These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8445#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1119 fasta sequence [CCAAGAATCGGCCCGAGGCNTCGNTTCGATGGCATGTGCTGGCGCACGNAGAATGTAGGATGTATTATTTTTTATCATGAATTCAAATCCACTCACGCAGAAAGGCATTGCACGCTTAAAAAGGTGGTCACTATTGAAGGTTCTGATCAGTAATCAATTAGCCTTCGA-GATG-ATTGCTTTCTACAGTCTTCTGCTGTTCGCGGCTTGTTCTTCTGTTGCTTCAAGCAGTCCGTTCGAGTCCTTGCGTGGGTAGAGAATGAACTCATCTCGAATCCCTCTACCTGCAATCAATACTACCCGCTGTCTGAGTGGAGAACGGATCCTGTTCAGCTGTACAGAGGGCAAAGGTGTTCAATCCCTCCACGAAACGGTGCGTTACATCTGACCTCTACCCGTGCGATGAGACACAACCGGAGATCACAAGCAGCGGAACCATCGTTGCGTCTGTCTTCACAACCT-AAATGGGATCGTTCCACAGCCGTCCGATTGTGATAAGTACATCGTTTGCAGTGGAGGTTTGNAAACAGTGCAGTCCTGTGGATATCGGGAGAATTTTTCAGTGGAAGAAGTTAGGTTGTGGCGAAGACGTCTCTTGCAGTGAATACTTTAACGGTTACGCCAGAACGCTCGAATCAGTCGCGTGCAACCGGACGAATCACTCCCGCTGGGCGGAACATCCTTACGGAAGTTGGTACGTACAGTTGAC-TGTGGAGCTCAGGAGTCCTGTCCAGCTGTGNCCGAAAAGGTACCAAGTTTTTCCGCCTGGGAAACTTATCCAGGCGGCCTGGTACTTTCCCGGGGGCTGGGTTGGAAAACGGAAACGNAGTTTGCACAAAGTGGCCGGCACCTAAATTAGTGGCCGCCCTTTTGGGCAAAAAAGCGGCACCAATTNCCGTTAGCTCCTTGCGNAGGAAACGGTTACCTTTCAACAGGTTGCGGTCTTTTCACTTGGGGAATATTCCNTNTNGAGNTAGGACAGAAATTTTGGGGCCCCCGNGGATTTATTGAANTCTAACACAGCGGCCAGACAAANGGGGCCACATGCAACGATGANGNTTCCCCGGGGTAAAANCTTCCCAAAAGGGTGNCACCGGGGCAAGTTCGAGAGNGAGNAGTTAG] [+] EMBL BX468623 [CCAAGAATCGGCCCGAGGCNTCGNTTCGATGGCATGTGCTGGCGCACGNAGAATGTAGGATGTATTATTTTTTATCATGAATTCAAATCCACTCACGCAGAAAGGCATTGCACGCTTAAAAAGGTGGTCACTATTGAAGGTTCTGATCAGTAATCAATTAGCCTTCGA GATG ATTGCTTTCTACAGTCTTCTGCTGTTCGCGGCTTGTTCTTCTGTTGCTTCAAGCAGTCCGTTCGAGTCCTTGCGTGGGTAGAGAATGAACTCATCTCGAATCCCTCTACCTGCAATCAATACTACCCGCTGTCTGAGTGGAGAACGGATCCTGTTCAGCTGTACAGAGGGCAAAGGTGTTCAATCCCTCCACGAAACGGTGCGTTACATCTGACCTCTACCCGTGCGATGAGACACAACCGGAGATCACAAGCAGCGGAACCATCGTTGCGTCTGTCTTCACAACCT AAATGGGATCGTTCCACAGCCGTCCGATTGTGATAAGTACATCGTTTGCAGTGGAGGTTTGNAAACAGTGCAGTCCTGTGGATATCGGGAGAATTTTTCAGTGGAAGAAGTTAGGTTGTGGCGAAGACGTCTCTTGCAGTGAATACTTTAACGGTTACGCCAGAACGCTCGAATCAGTCGCGTGCAACCGGACGAATCACTCCCGCTGGGCGGAACATCCTTACGGAAGTTGGTACGTACAGTTGAC TGTGGAGCTCAGGA ] [+] EMBL BX469584 [ cagAATCGGCC ACGAGGTTGTATTGCTTTCTACAGTCTTCTGCTGTTCGCGGCTTG