These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8507#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 718 fasta sequence [TGCCGAGGCTCACAGGAAAACACAACCGCAAAC---ATTAATGCAAATCGGTGCGCATATTTCTTATCGCATTAAAACGAGTTTCCTCTGTCGTTTTTCGTGAAAAATGTTTAAACAATAGTGAAGCAGGAGCGAGTTGTAGAAAACCGGTCAACAAACCTTTTGCGCCGTGCCGCCACACGCGTGTGTGCTGCTGCCAGCTGTTCGGCCTCGGACGGCTCAGTGCTCAGGGGAACGGAAGAAAACGGGCAATGTAGAACACACAGCTGGAGCTTTCTCTCAACTAAAAAGAAACACAATCCTTTCTATCCTTCCTATCGTACGTGGCTGTGAAATGTTTTGCTGTTTGAAGAACTGCCTCAACGGTGTGCTGCCGGCTCAGTCCGTGCACATCACGAAAACAGCCAACCCGGTACAACTGGACTCGTCACATATGGGCCATGAAGTGGTCATCATCAAAAACGGGCTGCGAGCCTGCGGAACCGGTGGCGTACTGGCAAACGCACCGCTCGTCCAATCCAAATCGTATTTCGAGGTGAAGCTGCAGCAGTCCGGCCACTGGTCGATCGGGCTGGCCACGCAGCAAACGGACCTGAACCAATCGGTCGGCGGCAAGGACCGGGGAATCGTGGTGTCTCAACTCCAACCATCTCGTACTGCACGGGGGCGACGTCATCTACCGGCTGGACGCGAGCAAAGGGAGTGCGGTACCAAACGGGGG] [+] EMBL AL933420 [TGCCGAGGCTCACAGGAAAACACAAACACAAACATTATTAATGCAAATCGGTGCGCATATTTCTTATCGCATTAAAACGTGTTTCCTCTGTCGTTTTTCGTGAAAAATGTATAAACAATAGTGAAGCAGGAGCGATTTATAGAAAAACGGTCAACAATCCTTTTGCGCCGTACCGCCGCGCGC TGTGTGCTGCTGCCAGCTGTTCGGCCTCGGACGGCTCAGTGCTCAGGGGAACGGAAGAAAACGGGCAATGTAGAACACACAGCTGGAGCTTTCTCTCAACTAAAAAGAAACACAATCCTTTCTATCCTTCCTATCGTACGTGGCTGTGAAATGTTTTGCTGTTTGAAGAATTGCCTCAACGGTGTGCTGCCGGCTCAGTCCGTGCACATCACGAAAACAG CAACCCGGTGCAACTGGACTCGTCACATATGGGCCATGAAGTGGTCATCATCAAAAACGGACTGCGAGCCTGCGGAACCGGTGGCGTACTGGCAAACGCACCGCTCGTCCAATCCAAATCGTATTTCGAG ] [+] EMBL BM582639 [ CCGCAAAC ATTAATGCAAATCGGTGCGCATATTTCTTATCGCATTAAAACGAGTTTCCTCTGTCGTTTTTCGTGAAAAATGTTTAAACAATAGTGAAGCAGGAGCGAGTTGTAGAAAACCGGTCAACAAACCTTTTGCGCCGTGCCGCCACACGCGTGTGTGCTGCTGCCAGCTGTTCGGCCTCGGACGGCTCAGTGCTCAGGGGAACGGAAGAAAACGGGCAATGTAGAACACACAGCTGGAGCTTTCTCTCAACTAAAAAGAAACACAATCCTTTCTATCCTTCCTATCGTACGTGGCTGTGAAATGTTTTGCTGTTTGAAGAACTGCCTCAACGGTGTGCTGCCGGCTCAGTCCGTGCACATCACGAAAACAGCCAACCCGGTACAACTGGACTCGTCACATATGGGCCATGAAGTGGTCATCATCAAAAACGGGCTGCGAGCCTGCGGAACCGGTGGCGTACTGGCAAACGCACCGCTCGTCCAATCCAAATCGTATTTCGAGGTGAAGCTGCAGCAGTCCGGCCACTGGTCGATCGGGCTGGCCACGCAGCAAACGGACCTGAACCAATCGGTCGGCGGCAAGGACCGGGAAATCGTGGTGTCTCAACTCCAACCATCTCGTACTGCACGGGGGCGACGTCATCTACCGGCTGGACGCGAGCAAAGGGAGTGCGGTACCAAACGGGGG] [+] EMBL BM614170 [ CCGCAAAC