These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8499#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1047 fasta sequence [CCGCGGACGCGTGGGCTCGATCCATTTGTGGCTGACGTTTCCCTACTTGTAATTTGTGTTCCGGCGAACGAAAACAAAACCCAAAGGCGTCCGAGTGCGAGAGGCTAGGACTGGCTGCAATCGGAATCAAGTGCTG---CTCTTGAATCGCGCGCGTGTGTGTGCTGTGTGTGTGTGTGAAGTAAGATCAATCCACGCGCCCCAACCATGGATCCGGAGGCGTTCCTAGACATCGCCAACCAGGTGATCAAGCTGAAGATGTTCCCGTACTTTGACATCGCGCACAGCCTGCTGTGCGCACTGTC-GGTG-AAGGAGGATCTGGGCGCGGGCGCACACACCTTCTCCCGGAAGCACCCGCTCGCCTGCTGGCTGTCGACGATGCTGGTCGTCTTTGCCGGCGGCATGGTCGCGAACGGGCTGCTCGGCGAGCCGATCCTGGCGCCGCTCAAGAACACGCCCCAGCTGCTGGTCGCGACCGCCTGCTGGTACATCGTCTTCTACACGCCGTTCGACATCGGCTACAAGGTGGCCAAGTTCCTGCCGATCAAGCTGGTGGCCAGCGCGATGAAGGAAATCTACCGCGCAAAGAAGATCCACGACGGGGTGACGCACGCCGCCAAGCTGTACCCGAACGCCTTCATCATCATGATCATCATCGGTACGCTCAAGGGCAACGGTGCCGGTTTTACCAAGCTGATCGAGCGCCTGATCCGCGGTGTCTGGACCCCGACGGCGATGGAGTTCCTGCAGCCAAGCTTCTACACCAAGGCGTCCCTGATCGCGTCGATCATCTTCGTGCTGGACAAGAAGACGGATCTGATCTCGGCCCCGCACGCCCTCGTCTACTTCGGCATCGTCATCTTCCTGGTGTACTTCAAGCTGTCGTCGATCCTGCTCGGCATCCACGATCCGTTCGTGCCGTTCGAGAACCTGAGCTGCGCGCTGCTGTTCGGCGGCATCTGGGACAGCCTGGCCAAGATTCTGGGGCTGCGGCCAGGCCAAGGAGGAGCCGAAGGATGCGAAAAAGTCCAACTAAAGCCGGACACACTG] [+] EMBL BM592674 [CCGCGGACGCGTGGGCTCGATCCATTTGTGGCTGACGTTTCCCTACTTGTAATTTGTGTTCCGGCGAACGAAAACAAAACCCAAAGGCGTCCGAGTGCGAGAGGCTAGGACTGGCTGCAATCGGAATCAAGTGCTGGGCCTCTTGAATCGCGCGCGTGTGTGTGCTGTGTGTGTGTGTGAAGTAAGATCAATCCACGCGCCCCAACCATGGATCCGGAGGCGTTCCTAGACATCGCCAACCAGGTGATCAAGCTGAAGATGTTCCCGTACTTTGACATCGCGCACAGCCTGCTGTGCGCACTGTCGGGTGAAAGAAGGATCTGGGCGC GGCGCACACACCTTCT CCGGAAGCACCCGCTCGCCTGCTGG ] [+] EMBL BM645573 [ ccgCGAAAACAAAACCCAAAGGCGTCCGAGTGCGAGAGGCTAGGACTGGCTGCAATCGGAATCAAGTGCTG CTCTTGAATCGCGCGCGTGTGTGTGCTGTGTGTGTGTGTGAAGTAAGATCAATCCACGCGCCCCAACCATGGATCCGGAGGCGTTCCTAGACATCGCCAACCAGGTGATCAAGCTGAAGATGTTCCCGTACTTTGACATCGCGCACAGCCTGCTGTGCGCACTGTC GGTG AAGGAGGATCTGGGCGCGGGCGCACACACCTTCTCCCGGAAGCACCCGCTCGCCTGCTGGCTGTCGACGATGCTGGTCGTCTTTGCCGGCGGCATGGTCGCGAACGGGCTGCTCGGCGAGCCGATCCTGGCGCCGCTCAAGAACACGCCCCAGCTGCTGGTCGCGACCGCCTGCTGGTACATCGTCTTCTACACGCCGTTCGACATCGGCTACAAGGTGGCCAAGTTCCTGCCGATCAAGCTGGTGGCCAGCGCGATGAAGGAAATCTACCGCGCAAAGAAGATCCACGACGGGGTGACGCACGCCGCCAAGCTGTACCCGAACGCCTTCATCATCATGATCATCATCGGTACGCTCAAGGGCAACGGTGCCGGTTTTACCAAGCTGATCGAGCGCCTGATCCGCGGTGTCTGGACCCCGACGGCGATGGAGTTCCTGCAGCCAAGCTTCTAC ] [+] EMBL BM624182 [ ccgAAACAAAACGCAAAGGCGTCCGAGTGCGAGAGGCTAGGACTGGCTGCAATCGGAATCAAGTGCTG CTCTTGAATCGCGCGCGGGGGGGTGC TGTGTGTGAAGTAAGATCAATCCACGCGCCCCAACCATGGATCCGGAGGCGTTCCTAGACATCGCCAACCAGGTGATCAAGCTGAAGATGTTCCCGTACTTTGACATCGCGCACAGCCTGCTGTGCGCACTGTC GGTG AAGGAGGATCTGGGCGCGGGCGCACACACCTTCTCCCGGAAGCACCCGCTCGCCTGCTGGCTGTCGACGATGCTGGTCGTCTTTGCCGGCGGCATGGTCGCGAACGGGCTGCTCGGCGAGCCGATCCTGGCGCCGCTCAAGAACACGCCCCAGCTGCTGGTCGCGACCGCCTGCTGGTACATCGTCTTCTACACGCCGTTCGACATCGGCTACAAGGTGGCCAAGTTCCTGCCGATCAAGCTGGTGGCCAGCGCGATGAAGGAAATCTACCGCGCAAAGAAGATCCACGACGGGGTGACGCACGCCGCCAAGCTGTACCCGAACGCCTTCATCATCATGATCATCATCGGTACGCTCAAGGGCAACGGTGCCGGTTTTACCAAGCTGATCGAGCGCCTGATCCGCGGTGTCTGGACCCCGACGGCGA ] [+] EMBL BX615419 [ tGAATCAAGTGCTG CTCTTGAATCGCGCTCGTGTGTGTGCTGTGTGTGTGTGTGAAGTAAGATCAATCCACGCGCCCCAACCATGGATCCGGAGGCGTTCCTAGACATCGCCAACCAGGTGATCAAGCTGAAGATGTTCCCGTACTTTGACATCGCGCACAGCCTGCTGTGCGCACTGTC GGTG AAGGAGGATCTGGGCGCTGGCGCACACACCTTCTCCCGTAAGCACCCGCTCGCCTGCTGGCTGTCGACGATGCTGGTCGTCTTTGCCGGCGGCATGGTCGCGAACGGGCTGCTCGGCGAGCCGATCCTGGCGCCGCTCAAGAACACGCCCCAGCTGCTGGTCGCGACCGCCTGCTGGTACATCGTCTTCTACACGCCGTTCGACATCGGCTACAAGGTGGCCAAGTTCCTGCCGATCAAGCTGGTGGCCAGCGCGATGAAGGAAATCTACCGCGCAAAGAAGATCCACGACGGGGTGACGCACGCCGCCAAGCTGTACCCGAACGCCTTCATCATCATGATCATCATCGGTACGCTCAAGGGCAACGGTGCCGGTTTTACCAAGCTGATCGAGCGCCTGATCCGCGGTGTCTGTACCCCGACGGCGATGGAGTTCCTGCAGCCAAGCTTCTACACCAAGGCGTCCCTGATCGCGTCGATCATCTTCGTGCTGGACAAGAAGACGGATCTGATCTCGGCCCCGCACGCCCTC ] [+] EMBL BX608496 [ TGTGTGTGTGTGTGAAGTAAGATCAATCCACGCGCCCCAACCATGGATCCGGAGGCGTTCCTAGACATCGCCAACCAGGTGATCAAGCTGAAGATGTTCCCGTACTTTGACATCGCGCACAGCCTGCTGTGCGCACTGTC GGTG AAGGAGGATCTGGGCGCTGGCGCACACACCTTCTCCCGTAAGCACCCGCTCGCCTGCTGGCTGTCGACGATGCTGGTCGTCTTTGCCGGCGGCATGGTCGCGAACGGGCTGCTCGGCGAGCCGATCCTGGCGCCGCTCAAGAACACGCCCCAGCTGCTGGTCGCGACCGCCTGCTGGTACATCGTCTTCTACACGCCGTTCGACATCGGCTACAAGGTGGCCAAGTTCCTGCCGATCAAGCTGGTGGCCAGCGCGATGAAGGAAATCTACCGCGCAAAGAAGATCCACGACGGGGTGACGCACGCCGCCAAGCTGTACCCGAACGCCTTCATCATCATGATCATCATCGGTACGCTCAAGGGCAACGGTGCCGGTTTTACCAAGCTGATCGAGCGCCTGATCCGCGGTGTCTGTACCCCGACGGCGATGGAGTTCCTGCAGCCAAGCTTCTACACCAAGGCGTCCCTGATCGCGTCGATCATCTTCGTGCTGGACAAGAAGACGGATCTGATCTCGGCCCCGCACGCCCTCGTCTACTTCGGCATCGTCATCTTC ] [+] EMBL BM624354 [ ccgGTCGACGATGCTGGTCGTCTTTGCCGGCGGCATGGTCGCGAACGGGCTGCTCGGCGAGCCGATCCTGGCGCCGCTCAAGAACACGCCCCAGCTGCTGGTCGCGACCGCCTGCTGGTACATCGTCTTCTACACGCCGTTCGACATCGGCTACAAGGTGGCCAAGTTCCTGCCGATCAAGCTGGTGGCCAGCGCGATGAAGGAAATCTACCGCGCAAAGAAGATCCACGACGGGGTGACGCACGCCGCCAAGCTGTACCCGAACGCCTTCATCATCATGATCATCATCGGTACGCTCAAGGGCAACGGTGCCGGTTTTACCAAGCTGATCGAGCGCCTGATCCGCGGTGTCTGGACCCCGACGGCGATGGAGTTCCTGCAGCCAAGCTTCTACACCAAGGCGTCCCTGATCGCGTCGATCATCTTCGTGCTGGACAAGAAGACGGATCTGATCTCGGCCCCGCACGCCCTCGTCTACTTCGGCATCGTCATCTTCCTGGTGTACTTCAAGCTGTCGTCGATCCTGCTCGGCATCCACGATCCGTTCGTGCCGTTCGAGAACCTGAGCTGCGCGCTGCTGTTCGGCGGCATCTGGGACAGCCTGGCCAAGATTCTGGGGCTGCGGCCAGGCCAAGGAGGAGCCGAAGGATGCGAAAAAGTCCAACTAAAGCCGGACACACTG] consensusID : consensus_8499#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 719 fasta sequence [CCGCTCCGCTCGAGCCGTACAGTCGTGCCGTGTTCGTTCCGGTCCGTGTGTGCACACGCAGCTTTCTATAGCCCGTCCTGTCCGTCCGTTTTGGTGCGGAATCAAGTGCTGCTCTTGAATCGCGCGCGTGTGTGTGC------TGTGTGTGAAGTAAGATCAATCCACGCGCCCCAACCATGGATCCGGAGGCGTTCCTAGACATCGCCAACCAGGTGATCAAGCTGAAGATGTTCCCGTACTTTGACATCGCGCACAGCCTGCTGTGCGCACTGTCGGTGAAGGAGGATCTGGGCGCGGGCGCACACACCTTCTCCCGGAAGCACCCGCTCGCCTGCTGGCTGTCGACGATGCTGGTCGTCTTTGCCGGCGGCATGGTCGCGAACGGGCTGCTCGGCGAGCCGATCCTGGCGCCGCTCAAGAACACGCCCCAGCTGCTGGTCGCGACCGCCTGCTGGTACATCGTCTTCTACACGCCGTTCGACATCGGCTACAAGGTGGCCAAGTTCCTGCCGATCAAGCTGGTGGCCAGCGCGATGAAGG-AAATCTACCGCGCAAAGAAGATCCACGACGGGGTGACGCACGCCGCCAAGCTGTACCCGAACGCCTTCATCATCATGATCATCATCGGTACGCTCAAGGGCAACGGTGCCGGTTTTACCAAGCTGATCGAGCGCCTGATCCGCGGTGTCTGGACCCCGACGGCGATGGAGTTCCTGCAGCCA] [+] EMBL BM628716 [CCGCTTAGCTCGAGCCGTACAGTCGTGCCGTGTTCGTTCCGGTCCGTGTGTGCACACGCAGCTTTCTATAGCCCGTCCTGTCCGTCCGTTTTGGTGCGGAATCAAGTGCTGCTCTTGAATCGCGCGCGTGTGTGTGC TGTGTGTGAAGTAAGATCAATCCACGCGCCCCAACCATGGATCCGGAGGCGTTCCTAGACATCGCCAACCAGGTGATCAAGCTGAAGATGTTCCCGTACTTTGACATCGCGCACAGCCTGCTGTGCGCACTGTCGGTGAAGGAGGATCTGGGCGCGGGCGCACACACCTTCTCCCGGAAGCACCCGCTCGCCTGCTGGCTGTCGACGATGCTGGTCGTCTTTGCCGGCGGCATGGTCGCGAACGGGCTGCTCGGCGAGCCGATCCTGGCGCCGCTCAAGAACACGCCCCAGCTGCTGGTCGCGACCGCCTGCTGGTACATCGTCTTCTACACGCCGTTCGACATCGGCTACAAGGTGGCCAAGTTCCTGCCGATCAAGCTGGTGGGCAGCGCGATGAAGGAAAATCTACCGCGCAA ] [+] EMBL BM585692 [ CCGCTCGAGCCGTACAGTCGTGCCGTGTTCGTTCCGGTCCGTGTGTGCACACGCAGCTTTCTATAGCCCGTCCTGTCCGTCCGTTTTGGTGCGGAATCAAGTGCTGCTCTTGAATCGCGCGCGTGTGTGTGC TGTGTGTGAAGTAAGATCAATCCACGCGCCCCAACCATGGATCCGGAGGCGTTCCTAGACATCGCCAACCAGGTGATCAAGCTGAAGATGTTCCCGTACTTTGACATCGCGCACAGCCTGCTGTGCGCACTGTCGGTGAAGGAGGATCTGGGCGCGGGCGCACACACCTTCTCCCGGAAGCACCCGCTCGCCTGCTGGCTGTCGACGATGCTGGTCGTCTTTGCCGGCGGCATGGTCGCGAACGGGCTGCTCGGCGAGCCGATCCTGGCGCCGCTCAAGAACACGCCCCAGCTGCTGGTCGCGACCGCCTGCTGGTACATCGTCTTCTACACGCCGTTCGACATCGGCTACAAGGTGGCCAAGTTCCTGCCGATCAAGCTGGTGGCCAGCGCGATGAAGG