TCTTCTGTTGCTTCAAGCAGTCCGTTCGAGT CTTGCGT GGTAGAGAATGAACTCATCTCGAATCCCTCTACCTGCAATCAATACTA CCGCTGTCTGAGTGGAGAACGGATCCTGTTCAGCTGTACAGAGGGCAAA GTGTTCAATCCCTCCACCAAACGGTGCGTTACATCTGACCTCTACCCGTGCGATGAGACACAACCGGAGATCACAA CAGCGGAACCATCGTTGC TCTGTCTTCACAACCTAAAATGGGATCGTTCCACACCCGTCCGATTGTGATAAGTACATCGTTTGCAGTGGAGGTTTGCAAACAGTGCAGTCCTGTGGATATCGGGAGAATTTTTCA TGGAAGAAGTTAGGTTGTGGCGAAGACGTCTCTTGCAGTGAATACTTTAACGGTTACGCCAGAACGCTCGAATCAGTCGCGTGCAACC GAC AATCACTCCCGCT GGCGGAACATCCTTAC GAAGTTGGTACGTACA TTGACTTGTGGAGCTCAGGAGTCCTGTCCAGCTGTGNCCGAAAAGGTACCAAGTTTTTCCGCCTGGGAAACTTATCCAGGCGGCCTGGTACTTTCCCGGGGGCTGGGTTGGAAAACGGAAACGNAGTTTGCACAAAGTGGCCGGCACCTAAATTAGTGGCCGCCCTTTTGGGCAAAAAAGCGGCACCAATTNCCGTTAGCTCCTTGCGNAGGAAACGGTTACCTTTCAACAGGTTGCGGTCTTTTCACTTGGGGAATATTCCNTNTNGAGNTAGGACAGAAATTTTGGGGCCCCCGNGGATTTATTGAANTCTAACACAGCGGCCAGACAAANGGGGCCACATGCAACGATGANGNTTCCCCGGGGTAAAANCTTCCCAAAAGGGTGNCACCGGGGCAAGTTCGAGAGNGAGNAGTTAG] consensusID : consensus_8445#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 736 fasta sequence [CCGCGGACGCGTGGGTTAGCCTTCGAGATGATTGCTTTCTACAGCCTTCTGCTGTTCGCGGCTTGTTCTTCTGTTGCTTCAAGCAGTCCGTTCGAGTCTTG-CGTGGTAGAGAATGAACTCACCTCGAATCCTTCGACCTGCAATCAGTACTACCGCTGTCTGAGTGGAGAACGGATCCTGTTCAGCTGTACAGAGGGCAAAGTGTTCAATCCCTCCACCAAACGGTGCGTTACATCCGACCTCTACCCGTGCGATGAGACACAACCGGAGATCACAACAGCGGAACCATCGGTGCTCTGTCTTCACAACCCAAATGGGATCGTTCCACACCCGTCCGATTGTGATAAGTACATCGTTTGCAGTGGAGGTTTGCAAACAGTGCAGTCCTGTGGATATCGGGAGAATTTTTCATGGAAGAAGTTAGGTTGTGGCGAAGACGTCTCTTGCAGTGAATACTTCAACGGGTACGCCAGAACGCTCGAATCAGTCGCGTGCAACCGACAATCACTCCCGCTGGCGGAACATCCTTACGAAGTTGGTACGTACATTGATTGTGGCGCTCAGGAGTCTGTCAGCTGCGTCGAAGGTACAATCTTTCGCTGGAACTATCAGCGCTGTCTTCCGGGGCTGGTGGAAACGAACGAGTTGCAGAGTGCCGCACCTAATTGTGGCGCCTTTGGCAAAAGCGCACATCCTTATCTCTGTGAGAAGTACTTCAAGTGCGTCTTCTGGATCT] [+] EMBL BM646130 [CCGCGGACGCGTGGGTTAGCCTTCGAGATGATTGCTTTCTACAGCCTTCTGCTGTTCGCGGCTTGTTCTTCTGTTGCTTCAAGCAGTCCGTTCGAGTCTTG