ATTAATGCAAATCGGTGCGCATATTTCTTATCGCATTAAAACGAGTTTCCTCTGTCGTTTTTCGTGAAAAATGTTTAAACAATAGTGAAGCAGGAGCGAGTTGTAGAAAACCGGTCAACAAACCTTTTGCGCCGTGCCGCCACACGCGTGTGTGCTGCTGCCAGCTGTTCGGCCTCGGACGGCTCAGTGCTCAGGGGAACGGAAGAAAACGGGCAATGTAGAACACACAGCTGGAGCTTTCTCTCAACTAAAAAGAAACACAATCCTTTCTATCCTTCCTATCGTACGTGGCTGTGAAATGTTTTGCTGTTTGAAGAACTGCCTCAACGGTGTGCTGCCGGCTCAGTCCGTGCACATCACGAAAACAGCCAACCCGGTACAACTGGACTCGTCACATATGGGCCATGAAGTGGTCATCATC AAAACGGGCTGCGAGCCTGCGGA ] [+] EMBL BM638286 [ ggGCAAAC ATTAATGCAAATCGGTGCGCATATTTCTTATCGCATTAAAACGAGTTTCCTCTGTCGTTTTTCGTGAAAAATGTTTAAACAATAGTGAAGCAGGAGCGAGTTGTAGAAAACCGGTCAACAAACCTTTTGCGCCGTGCCGCCACACGCGTGTGTGCTGCTGCCAGCTGTTCGGCCTCGGACGGCTCAGTGCTCAGGGGAACGGAAGAAAACGGGCAATGTAGAACACACAGCTGGAGCTTTCTCTCAACTAAAAAGAAACACAATCCTTTCTATCCTTCCTATCGTACGTGGCTGTG ] [+] EMBL BM656378 [ ccgccacCAAAC ATTAATGCAAATCGGTGCGCATATTTCTTATCGCATTAAAACGAGTTTCCTCTGTCGTTTTTCGTGAAAAATGTTTAAACAATAGTGAAGCAGGAGCGAGTTGTAGAAAACCGGTCAACAAACCTTTTGCGCCGTGCCGCCACACGCGTGTGTGCTGCTGCCAGCTGTTCGGCCTCGGACGGCTCAGTGCTCAGGGGAACGGAAGAAAACGGGCAATGTAGAACACACAGCTGGAGCTTTCTCTCAACTAAAAAGAAACACAATCCTTTCTATCCTTCCTATCGTACGTGGCTGTGAAATGTTTTGCTGTTTGAAGAACTGCCTCAACGGTGTGCTGCCGGCTCAGTCCGTGCACATCACGAAAACAGCCAACCCGGTACAACTGGACTCGTCACATATGGGCCATGAAGTGGTCATCATCAAAAACGGGCTGCGAGCCTGCGGAACCGGTGGCGTACTGGCAAACGCACCGCTCGTCCAATCCAAATCGTATTTCGAGGTGAAGCTGCAGCAGTCCGGCCACTGGTCGATCGGGCTGGCCACGCAGCAAACGGACCTGAACCAATCGGTCGGCGGCAAGGACCGGGGAATCGTGGTGTCTCAACTCCAACCATCTCGTACTGCAC ] [+] EMBL BX628213 [ GCGCATATTTCTTATCGCATTAAAACGTGTTTCCTCTGTCGTTTTTCGTGAAAAATGTATAAACAATAGTGAAGCAGGAGCGATTTATAGAAAAACGGTCAACAATCCTTTTGCGCCGTACCGCCGCGCGC TGTGTGCTGCTGCCAGCTGTTCGGCCTCGGACGGCTCAGTGCTCAGGGGAACGGAAGAAAACGGGCAATGTAGAACACACAGCTGGAGCTTTCTCTCAACTAAAAAGAAACACAATCCTTTCTATCCTTCCTATCGTACGTGGCTGTGAAATGTTTTGCTGTTTGAAGAATTGCCTCAACGGTGTGCTGCCGGCTCAGTCCGTGCACATCACGAAAACAGCCAACCCGGTGCAACTGGACTCGTCACATATGGGCCATGAAGTGGTCATCATCAAAAACGGACTGCGAGCCTGCGGAACCGGTGGCGTACTGGCAAACGCACCGCTCGTCCAATCCAAATCGTATTTCGAGGTGAAGCTGCAGCAGTCCGGCCACTGGTCGATCGGGCTGGCCACGCAGCAAACGGACCTGAACCAATCGGTCGGCGGCAAGGACC GGGAATCGTGGTGTCTCAACTCCAACCATCTCTTACTGCACGGGGGCGACGTCATCTACCGGCT ] [+] EMBL BM636726 [ GCATATTTCTTATCGCATTAAAACGAGTTTCCTCTGTCGTTTTTCGTGAAAAATGTTTAAACAATAGTGAAGCAGGAGCGAGTTGTAGAAAACCGGTCAACAAACCTTTTGCGCCGTGCCGCCACACGCGTGTGTGCTGCTGCCAGCTGTTCGGCCTCGGACGGCTCAGTGCTCAGGGGAACGGAAGAAAACGGGCAATGTAGAACACACAGCTGGAGCTTTCTCTCAACTAAAAAGAAACACAATCCTTTCTATCCTTCCTATCGTACGTGGCTGTGAAATGTTTTGCTGTTTGAAGAACTGCCTCAACGGTGTGCTGCCGGCTCAGTCCGTGCACATCACG ] [+] EMBL BM625949 [ CTGTCGTTTTTCGTGAAAAATGTTTAAACAATAGTGAAGCAGGAGCGAGTTGTAGAAAACCGGTCAACAAACCTTTTGCGCCGTGCCGCCACACGCGTGTGTGCTGCTGCCAGCTGTTCGGCCTCGGACGGCTCAGTGCTCAGGGGAACGGAAGAAAACGGGCAATGTAGAACACACAGCTGGAGCTTTCTCTCAACTAAAAAGAAACACAATCCTTTCTATCCTTCCTATCGTACGTGGCTGTGAAATGTTTTGCTGTTTGAAGAACTGCCTCAACGGTGTGCTGCCGGCTCAGTCCGTGCACATCACGAAAACAGCCAACCCGG ] consensusID : consensus_8507#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 685 fasta sequence [CTCAGCAGATCGCAGCAGGTTAATCGGTGCGCATATTATCTTATCGCATTAAAACGTGTTTCCTCTGTCGTTTTTCGTGAAAAATGTATAAACAATAGTGAAGCAGGAGCGATTTATAGAAAAACGGTCAACAATCCTTTTGCGCCGTACCGCCGCGCGCTGTGTGCTGCTGCCAGCTGTTCGGCCTCGGAAGAAAACGGGCAATGTAGAACACACAGCTGGAGCTTTCTCTCAACTAAAAAGAAACACAATCCTTTCTATCCTTCCTATCGTACGTGGCTGTGAAATGTTTTGCTGTTTGAAGAATTGCCTCAACGGTGTGCTGCCGGCTCAGTCCGTGCACATCACGAAAACAGCAACCCGGTGCAACTGGACTCGTCACCATATGGGCCATGACAGTGGTCATCATCAAAAACGGACTGAGAGACCTGCGGAACCGGTGGCGTACTGGCAAAAGCACCGCTCGTCCAATCCAAATCGTATTTCGACGGTGAAGCTGCACGCAGTCCGGCACTGGTCGATCAGGGCTGGACACGACAGCAAACGGACCTGAACCAAATCGGNACGGCGGAAACGGACCGGGAATACAGTCGGTGTNCTCAACTCCAAACATACTCGTACATCGCACGGGAGCGCCGACGTCCATCTANCCGGGGCTGGGACCGCGAAGCCAACGGGGGACGTG] [+] EMBL AL696823 [CTCAGCAGATCGCAGCAGGTTAATCGGTGCGCATATTATCTTATCGCATTAAAACGTGTTTCCTCTGTCGTTTTTCGTGAAAAATGTATAAACAATAGTGAAGCAGGAGCGATTTATAGAAAAACGGTCAACAATCCTTTTGCGCCGTACCGCCGCGCGCTGTGTGCTGCTGCCAGCTGTTCGGCCTCGGAAGAAAACGGGCAATGTAGAACACACAGCTGGAGCTTTCTCTCAACTAAAAAGAAACACAATCCTTTCTATCCTTCCTATCGTACGTGGCTGTGAAATGTTTTGCTGTTTGAAGAATTGCCTCAACGGTGTGCTGCCGGCTCAGTCCGTGCACATCACGAAAACAGCAACCCGGTGCAACTGGACTCGTCACCATATGGGCCATGACAGTGGTCATCATCAAAAACGGACTGAGAGACCTGCGGAACCGGTGGCGTACTGGCAAAAGCACCGCTCGTCCAATCCAAATCGTATTTCGACGGTGAAGCTGCACGCAGTCCGGCACTGGTCGATCAGGGCTGGACACGACAGCAAACGGACCTGAACCAAATCGGNACGGCGGAAACGGACCGGGAATACAGTCGGTGTNCTCAACTCCAAACATACTCGTACATCGCACGGGAGCGCCGACGTCCATCTANCCGGGGCTGGGACCGCGAAGCCAACGGGGGACGTG] consensusID : consensus_8507#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 536 fasta sequence [AGATCCCCCNAGNTTCAGTGCGCATATTTCTTATCGCATTAAACGTGTTTCCTCTGTCGTTTTTCGTGAAAAATGTATAAACAATAGTGAAGCAGGAGCGATTTATAGAAAAACGGTCAACAATCCTTTTGCGCCGTACGCCGCGCGCTGTGTGCTGCTGCCAGCTGTTCGGCCTCGGACGGTCAGTGCTCAGGGGAACGGAAGAAAACGGGCAATGTAGAACACACAGTGGAGCTTTCTCTCAACTAAAAAGAAACACAATCCTTTCTATCTTCCTATCGTACGTGGCTGTGAAATGTCTTGCTGTTTGAAGAATTGGCTCAACGGTGTGCTGGCGGCTCAGTCCGTGCACATCACGAAAACAGCAACCGGTGCAACTGGACTCGTCACATATGGGCCATGAAGTGGTCATCATCAAAAACGGACTGCGAGCCTGCGGAACCGGTGGCGTACTGGNCAAACGCACCGCTCGTCCCAATCCAAATCGTATTTCGAGGTGAAAGGCTGCAGCAGTCCGGCCACTGGTCGATCGGGCT] [+] EMBL AL692684 [AGATCCCCCNAGNTTCAGTGCGCATATTTCTTATCGCATTAAACGTGTTTCCTCTGTCGTTTTTCGTGAAAAATGTATAAACAATAGTGAAGCAGGAGCGATTTATAGAAAAACGGTCAACAATCCTTTTGCGCCGTACGCCGCGCGCTGTGTGCTGCTGCCAGCTGTTCGGCCTCGGACGGTCAGTGCTCAGGGGAACGGAAGAAAACGGGCAATGTAGAACACACAGTGGAGCTTTCTCTCAACTAAAAAGAAACACAATCCTTTCTATCTTCCTATCGTACGTGGCTGTGAAATGTCTTGCTGTTTGAAGAATTGGCTCAACGGTGTGCTGGCGGCTCAGTCCGTGCACATCACGAAAACAGCAACCGGTGCAACTGGACTCGTCACATATGGGCCATGAAGTGGTCATCATCAAAAACGGACTGCGAGCCTGCGGAACCGGTGGCGTACTGGNCAAACGCACCGCTCGTCCCAATCCAAATCGTATTTCGAGGTGAAAGGCTGCAGCAGTCCGGCCACTGGTCGATCGGGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8507#0 TGCCGAGGCTCACAGGAAAACACAACCGCAAACATTAATGCAAAT-CGGTGCGCATATT- 58 consensus_8507#2 -------------------------------AGATCCCCCNAGNTTCAGTGCGCATATT- 28 consensus_8507#1 --------------------CTCAGCAGATCGCAGCAG-GTTAAT-CGGTGCGCATATTA 38 * * * *********** consensus_8507#0 TCTTATCGCATTAAAACGAGTTTCCTCTGTCGTTTTTCGTGAAAAATGTTTAAACAATAG 118 consensus_8507#2 TCTTATCGCATTAAA-CGTGTTTCCTCTGTCGTTTTTCGTGAAAAATGTATAAACAATAG 87 consensus_8507#1 TCTTATCGCATTAAAACGTGTTTCCTCTGTCGTTTTTCGTGAAAAATGTATAAACAATAG 98 *************** ** ****************************** ********** consensus_8507#0 TGAAGCAGGAGCGAGTTGTAGAAAACCGGTCAACAAACCTTTTGCGCCGTGCCGCCACAC 178 consensus_8507#2 TGAAGCAGGAGCGATTTATAGAAAAACGGTCAACAATCCTTTTGCGCCGTAC-GCCGCGC 146 consensus_8507#1 TGAAGCAGGAGCGATTTATAGAAAAACGGTCAACAATCCTTTTGCGCCGTACCGCCGCGC 158 ************** ** ******* ********** ************* * *** * * consensus_8507#0 GCGTGTGTGCTGCTGCCAGCTGTTCGGCCTCGGACGGCTCAGTGCTCAGGGGAACGGAAG 238 consensus_8507#2 GC-TGTGTGCTGCTGCCAGCTGTTCGGCCTCGGACGG-TCAGTGCTCAGGGGAACGGAAG 204 consensus_8507#1 GC-TGTGTGCTGCTGCCAGCTGTTCGGCCTCGGA------------------------AG 193 ** ******************************* ** consensus_8507#0 AAAACGGGCAATGTAGAACACACAGCTGGAGCTTTCTCTCAACTAAAAAGAAACACAATC 298 consensus_8507#2 AAAACGGGCAATGTAGAACACACAG-TGGAGCTTTCTCTCAACTAAAAAGAAACACAATC 263 consensus_8507#1 AAAACGGGCAATGTAGAACACACAGCTGGAGCTTTCTCTCAACTAAAAAGAAACACAATC 