These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8521#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 719 fasta sequence [CCGGTCAGTCAGGTGATGTTTTTCTCTTCGTCTCAAAACAGAAATCCCATTTTGTAGCAAAAGCGCTTGAACTGTTTTCACATCTTCGCACTTCTTCTCGTACGTAAAATGGCTCTTCTGTCGGCAATGAAAGGAAAGCTGATCTCCGTCATTGGAGATGAGGACACATGCGTCGGATTCCTGCTTGGCGGAGTGGGTGAGATCAACAAGAACCGTCACCCCAACTTCATGGTTGTCGACAAAAATACTGCCGTCAGCGAGATTGAGGATTGCTTCAAGCGCTTCATCAAGCGCGACGATATCGACATCATTCTGATCAATCAGAACTACGCCGAGCTGATCCGTCACGTGATCGATTCGCACACTGCGCCCACCCCGGCGG-TGCTGGAAATCCCATCCAAAGACCACCCGTACGATGCTAGCAAGGATTCGATTCTGCGTCGCGCTAAGGGTATGTTCAATCCGGAAGATATGATTGCTAACCGCGGTTAGATGGCCTGTGCAAAAGGGGATCAAGAGATGGGACGTGCAGTCGGCGGTAACTGCGGCCGGATTGCGTA-TTTTGAACCTCTCCCATTAACAGCCATGTAGTATTAACGCTCCCCCTCCCTCTTCTCGTGTACTATACGATCGTGTGTTGTTTGTGTTTCCCACCCATCGTTATGTTGTTGGCATTCCAAGGATCAAAAGAATAAAGGATCATTNCAGCTGTACAAAAA] [+] EMBL BM649645 [CCGGTCAGTCAGGTGATGTTTTTCTCTTCGTCTCAAAACAGAAATCCCATTTTGTAGCAAAAGCGCTTGGACTGTTTTCACATCTTCGCACTTCTTCTCGTACGTAAAATGGCTCTTCTGTCGGCAATGAAAGGAAAGCTGATCTCCGTCATTGGAGATGAGGACACATGCGTCGGATTCCTGCTTGGCGGAGTGGGTGAGATCAACAAGAACCGTCACCCCAACTTCATGGTTGTCGACAAAAATACTGCCGTCAGCGAGATTGAGGATTGCTTCAAGCGCTTCATCAAGCGCGACGATATCGACATCATTCTGATCAATCAGAACTACGCCGAGCTGATCCGTCACGTGATCGATTCGCACACTGCGCCCACCCCGGCGG TGCTGGAAATCCCATCCAAAGACCACCCGTACGATGCTAGCAAGGATTCGATTCTGCGTCGCGCTAAGGGTATGTTCAATCCGGAAGATATGATTGCTAACCGCGGTTAGATGGCCTGTGCAAAAGGGGATCAAGAGATGGGACGTGCAGTCGGCGGTAACTGCGGCGGGATTGCGTA TTTTGAACCTCTCCCATTAACAGCCATGTAGTATTAACGCTCCCCCTCCCTCTTCTCGTGTACTATACGATCGTG ] [+] EMBL BM578317 [ ccgGTTTTTCTCTTCGTCTCAAAACAGAAATCCCATTTTGTAGCAAAAGCGCTTGGACTGTTTTCACATCTTCGCACTTCTTCTCGTACGTAAAATGGCTCTTCTGTCGGCAATGAAAGGAAAGCTGATCTCCGTCATTGGAGATGAGGACACATGCGTCGGATTCCTGCTTGGCGGAGTGGGTGAGATCAACAAGAACCGTCACCCCAACTTCATGGTTGTCGACAAAAATACTGCCGTCAGCGAGATTGAGGATTGCTTCAAGCGCTTCATCAAGCGCGACGATATCGACATCATTCTGATCAATCAGAACTACGCCGAGCTGATCCGTCACGTGATCGATTCGCACACTGCGCCCACCCCGGCGG TGCTGGAAATCCCATCCAAAGACCACCCGTACGATGCTAGCAAGGATTCGATTCTGCGTCGCGCTAAGGGTATGTTCAATCCGGAAGATATGATTGCTAACCGCGGTTAGATGGCCTGTGCAAAAGGGGATCAAGAGATGGGACGTGCAGTCGGCGGTAACTGCGGCGGGA ] [+] EMBL AGESTS5T7 [ TTTCTCTTCGTCTCAAAACAGAAATCCCATTTTGTAGCAAAAGCGCTTGAACTGTTTTCACATCTTCGCACTTCTTCTCGTACGTAAAATGGCTCTTCTGT ] [+] EMBL CF542054 [ TCAAAACAGAAATCCCATTTTGTAGCAAAAGCGCTTGAACTGATTTCACATCTTCGCACTTCTTCTCGTACGTAAAATGGCTCTTCTGTCGGCAATGAAAGGAAAGCTGATCTCCGTCATTGGAGATGAGGACACATGCGTCGGATTCCTGCTTGGCGGAGTGGGTGAGATCAACAAGAACCGTCACCCCAACTTCATGGTTGTCGACAAAAATACAGCCGTTAGCGAGATTGAGGATTGCTTCAAGCGCTTCATCAAGCGCGACGATATCGACATCATTCTGATCAATCAGAACTACGCAGAGCTAATCCGTCACGTGATCGATTCGCACACTGCGCCCACCCCGGCGG TGCTGGAAATCCCATCCAAAGACCACCCGTACGATGCTAGCAAGGATTCGATTCTGCGTCGCGCTAAGGGTATGTTCAATCCGGAAGATATGATTGCTAACCGCGGTTAGATGGCCTGTGCAAAAGGGGATCAAGAGATGGGACGTGCAGTCGGCGGTAACTGCGGCCGGATTGCGTATTTTTNAACCTCTCCCAATAACAGCCATGTAGTATTAACGCTCCCCCTCCCTCTNCTCGTGTACTATACGATCGTGTGTNGTNTGTGTNT CCACCCATCGTTATGTNG TGGNATNNCAAGGATCAAAANAATAAAGGATCATTNCAGCTGTACAAAAA] [+] EMBL AGG10AGVA [ TCAAAACAGAAATCCCATTTTGTAGCAAAAGCGCTTGAACTGTTTTTTCATCTTCGCACTTCTTCTCGTACGTAAAATGGCTCTTCTCTCGGCAATGAAAGGAAAGCTGATCTCCGTCATTGGACATGAGGACACATGCGTCGGATTCCTGCTTGGCGGAGTGGGTGAGATCAACAAGAACCGTCACCCCAACTTCATGGTTGTCGACAAAAATACTGCCGTCAGCGAGATTGAGGATTGCTTCAAGCGCTTCATCAAGCGCGACGATATCGACATCATTGTAATCAATCAGAACTACGCCGAGCTGATCCGTCACGTGATCGATTCGCACACTGCACCCACCCCGGCGGATG TGGAAATCCCATCCAAAGACCACCCGTACGATGCTAGCAAGGATTCGATTCTGCGTCGTGCTAAGGGTATGTTCAATCCGGAAGATATGATTGCTAACCGCGGTTAGATGGCCTGTACAAAAGGGGATCAAGAGATGGGACGTGCAGTCGGCGGTAACTGCGGCCGGATTGCGTA TTTTGAACCTCTCCCATTAACAGCCATGTAGTATTAACGCTCGGGGGGGCCCTTCTCGTGTACAATACGATCGTGTGTTGTTTGTGTTTCCCACCCATCGTTATGTTGTTGGCATTCCAAGGATCAAAAGAATAAAGGATCATT ] [+] EMBL BM640683 [ ccgAAAACAGAAATCCCATTTTGTAGCAAAAGCGCTTGGACTGTTTTCACATCTTCGCACTTCTTCTCGTACGTAAAATGGCTCTTCTGTCGGCAATGAAAGGAAAGCTGATCTCCGTCATTGGAGATGAGGACACATGCGTCGGATTCCTGCTTGGCGGAGTGGGTGAGATCAACAAGAACCGTCACCCCAACTTCATGGTTGTCGACAAAAATACTGCCGTCAGCGAGATTGAGGATTGCTTCAAGCGCTTCATCAAGCGCGACGATATCGACATCATTCTGATCAATCAGAACTACGCCGAGCTGATCCGTCACGTGATCGATTCGCACACTGCGCCCACCCCGGCGG TGCTGGAAATCCCATCCAAAGACCACCCGTACGATGCTAGCAAGGATTCGATTCTGCGTCGCGCTAAGGGTATGTTCAATCCGGAAGATATGATTGCTAACCGCGGTTAGATGGCCTGTGCAAAAGGGGATCAAGAGATGGGACGTGCAGTCGGCGGTAACTGCGGCGGGATTGCGTA TTTTGAACCTCTCCCATTAACAGCCATGTAGTATTAACGCTCCCCCTCCCTCTTCTCGTGTACTATACGATCGTGTGTTGTTTGTGTTTCCCACCCATCGTTATGTTGTTGGCATTCCAAGGATCAAAAGAATAAAGGATCAT ] [+] EMBL BM596998 [ ccgCCCATTTTGTAGCAAAAGCGCTTGAACTGTTTTCACATCTTCGCACTTCTTCTCGTACGTAAAATGGCTCTTCTGTCGGCAATGAAAGGAAAGCTGATCTCCGTCATTGGAGATGAGGACACATGCGTCGGATTCCTGCTTGGCGGAGTGGGTGAGATCAACAAGAACCGTCACCCCAACTTCATGGTTGTCGACAAAAATACTGCCGTCAGCGAGATTGAGGATTGCTTCAAGCGCTTCATCAAGCGCGACGATATCGACATCATTCTGATCAATCAGAACTACGCCGAGCTGATCCGTCACGTGATCGATTCGCACACTGCACCCACCCCGGCGG TGCTGGAAATCCCATCCAAAGACCACCCGTACGATGCTAGCAAGGATTCGATTCTGCGTCGCGCTAAGGGTATGTTCAATCCGGAAGATATGATTGCTAACCGCGGTTAGATGGCCTGTACAAAAGGGGATCAAGAGATGGGACGTGCAGTCGGCGGTAACTGCGGCCGGATTGCGTA TTTTGAACCTCTCCCATTAACAGCCATGTAGTATTAACGCTCCCCCTCCCTCTTCTCGTGTACAATACGATCGTGTGTTGTTTGTGTTTCCCACCCATCGTTATGTTGTTGGC ] [+] EMBL BX617333 [ CATTTTGTAGCAAAAGCGCTTGAACTGTTTTCACATCTTCGCACTTCTTCTCGTACGTAAAATGGCTCTTCTGTCGGCAATGAAAGGAAAGCTGATCTCCGTCATTGGAGATGAGGACACATGCGTCGGATTCCTGCTTGGCGGAGTGGGTGAGATCAACAAGAACCGTCACCCCAACTTCATGGTTGTCGACAAAAATACTGCCGTTAGCGAGATTGAGGATTGCTTCAAGCGCTTCATCAAGCGCGACGATATCGACATTATTCTGATCAATCAGAACTACGCCGAGCTGATCCGTCACGTGATCGATTCGCACACTGCGCCCACCCCGGCGG TACTGGAAATCCCATCCAAAGACCACCCGTACGATGCTAGCAAGGATTCGATTCTGCGTCGCGCTAAGGGTATGTTCAATCCGGAAGATATGATTGCTAACCGCGGTTAGATGGCCTGTACAAAAGGGGATCAAGAGATGGGACGTGCAGTCGGCGGTAACTGCGGCCGGATTGCGTA TTTTGAACCTCTCCCATTAACAGCCATGTAGTATTAACGCTCCCCCTCCCTCTTCTCGTGTACTATACGATCGTGTGTTGTTTGTGTTTCCCACCCATCGTTATGTTGTTGGCATTCCAAGGATCAAAACAA ] [+] EMBL BM619889 [ ccgCTCGTACGTAAAATGGCTCTTCTGTCGGCAATGAAAGGAAAGCTGATCTCCGTCATTGGAGATGAGGACACATGCGTCGGATTCCTGCTTGGCGGAGTGGGTGAGATCAACAAGAACCGTCACCCCAACTTCATGGTTGTCGACAAAAATACTGCCGTCAGCGAGATTGAGGATTGCTTCAAGCGCTTCATCAAGCGCGACGATATCGACATCATTCTGATCAATCAGAACTACGCCGAGCTGATCCGTCACGTGATCGATTCGCACACTGCGCCCACCCCGGCGG TGCTGGAAATCCCATCCAAAGACCACCCGTACGATGCTAGCAAGGATTCGATTCTGCGTCGCGCTAAGGGTATGTTCAATCCGGAAGATATGATTGCTAACCGCGGTTAGATGGCCTGTGCAAAAGGGGATCAAGAGATGGGACGTGCAGTCGGCGGTAACTGCGGCGGGATTGCGTA TTTTGAACCTCTCCCATTAACAGCCATGTAGTATTAACGCTCCCCCTCCCTCTTCTCGTGTACTATACGATCGTGTGTTGTTTGTGTTTCCCACCCATCGTTATGTTGTTGG ] [+] EMBL BX615025 [ TGATCTCCGTCATTGGAGATGAGGACACATGCGTCGGATTCCTGCTTGGCGGAGTGGGTGAGATCAACAAGAACCGTCACCCCAACTTCATGGTTGTCGACAAAAATACTGCCGTCAGCGAGATTGAGGATTGCTTCAAGCGCTTCATCAAGCGCGACGATATCGACATCATTCTGATCAATCAGAACTACGCCGAGCTGATCCGTCACGTGATCGATTCGCACACTGCACCCACCCCGGCGG TGCTGGAAATCCCATCCAAAGACCACCCGTACGATGCTAGCAAGGATTCGATTCTGCGTCGCGCTAAGGGTATGTTCAATCCGGAAGATATGATTGCTAACCGCGGTTAGATGGCCTGTACAAAAGGGGATCAAGAGATGGGACGTGCAGTCGGCGGTAACTGCGGCCGGATTGCGTA