CGTGGTAGAGAATGAACTCACCTCGAATCCTTCGACCTGCAATCAGTACTACCGCTGTCTGAGTGGAGAACGGATCCTGTTCAGCTGTACAGAGGGCAAAGTGTTCAATCCCTCCACCAAACGGTGCGTTACATCCGACCTCTACCCGTGCGATGAGACACAACCGGAGATCACAACAGCGGAACCATCGGTGCTCTGTCTTCACAACCCAAATGGGATCGTTCCACACCCGTCCGATTGTGATAAGTACATCGTTTGCAGTGGAGGTTTGCAAACAGTGCAGTCCTGTGGATATCGGGAGAATTTTTCATGGAAGAAGTTAGGTTGTGGCGAAGACGTCTCTTGCAGTGAATACTTCAACGGGTACGCCAGAACGCTCGAATCAGTCGCGTGCAACCGACAATCACTCCCGCTGGCGGAACATCCTTACGAAGTTGGTACGTACATTGATTGTGGCGCTCAGGAGTCTGTCAGCTGCGTCGAAGGTACAATCTTTCGCTGGAACTATCAGCGCTGTCTTCCGGGGCTGGTGGAAACGAACGAGTTGCAGAGTGC ] [+] EMBL BM646143 [CCGCGGACGCGTGGGTTAGCCTTCGAGATGATTGCTTTCTACAGCCTTCTGCTGTTCGCGGCTTGTTCTTCTGTTGCTTCAAGCAGTCCGTTCGAGTCTTG CGTGGTAGAGAATGAACTCACCTCGAATCCTTCGACCTGCAATCAGTACTACCGCTGTCTGAGTGGAGAACGGATCCTGTTCAGCTGTACAGAGGGCAAAGTGTTCAATCCCTCCACCAAACGGTGCGTTACATCCGACCTCTACCCGTGCGATGAGACACAACCGGAGATCACAACAGCGGAACCATCGGTGCTCTGTCTTCACAACCCAAATGGGATCGTTCCACACCCGTCCGATTGTGATAAGTACATCGTTTGCAGTGGAGGTTTGCAAACAGTGCAGTCCTGTGGATATCGGGAGAATTTTTCATGGAAGAAGTTAGGTTGTGGCGAAGACGTCTCTTGCAGTGAATACTTCAACGGGTACGCCAGAACGCTCGAATCAGTCGCGTGCAACCGACAATCACTCCCGCTGGCGGAACATCCTTACGAAGTTGGTACGTACATTGATTGTGGCGCTCAGGAGTCTGT ] [+] EMBL BM593666 [CCGCGGACGCGTGGGTTAGCCTTCGAGATGATTGCTTTCTACAGCCTTCTGCTGTTCGCGGCTTGTTCTTCTGTTGCTTCAAGCAGTCCGTTCGAGTCTTG CGTGGTAGAGAATGAACTCACCTCGAATCCTTCGACCTGCAATCAGTACTACCGCTGTCTGAGTGGAGAACGGATCCTGTTCAGCTGTACAGAGGGCAAAGTGTTCAATCCCTCCACCAAACGGTGCGTTACATCCGACCTCTACCCGTGCGATGAGACACAACCGGAGATCACAACAGCGGAACCATCGGTGCTCTGTCTTCACAACCCAAATGGGATCGTTCCACACCCGTCCGATTGTGATAAGTACATCGTTTGCAGTGGAGGTTTGCAAACAGTGCAGTCCTGTGGATATCGGGAGAATTTTTCATGGAAGAAGTTAGGTTGTGGCGAAGACGTCTCTTGCAGTGAATACTTCAACGGGTACGCCAGAACGCTCGAATCAGTCGCGTGCAACCGACAATCACTCCCGCTGGCGGAACATCCTTACGAAGTTGGTACGTACATTGATTGTGGCGCTCAGGAGTCTGTCAGCTGCGTCGAAGGTACAATCTTTCGCTGGAACTATCAGCGCTGTCTTCCGGGGCTGGTGGAAACGAACGAGTTGCAGAGTGCCG ] [+] EMBL BM640106 [ ccgGCCTTCGAGATGATTGCTTTCTACAGCCTTCTGCTGTTCGCGGCTTGTTCTTCTGTTGCTTCAAGCAGTCCGTTCGAGTCTTG CGTGGTAGAGAATGAACTCACCTCGAATCCTTCGACCTGCAATCAGTACTACCGCTGTCTGAGTGGAGAACGGATCCTGTTCAGCTGTACAGAGGGCAAAGTGTTCAATCCCTCCACCAAACGGTGCGTTACATCCGACCTCTACCCGTGCGATGAGACACAACCGGAGATCACAACAGCGGAACCATCGGTGCTCTGTCTTCACAACCCAAATGGGATCGTTCCACACCCGTCCGATTGTGATAAGTACATCGTTTGCAGTGGAGGTTTGCAAACAGTGCAGTCCTGTGGATATCGGGAGAATTTTTCATGGAAGAAGTTAGGTTGTGGCGAAGACGTCTCTTGCAGTGAATACTTCAACGGGTACGCCAGAACGCTCGAATCAGTCGCGTGCAACCGACAATCACTCCCGCTGGCGGAACATCCTTACGAAGTTGGTACGTACATTGATTGTGGCGCTCAGGAGTCTGTCAGCTGCGTCGAAGGTACAATCTTTCGCTGGAACTATCAGTGCTGTCTTCCGGGGCTGGTGGAAACGAACGAGTTGCAGAGTGCCGCACCTAATTGTGGCGCCTTTGGC