATGGATGCAGCCAACAAGCTCGTCCAGCAGCTCGGCGGAGTGGTGGAGCGAAACGTA TAATCATAGAGCTGACGGAGCTAGGCGGCAGGAAGAAGCTTGAAGCTTCCGGCTCAAACGTACATTCCTTTATACAGTACCACGATGTAGAATGAGGCGGTGGTGGTAGTTAACATTTGCCAATTGCATGCTAATTATTAGCAACCGACAGCAACATTGCAAAAGACATCCTATACAGGCTAAGCTAGCGAGCTGGTGCAGTTCGTATTTTGTTTTGTTATTTGCTTTACTTCCGGCTCAAATGATACGATCGACTCGTTTTCGATTTAAAACTCTG ] [+] EMBL CNS08VDD [ AATTTTGTTATCATCAATTTCGGCCGGGGATGCTGCGTGCGATTAGAAGCAACTAACTAAACAAATAATCTGCCAAAGCTGTAAATCATTCCAACGCGCAACTAACATACTCGCGACAATCTCCCTCTGAAAGTGGAAGTGTGTGAACGTGTGTAAATAGCTCCAGAAAGCGCGAAAGTATGTCCGCCGATCAAAGGTGCAACACG TGTGAACTGATTAAGCAAGCACAT ] [+] EMBL BM582127 [ ccgCATCAATTTCGGCCGGGGATGCTGCGTGCGATTAGAAGCAACTAACTAAACAAATAATCTGCCAAAGCTG AAATCATTCCTACCCGCAACGAACATACTCGCGACAATCTCCCTCTGGTAGTTGAAGTGTGTGAACGTGTGTAAATAGCTCCAGAAAGCGCGAAAGTATGTCCGCCGATCAAA GTGCAA ACG T TGAACTGATCAAG AAGCACATTGGCGAGTATCCAGATTTCCCGAAGAAAGGGATACTTTTCAAGGACATATTTACCGCCCTTCGGCATGGTGAGGTTTGCAAAGCAATCAAAAGTGTGCTCGTGTCGTACGTTAGGGAAAGCTGTCCGGACGTGCAGGTGATCGTTGGGCTGGAGGCACGTGGCTTTCTGTTTAGCTTGCTGATTGCGGCGGAACTGGGCATCGCCTCGGTGCCGATACGGAAGAAGGGTAAACTGCCCGGATCCT GCGCCCAGCAGGAGTACGTGCTGGAGTATGGAACTGATGTGTTTGAAATACAGCAAGGAAGCATTACCTCCGGGCAGAAGGTGCTGATAATAGACGATCTGTTGGCCACCGGCGGCACGATGGATGCAGCCAACAAGCTCGTCCAGCAGCTCGGCGGAGTGGTGGAGCGAAACG ] [+] EMBL BX606265 [ CATCAATTTCGGCCGGGGATGCTGCGTGCGATTAGAAGCAACTAACTAAACAAATAATCTGCCAAAGCTG AAATCATTCCAACGCGCAACGAACATACTCGCGACAATCTCCCTCTGGAAGTGGAAGTGTGTGAACGTGTGTAAATAGCTCCAGAAAGCGCGAAAGTATGTCCGCCGATCAAA GTGCAA ACG T TGAACTGATTAAG AAGCACATTGGCGAGTATCCCGATTTCCCGAAGAAAGGAATACTTTTCAAGGACATATTTACCGCCCTTCGGCATGGTGAGGTTTGCAAGGCAATCAAAAGTGTGCTCGTGTCGTACGTTCGGGAAAGCTGTCCGGACGTGCAGGTGATCGTTGGGCTGGAGGCACGTGGCTTTCTGTTTAGCTTGCTGATTGCGGCGGAACTGGGCATCGCCTCGGTGCCGATACGGAAGAAGGGTAAACTGCCCGGATCCT GCGCCCAGCAGGAGTACGTACTGGAGTATGGAACTGATGTGTTTGAAATACAGCAAGGAAGCATTACCTCCGGGCAGAAGGTGCTGATAATAGACGATCTGTTAGCCACCGGCGGCACGATGGATGCAGCTAACAAGCTCGTCCAGCAGCTCGGCGGAGTGGTGGAGCGAAACGTAGTGATCATAGAGCTGACGGAGCTAGGCGGCAGGAAGAAGCTTGAAGCTTTCGGCTCAAACGTACATTCCTTTATACAGTACCACGATGTAGAATGAGGCGGTGGTGGTAGTTAACATTTGCCAAT ] [+] EMBL BM649458 [ ccGGATGCTGCGTGCGATTAGAAGCAACTAACTAAACAAATAATCTGCCAAAGCTG AAATCATTCCAACGCGCAACGAACATACTCGCGACAATCTCCCTCTGGAAGTGGAAGTGTGTGAACGTGTGTAAATAGCTCCAGAAAGCGCGAAAGTATGTCCGCCGATCAAA GTGCAA ACG T TGAACTGATTAAG AAGCACATTGGCGAGTATCCCGATTTCCCGAAGAAAGGAATACTTTTCAAGGACATATTTACCGCCCTTCGGCATGG