TTTTGAACCTCTCCCAT ] consensusID : consensus_8521#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 715 fasta sequence [AGATCCCCGAGGTTATTGTAGCAAAGCGCTGACTGTTTTACATCTTNNCACTTCTTCTCGTACGTAAAATGGCTCTTCTGTCGGCAATGAAAGGAAAGCTGATCTCCGTCATTGGAGATGAGGACACATGCGTCGGATTCCTGCTTGGCGGAGTGGGTGAGATCAACAAGAACCGTCACCCAACTTCATGGTTGGGTTTCCCGGAACAAAAAAATACTGGGCGTCAGCGAGATTGAAGGGATTGCTTCAAGCGCTTCATCAAGCGCGACGATATCGACATCATTCTGATCAATCAGAACTACGCCGAGCTGATCCGTCACGTGATCGATTCGCACACTGCACCCACCCCGGCGGTGCTGGAAATCCCATCCAAAGACCACCCGTACGATGCTAGCAAGGATTCGATTCTGCGTCGCGCTAAGGGTATGTTCAATCCGGCAAGATATGATTGCTAACCGCGGTTAGATGGCCTGTACAAAAGGGGATCAAGAGATGTGACGTGCAGCTCGGCGGTAACCTGCGGCGCGATTGCGTATTTGAACCTCTCCCATTAAACAGCATGTAGTATTAAAGCCCCCTCCTACTTTTCGTGTAACATAANATCCGGGTGTGGCTNGGGTTCCCCNCCCATCGGCATGTATGTCGGATTCACAAGGATCCAACGAATTACAGCGCTCTTTCCACCTGGGTCACACCCCCACCACACACCCGCTTT] [+] EMBL AL930462 [AGATCCCCGAGGTTATTGTAGCAAAGCGCTGACTGTTTTACATCTTNNCACTTCTTCTCGTACGTAAAATGGCTCTTCTGTCGGCAATGAAAGGAAAGCTGATCTCCGTCATTGGAGATGAGGACACATGCGTCGGATTCCTGCTTGGCGGAGTGGGTGAGATCAACAAGAACCGTCACCCAACTTCATGGTTGGGTTTCCCGGAACAAAAAAATACTGGGCGTCAGCGAGATTGAAGGGATTGCTTCAAGCGCTTCATCAAGCGCGACGATATCGACATCATTCTGATCAATCAGAACTACGCCGAGCTGATCCGTCACGTGATCGATTCGCACACTGCACCCACCCCGGCGGTGCTGGAAATCCCATCCAAAGACCACCCGTACGATGCTAGCAAGGATTCGATTCTGCGTCGCGCTAAGGGTATGTTCAATCCGGCAAGATATGATTGCTAACCGCGGTTAGATGGCCTGTACAAAAGGGGATCAAGAGATGTGACGTGCAGCTCGGCGGTAACCTGCGGCGCGATTGCGTATTTGAACCTCTCCCATTAAACAGCATGTAGTATTAAAGCCCCCTCCTACTTTTCGTGTAACATAANATCCGGGTGTGGCTNGGGTTCCCCNCCCATCGGCATGTATGTCGGATTCACAAGGATCCAACGAATTACAGCGCTCTTTCCACCTGGGTCACACCCCCACCACACACCCGCTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8521#0 CCGGTCAGTCAGGTGATGTTTTTCTCTTCGTCTCAAAACAGAAATCCCATTTTGTAGCAA 60 consensus_8521#1 ---------------------------------------AGATCCCCGAGGTTATTGTAG 21 *** ** * ** * * * consensus_8521#0 AAGCGCTTGAACTGTTTTCACATCTTCGCACTTCTTCTCGTACGTAAAATGGCTCTTCTG 120 consensus_8521#1 CAAAGCGCTGACTGTTTT-ACATCTTNNCACTTCTTCTCGTACGTAAAATGGCTCTTCTG 80 * ** ******** ******* ******************************** consensus_8521#0 TCGGCAATGAAAGGAAAGCTGATCTCCGTCATTGGAGATGAGGACACATGCGTCGGATTC 180 consensus_8521#1 TCGGCAATGAAAGGAAAGCTGATCTCCGTCATTGGAGATGAGGACACATGCGTCGGATTC 140 ************************************************************ consensus_8521#0 CTGCTTGGCGGAGTGGGTGAGATCAACAAGAACCGTCACCCCAACTTCATGGTTG----- 235 consensus_8521#1 CTGCTTGGCGGAGTGGGTGAGATCAACAAGAACCGTCACCC-AACTTCATGGTTGGGTTT 199 ***************************************** ************* consensus_8521#0 -TCG----ACAAAAATACTGC-CGTCAGCGAGATTGA--GGATTGCTTCAAGCGCTTCAT 287 consensus_8521#1 CCCGGAACAAAAAAATACTGGGCGTCAGCGAGATTGAAGGGATTGCTTCAAGCGCTTCAT 259 ** * ********** *************** ********************* consensus_8521#0 CAAGCGCGACGATATCGACATCATTCTGATCAATCAGAACTACGCCGAGCTGATCCGTCA 347 consensus_8521#1 CAAGCGCGACGATATCGACATCATTCTGATCAATCAGAACTACGCCGAGCTGATCCGTCA 319 ************************************************************ consensus_8521#0 CGTGATCGATTCGCACACTGCGCCCACCCCGGCGGTGCTGGAAATCCCATCCAAAGACCA 407 consensus_8521#1 CGTGATCGATTCGCACACTGCACCCACCCCGGCGGTGCTGGAAATCCCATCCAAAGACCA 379 ********************* ************************************** consensus_8521#0 CCCGTACGATGCTAGCAAGGATTCGATTCTGCGTCGCGCTAAGGGTATGTTCAATCCGG- 466 consensus_8521#1 CCCGTACGATGCTAGCAAGGATTCGATTCTGCGTCGCGCTAAGGGTATGTTCAATCCGGC 439 *********************************************************** consensus_8521#0 AAGATATGATTGCTAACCGCGGTTAGATGGCCTGTGCAAAAGGGGATCAAGAGATGGGAC 526 consensus_8521#1 AAGATATGATTGCTAACCGCGGTTAGATGGCCTGTACAAAAGGGGATCAAGAGATGTGAC 499 *********************************** ******************** *** consensus_8521#0 GTGCAG-TCGGCGGTAAC-TGCGGCCGGATTGCGTATTTTGAACCTCTCCCATTAACAGC 584 consensus_8521#1 GTGCAGCTCGGCGGTAACCTGCGGCGCGATTGCGTATTT-GAACCTCTCCCATTAAACAG 558 ****** *********** ****** ************ **************** consensus_8521#0 CATGTAGTATTAACGCTCCCCCTCCCTCTTCTCGTGTACTATACGATC-GTGTGTTGTTT 643 consensus_8521#1 CATGTAGTATTAAAGC--CCCCTCCTACTTTTCGTGTAACATAANATCCGGGTGTGGCTN 616 ************* ** ******* *** ******* *** *** * **** * * consensus_8521#0 GTGTTTCCCACCCATCGTTATGT-TGTTGGCATTCCAAGGATCAAAAGAATAAAGGA--T 700 consensus_8521#1 GGGTTCCCCNCCCATCGGCATGTATGTCGGATTCACAAGGATCCAACGAATTACAGCGCT 676 * *** *** ******* **** *** ** * ******** ** **** * * * consensus_8521#0 CATTNCAGCTGTACAAAAA-------------------- 719 consensus_8521#1 CTTTCCACCTGGGTCACACCCCCACCACACACCCGCTTT 715 * ** ** *** * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||