AAAGCGCACATCC ] [+] EMBL BM636724 [ ccggTTGCTTTCTACAGTCTTCTGCTGTTCGCGGCTTGCTCTTCTGTTGCTTCAAGCAGTCCGTCCGAGTCTTG CGTGGTTGAAAATGAACTCACCTCGAATCCCTCGACCTGCAATCAGTACTACCGCTGTCTGAGTGGAGAACGGATCCTGTTCAGCTGTACAGTGGGCAAAGTGTTCAATCCCTCCACCAAACGGTGCGTTACATCCGACCTCTACCCGTGCGATGAGACACAACCGGAGATCACAACAGCGGAACCATCGTTGCTCTGTCTTCACAACCCAAATGGGATCGTTCCACACCCGTCCGATTGTGATAAGTACATCATTTGCAGTGGAGGTTTGCAAACAGTGCAGTCCTGTGGATATCGGGAGAATTTTTCATGGAAGAAGTTAGGTTGTGGCGAAGACGTCTCTTGCAGTGAATACTTCAACGGGTACGCCAGAACGCTCGAATCAGTCGCGTGCAACCGACAATCACTCCCGCTGGCGGAACATCCTTACGAAGTTGGTACGTACATTGACTGTGGCGCTCAAGAGTCTGTCAGCTGtgc ] [+] EMBL AL931562 [ gTTGNTTTCTACAGTCTTCTGCTG TCGCGGCTTGCTCTTCTGTTGCTTCAAGCAGTCCGTCCGAGTCTTGCCGTGGTTGAAAATGAACTCACCTCGAATCCCTCGACCTGCAATCAGTACTACCGCTGTCTGAGTGGAGAACGGATCCTGTTCAGCTGTACAGTGGGCAAAGTGTTCAATCCCTCCACCAAACGGTGCGTTACATCCGACCTCTACCCGTGCGAT ] [+] EMBL BM587778 [ ccgGCTTTCTACAGCCTTCTGCTGTTCGCGGCTTGTTCTTCTGTTGCTTCAAGCAGTCCGTTCGAGTCTTG CGTGGTAGAGAATGAACTCACCTCGAATCCTTCGACCTGCAATCAGTACTACCGCTGTCTGAGTGGAGAACGGATCCTGTTCAGCTGTACAGAGGGCAAAGTGTTCAATCCCTCCACCAAACGGTGCGTTACATCCGACCTCTACCCGTGCGATGAGACACAACCGGAGATCACAACAGCGGAACCATCGGTGCTCTGTCTTCACAACCCAAATGGGATCGTTCCACACCCGTCCGATTGTGATAAGTACATCGTTTGCAGTGGAGGTTTGCAAACAGTGCAGTCCTGTGGATATCGGGAGAATTTTTCATGGAAGAAGTTAGGTTGTGGCGAAGACGTCTCTTGCAGTGAATACTTCAACGGGTACGCCAGAACGCTCGAATCAGTCGCGTGCAACCGACAATCACTCCCGCTGGCGGAACATCCTTACGAAGTTGGTACGTACATTGATTGTGGCGCTCAGGAGTCTGTCAGCTGCGTCGAAGGTACAATCTTTCGCTGGAACTATCAGCGCTGTCTTCCGGGGCTGGTGGAAACGAACGAGTTGCAGAGTGCCGCACCTAATTGTGGCGCCTTTGGCAAAAGCGCACATCCTTA ] [+] EMBL BM578554 [ ccgG