GAGGTTTGCAAGGCAATCAAAAGTGTGCTCGTGTCGTACGTTCGGGAAAGCTGTCCGGACGTGCAGGTGATCGTTGGGCTGGAGGCACGTGGCTTTCTGTTTAGCTTGCTGATTGCGGCGGAACTGGGCATCGCCTCGGTGCCGATACGGAAGAAGGGTAAACTGCCCGGATCCT GCGCCCAGCAGGAGTACGTACTGGAGTATGGAACTGATGTGTTTGAAATACAGCAAGGAAGCATTACCTCCGGGCAGAAGGTGCTGATAATAGACGATCTGTTAGCCACCGGCGGCACGATGGATGCAGCTAACAAGCTCGTCCAGCAGCTCGGCGGAGTGGTGGAGCGAAACGTAGTGATCATAGAGCTGACGGAGCTAGGC ] [+] EMBL CNS08LZ8 [ tctTGCGATTAGAAGCAACTAACTAAACAAATAATCTGCCAAAGCTG AAATCATTCCAACGCGCAACTAACATACTCGCGACAATCTCCCTCTGAAAGTGGAAGTGTGTGAACGTGTGTAAATAGCTCCAGAAGGCGCGAAAGTATGTCCGCCGATCAAA GTGCAA ACGTT TGAACTGATTAAG AAGCACATTGGCGAGTATCCCGATTTCCCGAAGAAAGGAATACTTTTCAAGGACATATTTACCGCCCTTCGGCATGGTGAGGTTTGCAAGGCAATCAAAAGCGTGCTCGTATCGTACGTTCGGGAAAGCTGTCCGGACGTGCAGGTGATCGTTGGGCTGGAGGCACGTGGCTTTCTGTTTAGCTTGCTGATTGCGGCGGAACTGGGCATCGCCTCGGTGCCGATACGGAAGAAGGGTAAACTGCCCGGACCCT GCGCCCAGCAGGAGTACGTGCTGGAGTATGGAACTGATGTGTTTGAAATACAGCAAGGAAGCATTACCTCCGGGCAGAAGGTGCTGATAATAGACGATCTGTTGGCCACCGGCGGCACGATGGATGCAGCCAACAAGCTCGTCCAGCAGCTCGGCGGAGTGGTGGAGCGAAACGTAGTATTCATAGAGCTGACGGAGCTAGGCGGCAGGAAGAAGCTTGAAGCTTCCGGCTCAAACGTACATTCCTTTATACAGTACCACGATGTAGAATGAGGCGGTGGTGGTAGTTAACATTTGCCAATTGCATGCTAATTATTAGCAACCGACAGCAACATTGCAAAAGACATCCTATACAGGCTAAGCTAGCGAGCTGGTGCAGTTCGTATTTTGTTTTGTTATTTGCTTTACTTCCGGCTCAAATGATACGATCGACTCGTTTTCGATTTAAAACTCTGCACACCGTTAGCGGTTAAAATCTCAGGTCAATAGCAATAGGCCGGTAGCCATACGTTAGTGAAATATAGATCGCAAGCTCAAACAAATAAAGGCGACACCT ] [-] EMBL CNS08LZ9 [ ATTAGAAGCAACTAACTAAACAAATAATCTGCCAAAGCTG AAATCATTCCAACGCGCAACTAACATACTCGCGACAATCTCCCTCTGAAAGTGGAAGTGTGTGAACGTGTGTAAATAGCTCCAGAAGGCGCGAAAGTATGTCCGCCGATCAAA GTGCAA ACG T TGAACTGATTAAG AAGCACATTGGCGAGTATCCCGATTTCCCGAAGAAAGGAATACTTTTCAAGGACATATTTACCG CCTTCGGCATGGTGAGGTTTGCAAGGCAATCAAAAGCGTGCTCGTATCGTACGTTCGGGAAAGCTGTCCGGACGTGCAGGTGATCGTTGGGCTGGAGGCACGTGGCTTTCTGTTTAGCTTGCTGATTGCGGCGGAACTGGGCATCGCCTCGGTGCCGATACGGAAGAAGGGTAAACTGCCCGGACCCTCGCGCCCAGCAGGAGTACGTGCTGGAGTATGGAACTGATGTGTTTGAAATACAGCAAGGAAGCATTACCTCCGGGCAGAAGGTGCTGATAATAGACGATCTGTTGGCCACCGGCGGCACGATGGATGCAGCCAACAAGCTCGTCCAGCAGCTCGGCGGAGTGGTGGAGCGAAACGTAGTGATCATAGAGCTGACGGAGCTAGGCGGCAGGAAGAAGCTTGAAGCTTCCGGCTCAAACGTACATTCCTTTATACAGTACCACGATGTAGAATGAGGCGGTGGTGGTAGTTAACATTTGCCAATTGCATGCTAATTATTAGCAACCGACAGCAACATTGCAAAAGACATCCTATACAGGCTAAGCTAGCGAGCTGGTGCAGTTCGTATTTTGTTTTGTTATTTGCTTTACTTCCGGCTCAAATGATACGATCGACTCGTTTTCGATTTAAAACTCTGCACACCGTTAGCGGTTAAAATCTCAGGTCAATAGCAATAGGCCGGTAGCCATACGTTAGTGAAATATAGATCGCAAGCTCAAAAAAATAAAc ] [+] EMBL BX626341 [ ATTCCAACGCGCAACGAACATACTCGCGACAATCTCCCTCTGGAAGTGGAAGTGTGTGAACGTGTGTAAATAGCTCCAGAAAGCGCGAAAGTATGTCCGCCGATCAAA