AAATCTACCGCGCAAAGAAGATCCACGACGGGGTGACGCACGCCGCCAAGCTGTACC ] [+] EMBL BM626722 [ CCGC CCACGCGTCCGGTCGTGCCGTGTTCGTTCCGGTCCGTGTGTGCACACGCAGCTTTCTATAGCCCGTCCTGTCCGTCCGTTTTGGTGCGGAATC ] [+] EMBL BM640773 [ ccgGTCGTGCCGTGTTCGTTCCGGTCCGTGTGTGTACACGCAGCTTTCTATAGCCCGTCCTGTCCGTCCGTTTTGGTGCGGAATCAAGTGCTGCTCTTGAATCGCGCGCGTGTGTGTGCTGTGTGTGTGTGTGAAGTAAGATCAATCCACGCGCCCCAACCATGGATCCGGAGGCGTTCCTAGACATCGCCAACCAGGTGATCAAGCTGAAGATGTTCCCGTACTTTGACATCGCGCACATTCTGCTGTGCGCACTGTCGGTGAAGGAGGATCTGGGCGCGGGCGCACACCCCCTCTCCCGGAAGCACCCGCTCGCCTGCTGGCTGTCGACGATGCTGGTCGTCTTTGCCGGCGGCATGGTCGCGAACGGGCTGCTCGGCGAGCCGATCCTGGCGCCGCTCAAGAACACGCCCCAGCTGCTGGTCGCGACCGCCTGCTGGTACATCGTCTTCTACACGCCGTTCGACATCGGCTACAAGGTGGCCAAGTTCCTGCCGATCAAGCTGGTGGCCAGCGCGATGAAGG AAATCTACCGCGCAAAGAAGATCCACGACGGGGTGACGCACGCCGCCAAGCTGTACCCGAACGCCTTCATCATCATGATCATCATCGGTACGCTCAAGGGCAACGGTGCCGGTTTTACCAAGCTGATCGAGCGCCTGATCCGCGGTGTCTGGACCCCGACGGCGATGGAGTTCCTGCAGCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8499#0 CCGCGGACGCGTGGGCTCGATCCATTTGTGGCTGACGTTTCCCTACTTGTAATTTGTGTT 60 consensus_8499#1 ----------------CCGCTCCGCTCGAGCCGTACAGT------CGTGCCGTGTTCGTT 38 ** *** * * * * ** * * ** * * *** consensus_8499#0 CCGGCGAACGAAAACAAAACCCAAAGGCGTCCGAGTGCGAGAGGCTAGGACTGGCTGCAA 120 consensus_8499#1 CCGGTCCGTGTGTGCACA---CGCAGCTTTCTATAGCCCGTCCTGTCCGTCCGTTTTGGT 95 **** * ** * * ** ** * * * * * * consensus_8499#0 TCGGAATCAAGTGCTGCTCTTGAATCGCGCGCGTGTGTGTGCTGTGTGTGTGTGTGAAGT 180 consensus_8499#1 GCGGAATCAAGTGCTGCTCTTGAATCGCGCGCGTGTGTGTGCTGTGTGTG------AAGT 149 ************************************************* **** consensus_8499#0 AAGATCAATCCACGCGCCCCAACCATGGATCCGGAGGCGTTCCTAGACATCGCCAACCAG 240 consensus_8499#1 AAGATCAATCCACGCGCCCCAACCATGGATCCGGAGGCGTTCCTAGACATCGCCAACCAG 209 ************************************************************ consensus_8499#0 GTGATCAAGCTGAAGATGTTCCCGTACTTTGACATCGCGCACAGCCTGCTGTGCGCACTG 300 consensus_8499#1 GTGATCAAGCTGAAGATGTTCCCGTACTTTGACATCGCGCACAGCCTGCTGTGCGCACTG 269 ************************************************************ consensus_8499#0 TCGGTGAAGGAGGATCTGGGCGCGGGCGCACACACCTTCTCCCGGAAGCACCCGCTCGCC 360 consensus_8499#1 TCGGTGAAGGAGGATCTGGGCGCGGGCGCACACACCTTCTCCCGGAAGCACCCGCTCGCC 329 ************************************************************ consensus_8499#0 TGCTGGCTGTCGACGATGCTGGTCGTCTTTGCCGGCGGCATGGTCGCGAACGGGCTGCTC 420 consensus_8499#1 TGCTGGCTGTCGACGATGCTGGTCGTCTTTGCCGGCGGCATGGTCGCGAACGGGCTGCTC 389 ************************************************************ consensus_8499#0 GGCGAGCCGATCCTGGCGCCGCTCAAGAACACGCCCCAGCTGCTGGTCGCGACCGCCTGC 480 consensus_8499#1 GGCGAGCCGATCCTGGCGCCGCTCAAGAACACGCCCCAGCTGCTGGTCGCGACCGCCTGC 449 ************************************************************ consensus_8499#0 TGGTACATCGTCTTCTACACGCCGTTCGACATCGGCTACAAGGTGGCCAAGTTCCTGCCG 540 consensus_8499#1 TGGTACATCGTCTTCTACACGCCGTTCGACATCGGCTACAAGGTGGCCAAGTTCCTGCCG 509 ************************************************************ consensus_8499#0 ATCAAGCTGGTGGCCAGCGCGATGAAGGAAATCTACCGCGCAAAGAAGATCCACGACGGG 600 consensus_8499#1 ATCAAGCTGGTGGCCAGCGCGATGAAGGAAATCTACCGCGCAAAGAAGATCCACGACGGG 569 ************************************************************ consensus_8499#0 GTGACGCACGCCGCCAAGCTGTACCCGAACGCCTTCATCATCATGATCATCATCGGTACG 660 consensus_8499#1 GTGACGCACGCCGCCAAGCTGTACCCGAACGCCTTCATCATCATGATCATCATCGGTACG 629 ************************************************************ consensus_8499#0 CTCAAGGGCAACGGTGCCGGTTTTACCAAGCTGATCGAGCGCCTGATCCGCGGTGTCTGG 720 consensus_8499#1 CTCAAGGGCAACGGTGCCGGTTTTACCAAGCTGATCGAGCGCCTGATCCGCGGTGTCTGG 689 ************************************************************ consensus_8499#0 ACCCCGACGGCGATGGAGTTCCTGCAGCCAAGCTTCTACACCAAGGCGTCCCTGATCGCG 780 consensus_8499#1 ACCCCGACGGCGATGGAGTTCCTGCAGCCA------------------------------ 719 ****************************** consensus_8499#0 TCGATCATCTTCGTGCTGGACAAGAAGACGGATCTGATCTCGGCCCCGCACGCCCTCGTC 840 consensus_8499#1 ------------------------------------------------------------ consensus_8499#0 TACTTCGGCATCGTCATCTTCCTGGTGTACTTCAAGCTGTCGTCGATCCTGCTCGGCATC 900 consensus_8499#1 ------------------------------------------------------------ consensus_8499#0 CACGATCCGTTCGTGCCGTTCGAGAACCTGAGCTGCGCGCTGCTGTTCGGCGGCATCTGG 960 consensus_8499#1 ------------------------------------------------------------ consensus_8499#0 GACAGCCTGGCCAAGATTCTGGGGCTGCGGCCAGGCCAAGGAGGAGCCGAAGGATGCGAA 1020 consensus_8499#1 ------------------------------------------------------------ consensus_8499#0 AAAGTCCAACTAAAGCCGGACACACTG 1047 consensus_8499#1 --------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||