CGTGGTAGAGAATGAACTCACCTCGAATCCTTCGACCTGCAATCAGTACTACCGCTGTCTGAGTGGAGAACGGATCCTGTTCAGCTGTACAGAGGGCAAAGTGTTCAATCCCTCCACCAAACGGTGCGTTACATCCGACCTCTACCCGTGCGATGAGACACAACCGGAGATCACAACAGCGGAACCATCGGTGCTCTGTCTTCACAACCCAAATGGGATCGTTCCACACCCGTCCGATTGTGATAAGTACATCGTTTGCAGTGGAGGTTTGCAAACAGTGCAGTCCTGTGGATATCGGGAGAATTTTTCATGGAAGAAGTTAGGTTGTGGCGAAGACGTCTCTTGCAGTGAATACTTCAACGGGTACGCCAGAACGCTCGAATCAGTCGCGTGCAACCGACAATCACTCCCGCTGGCGGAACATCCTTACGAAGTTGGTACGTACATTGATTGTGGCGCTCAGGAGTCTGTCAGCTGCGTCGAAGGTACAATCTTTCGCTGGAACTATCAGCGCTGTCTTCCGGGGCTGGTGGAAACGAACGAGTTGCAGAGTGCCGCACCTAATTGTGGCGCCTTTGGCAAAAGCGCACATCCTTATCTCTGTGAGAAGTACTTCAAGTGCGTCTTCTGGATCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8445#0 CCAAGAATCGGCCCGAGGCNTCGNTTCGATGGCATGTGCTGGCGCACGNAGAATGTAGGA 60 consensus_8445#1 ------------------------------------------------------------ consensus_8445#0 TGTATTATTTTTTATCATGAATTCAAATCCACTCACGCAGAAAGGCATTGCACGCTTAAA 120 consensus_8445#1 ------------------------------------------------------------ consensus_8445#0 AAGGTGGTCACTATTGAAGGTTCTGATCAGTAATCAATTAGCCTTCGAGATGATTGCTTT 180 consensus_8445#1 ----------------------CCGCGGACGCGTGGGTTAGCCTTCGAGATGATTGCTTT 38 * * * * *********************** consensus_8445#0 CTACAGTCTTCTGCTGTTCGCGGCTTGTTCTTCTGTTGCTTCAAGCAGTCCGTTCGAGTC 240 consensus_8445#1 CTACAGCCTTCTGCTGTTCGCGGCTTGTTCTTCTGTTGCTTCAAGCAGTCCGTTCGAGTC 98 ****** ***************************************************** consensus_8445#0 CTTGCGTGGGTAGAGAATGAACTCATCTCGAATCCCTCTACCTGCAATCAATACTACCCG 300 consensus_8445#1 -TTGCGTGG-TAGAGAATGAACTCACCTCGAATCCTTCGACCTGCAATCAGTACTACC-G 155 ******** *************** ********* ** *********** ******* * consensus_8445#0 CTGTCTGAGTGGAGAACGGATCCTGTTCAGCTGTACAGAGGGCAAAGGTGTTCAATCCCT 360 consensus_8445#1 CTGTCTGAGTGGAGAACGGATCCTGTTCAGCTGTACAGAGGGCAAAG-TGTTCAATCCCT 214 *********************************************** ************ consensus_8445#0 CCACGAAACGGTGCGTTACATCTGACCTCTACCCGTGCGATGAGACACAACCGGAGATCA 420 consensus_8445#1 CCACCAAACGGTGCGTTACATCCGACCTCTACCCGTGCGATGAGACACAACCGGAGATCA 274 **** ***************** ************************************* consensus_8445#0 CAAGCAGCGGAACCATCGTTGCGTCTGTCTTCACAACCTAAATGGGATCGTTCCACAGCC 480 consensus_8445#1 CAA-CAGCGGAACCATCGGTGC-TCTGTCTTCACAACCCAAATGGGATCGTTCCACACCC 332 *** ************** *** *************** ****************** ** consensus_8445#0 GTCCGATTGTGATAAGTACATCGTTTGCAGTGGAGGTTTGNAAACAGTGCAGTCCTGTGG 540 