253 ************************* ********************************** consensus_8507#0 CTTTCTATCCTTCCTATCGTACGTGGCTGTGAAATGTTTTGCTGTTTGAAGAACTGCCTC 358 consensus_8507#2 CTTTCTATC-TTCCTATCGTACGTGGCTGTGAAATGTCTTGCTGTTTGAAGAATTGGCTC 322 consensus_8507#1 CTTTCTATCCTTCCTATCGTACGTGGCTGTGAAATGTTTTGCTGTTTGAAGAATTGCCTC 313 ********* *************************** *************** ** *** consensus_8507#0 AACGGTGTGCTGCCGGCTCAGTCCGTGCACATCACGAAAACAGCCAACCCGGTACAACTG 418 consensus_8507#2 AACGGTGTGCTGGCGGCTCAGTCCGTGCACATCACGAAAACAGCAA--CCGGTGCAACTG 380 consensus_8507#1 AACGGTGTGCTGCCGGCTCAGTCCGTGCACATCACGAAAACAGCAA-CCCGGTGCAACTG 372 ************ ******************************* * ***** ****** consensus_8507#0 GACTCGTCAC-ATATGGGCCATGA-AGTGGTCATCATCAAAAACGGGCTGCGAG-CCTGC 475 consensus_8507#2 GACTCGTCAC-ATATGGGCCATGA-AGTGGTCATCATCAAAAACGGACTGCGAG-CCTGC 437 consensus_8507#1 GACTCGTCACCATATGGGCCATGACAGTGGTCATCATCAAAAACGGACTGAGAGACCTGC 432 ********** ************* ********************* *** *** ***** consensus_8507#0 GGAACCGGTGGCGTACTGGC-AAACGCACCGCTCGTCC-AATCCAAATCGTATTTCGA-G 532 consensus_8507#2 GGAACCGGTGGCGTACTGGNCAAACGCACCGCTCGTCCCAATCCAAATCGTATTTCGA-G 496 consensus_8507#1 GGAACCGGTGGCGTACTGGC-AAAAGCACCGCTCGTCC-AATCCAAATCGTATTTCGACG 490 ******************* *** ************* ******************* * consensus_8507#0 GTGAA--GCTGCA-GCAGTCCGGCCACTGGTCGATC-GGGCTGGCCACG-CAGCAAACGG 587 consensus_8507#2 GTGAAAGGCTGCA-GCAGTCCGGCCACTGGTCGATC-GGGCT------------------ 536 consensus_8507#1 GTGAA--GCTGCACGCAGTCCGGC-ACTGGTCGATCAGGGCTGGACACGACAGCAAACGG 547 ***** ****** ********** *********** ***** consensus_8507#0 ACCTGAACCAA-TCGGT-CGGCGGCAA-GGACCGGGGAATCG--TGGTGTC-TCAACTCC 641 consensus_8507#2 ------------------------------------------------------------ consensus_8507#1 ACCTGAACCAAATCGGNACGGCGGAAACGGACCGGGAATACAGTCGGTGTNCTCAACTCC 607 consensus_8507#0 AACCAT-CTCGTAC--TGCACGGGGGCGACGTCATCTACCGGCTGGACGCGAGCAAAGGG 698 consensus_8507#2 ------------------------------------------------------------ consensus_8507#1 AAACATACTCGTACATCGCACGGGAGCGCCGACGTCCATCTANCCGGGGCTGGGACCGCG 667 consensus_8507#0 AGTGCGGTACCAAACGGGGG 718 consensus_8507#2 -------------------- consensus_8507#1 AAGCCAACGGGGGACGTG-- 685 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||