GTGCAA ACG T TGAACTGATTAAG AAGCACATTGGCGAGTATCCCGATTTCCCGAAGAAAGGAATACTTTTCAAGGACATATTTACCGCCCTTCGGCATGGTGAGGTTTGCAAGGCAATCAAAAGTGTGCTCGTGTCGTACGTTCGGGAAAGCTGTCCGGACGTGCAGGTGATCGTTGGGCTGGAGGCACGTGGCTTTCTGTTTAGCTTGCTGATTGCGGCGGAACTGGGCATCGCCTCGGTGCCGATACGGAAGAAGGGTAAACTGCCCGGATCCT GCGCCCAGCAGGAGTACGTACTGGAGTATGGAACTGATGTGTTTGAAATACAGCAAGGAAGCATTACCTCCGGGCAGAAGGTGCTGATAATAGACGATCTGTTAGCCACCGGCGGCACGATGGATGCAGCTAACAAGCTCGTCCAGCAGCTCGGCGGAGTGGTGGAGCGAAACGTAGTGATCATAGAGCTGACCGAGCTA GCGGCAGGAAGAAGCTTGAAGCTTCCGGCTCAAACGTACATTCCTTTATACAGTACCACGA ] [-] EMBL CNS08TN9 [ GTGTAAATAGCTCCAGAAAGCGCGAAAGTATGTCCGCCGATCAAA GTGCAA ACG T TGAACTGATTAAG AAGCACATTGGCGAGTATCCCGATTTCCCGAAGAAAGGAATACTTTTCAAGGACATATTTACCG CCTTCGGCATGTTGAGGTTTGCAAGGCAATCAAAAGCGTGCTCGTTTCGTACGTTCGGGAAAGCTGTCCGGACGTGCAGGTGATCGTTGGGCTGAAGGCACGTGGCTTTCTGTTTAGCTTGCTGATTGCGGCGGAACTGGGCATCGCCTCGGTGCCGATACGGAAAAAGGGTAAACTGCCCGGATCCT GCGCCCAGCAGGAGTACGTGCTGGAGTATGGAACTGATGTGTTTGAAATACAGCAAGGAAGCATTACCTCCGGGCAGAAGGTGCTGATAATAGACGATCTGTTGGCCACCGGCGGCACGATGGATGCAGCCAACAAGCTCGTCCAGCAGCTCGGCGGAGTGGTGGAGCGAAACGTAGTGATCATAGAGCTGACGGAGCTAGGCGGCAGGAAGAAGCTTGAAGCTTCCGGCTCAAACGTACATTCCTTTATACAGTACCACGATGTAGAATGAGGCGGTGGTGGTAGTTAACATTTGCCAATTGCATGCTAATTATTAGCAACCGACAGCAACATTGCAAAAGACATCCTATACAGGCTAAGCTAGCGAGCTGGTGCAGTTCGTATTTTGTTTTGTTATTTGCTTTACTTCCGGCTCAAATGATACGATCGACTCGTTTTCGATTTAAAACTCTGCACACCGTTAGCGGTTAAAATCTCAGGTCAATAGCAATAGGCCGGTAGCCATACGTTAGTGAAATATAGATCGCAAGCTCAAACAAATAAAGGCTACACCTTACCAAAAAAA] consensusID : consensus_8437#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 114 fasta sequence [CCNAGTTAATACTTAAACAATATCTGCCAAAGCTGAAATCATTCAACGCGCAGAACATACTCGCGACATCTCCCTCTGGAAGTGGAAGTGTGTGAACGTGTGTAAATAGCTCCA] [+] EMBL AL695165 [CCNAGTTAATACTTAAACAATATCTGCCAAAGCTGAAATCATTCAACGCGCAGAACATACTCGCGACATCTCCCTCTGGAAGTGGAAGTGTGTGAACGTGTGTAAATAGCTCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8437#0 CTACTGGATCACAAATTTGTTATCATCAATTTCGGCCGGGGATGCTGCGTGCGATTAGAA 60 consensus_8437#1 --------------------------------------------------------CCNA 4 * consensus_8437#0 GCAACTAACTAAACAAATAATCTGCCAAAGCTGAAATCATTCCAACGCGCAACTAACATA 120 consensus_8437#1 GTTAATACTTAAACAAT--ATCTGCCAAAGCTGAAATCATTC-AACGCGCAG--AACATA 59 * * ** ******* *********************** ******** ****** consensus_8437#0 CTCGCGACAATCTCCCTCTGAAAGTGGAAGTGTGTGAACGTGTGTAAATAGCTCCAGAAA 180 consensus_8437#1 CTCGCGACA-TCTCCCTCTGGAAGTGGAAGTGTGTGAACGTGTGTAAATAGCTCCA---- 114 ********* ********** *********************************** consensus_8437#0 GCGCGAAAGTATGTCCGCCGATCAAAGTGCAAACGTTGAACTGATTAAGAAGCACATTGG 240 consensus_8437#1 ------------------------------------------------------------ consensus_8437#0 CGAGTATCCCGATTTCCCGAAGAAAGGAATACTTTTCAAGGACATATTTACCGCCCTTCG 300 consensus_8437#1 ------------------------------------------------------------ consensus_8437#0 GCATGGTGAGGTTTGCAAGGCAATCAAAAGCGTGCTCGTGTCGTACGTTCGGGAAAGCTG 360 consensus_8437#1 ------------------------------------------------------------ consensus_8437#0 TCCGGACGTGCAGGTGATCGTTGGGCTGGAGGCACGTGGCTTTCTGTTTAGCTTGCTGAT 420 consensus_8437#1 ------------------------------------------------------------ consensus_8437#0 TGCGGCGGAACTGGGCATCGCCTCGGTGCCGATACGGAAGAAGGGTAAACTGCCCGGATC 480 consensus_8437#1 ------------------------------------------------------------ consensus_8437#0 CTGCGCCCAGCAGGAGTACGTGCTGGAGTATGGAACTGATGTGTTTGAAATACAGCAAGG 540 consensus_8437#1 ------------------------------------------------------------ consensus_8437#0 AAGCATTACCTCCGGGCAGAAGGTGCTGATAATAGACGATCTGTTGGCCACCGGCGGCAC 600 consensus_8437#1 ------------------------------------------------------------ consensus_8437#0 GATGGATGCAGCCAACAAGCTCGTCCAGCAGCTCGGCGGAGTGGTGGAGCGAAACGTAGT 660 consensus_8437#1 ------------------------------------------------------------ consensus_8437#0 GATCATAGAGCTGACGGAGCTAGGCGGCAGGAAGAAGCTTGAAGCTTCCGGCTCAAACGT 720 consensus_8437#1 ------------------------------------------------------------ consensus_8437#0 ACATTCCTTTATACAGTACCACGATGTAGAATGAGGCGGTGGTGGTAGTTAACATTTGCC 780 consensus_8437#1 ------------------------------------------------------------ consensus_8437#0 AATTGCATGCTAATTATTAGCAACCGACAGCAACATTGCAAAAGACATCCTATACAGGCT 840 consensus_8437#1 ------------------------------------------------------------ consensus_8437#0 AAGCTAGCGAGCTGGTGCAGTTCGTATTTTGTTTTGTTATTTGCTTTACTTCCGGCTCAA 900 consensus_8437#1 ------------------------------------------------------------ consensus_8437#0 ATGATACGATCGACTCGTTTTCGATTTAAAACTCTGCACACCGTTAGCGGTTAAAATCTC 960 consensus_8437#1 ------------------------------------------------------------ consensus_8437#0 AGGTCAATAGCAATAGGCCGGTAGCCATACGTTAGTGAAATATAGATCGCAAGCTCAAAC 1020 consensus_8437#1 ------------------------------------------------------------ consensus_8437#0 AAATAAAGGCGACACCTTACCAAAAAAA 1048 consensus_8437#1 ---------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||