consensus_8445#1 GTCCGATTGTGATAAGTACATCGTTTGCAGTGGAGGTTTGCAAACAGTGCAGTCCTGTGG 392 **************************************** ******************* consensus_8445#0 ATATCGGGAGAATTTTTCAGTGGAAGAAGTTAGGTTGTGGCGAAGACGTCTCTTGCAGTG 600 consensus_8445#1 ATATCGGGAGAATTTTTCA-TGGAAGAAGTTAGGTTGTGGCGAAGACGTCTCTTGCAGTG 451 ******************* **************************************** consensus_8445#0 AATACTTTAACGGTTACGCCAGAACGCTCGAATCAGTCGCGTGCAACCGGACGAATCACT 660 consensus_8445#1 AATACTTCAACGGGTACGCCAGAACGCTCGAATCAGTCGCGTGCAACCGA--CAATCACT 509 ******* ***** *********************************** ******* consensus_8445#0 CCCGCTGGGCGGAACATCCTTACGGAAGTTGGTACGTACAGTTGACTGTGGAGCTCAGGA 720 consensus_8445#1 CCCGCTGG-CGGAACATCCTTACG-AAGTTGGTACGTACA-TTGATTGTGGCGCTCAGGA 566 ******** *************** *************** **** ***** ******** consensus_8445#0 GTCCTGTCCAGCTGTGNCCGAAAAGGTACCAAGTTTTTCCGCCTGGGAAACTTATCCAGG 780 consensus_8445#1 GTC-TGTC-AGCTGCGTC---GAAGGTACAA---TCTTTCGCT--GGAA--CTATCAGCG 614 *** **** ***** * * ******* * * ** *** **** **** * consensus_8445#0 CGGCCTGGTACTTTCCCGGGGGCTGGGTTGGAAAACGGAAACGNAGTTTGCACAAAGTGG 840 consensus_8445#1 CTGTCT---------TCCGGGGCTGG---------TGGAAACGAACGAGTTGCAGAGTGC 656 * * ** * ******** ******* * ** **** consensus_8445#0 CCGGCACCTAAATTAGTGGCCGCCCTTTTGGGCAAAAAAGCGGCACCAATTNCCGTTAGC 900 consensus_8445#1 C--GCACCTAATT--GTGGC-GCCTTT---GGCAAAAGCGCA--------CATCCTTATC 700 * ******** * ***** *** ** ******* ** * *** * consensus_8445#0 TCCTTGCGNAGGAAA-CGGTTACCTTTCAACAGGTTGCGGTCTTTTCACTTGGGGAATAT 959 consensus_8445#1 TCTGTGAGAAGTACTTCAAGTGCGTCTTCTGGATCT------------------------ 736 ** ** * ** * * * * * * * consensus_8445#0 TCCNTNTNGAGNTAGGACAGAAATTTTGGGGCCCCCGNGGATTTATTGAANTCTAACACA 1019 consensus_8445#1 ------------------------------------------------------------ consensus_8445#0 GCGGCCAGACAAANGGGGCCACATGCAACGATGANGNTTCCCCGGGGTAAAANCTTCCCA 1079 consensus_8445#1 ------------------------------------------------------------ consensus_8445#0 AAAGGGTGNCACCGGGGCAAGTTCGAGAGNGAGNAGTTAG 1119 consensus_8445#1 ---------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||