These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8525#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1244 fasta sequence [CCGCGGACGCGTGGGCGGGATTGGGAGCGGCACATCACTTTGCGCGGGTTAAGATGTATTCTCATGTGCTGTCGGTTGTGTTGTGCTGGTGTTTGTCGTTGCTGTTCGTGAGTGTGGCTGGAAGCAATGATACAGCTACTGTTCCTGCGGAGAAGTCTACGGATCCGACCTCCACCGGGTACGGG-TTTGAGATGATAATGGCCAAACTGGACTACCTACAGTACAAGCTGCTCGAGATGGACTTTGTGATGAAGGAGCACAGCGAAGGTATCGGACAGAACCAGGCCCATCTGGAGAAAGTGTTCGGCAGCATGCTGTGGGCGATCAGTCGGTTGGATCAAGCGGTCGGCAATAATCTAACCGCGCTGCAGGCCCAATCCTGGAAGATACTATCCCGCCAAACCATCTGCTCCAACCACGACCAAATGCGGAGTGAACTGTTCAGTCTCGCGCCGAGGCAGGGCCTTGCGCCCAATGCACGCTCCCTGTTCGAGCTGCAGGGTATGCGGCACAAGGGCCCGTTCGAATCGTGCCGCGATGAGCCGTCCAAGATGTCGGGCAAGTATTTGTTGCGGGCGAGCAACGACGTGGAACCGTTCCCGGCGTACTGCGAGCAGACCAAGTTCGGC--GGTGGTTGGTTGGTGATACAGCATCGGTTTAAGGGTGCGCTCGATTTCTTCCGCAACTGGACGGAGTACCGGGATGGGTTCGGGAACGTCGATCAGGAGTTTTGGATCGGGTTGGAACGGTTGCACCAGCTGACGTCGGTCAAACCGTACCAGTTGCTGATCCAAAAAAAAAACTTTTGCCGGTGACTATCGGTACGCCCGGTACAAGGAGTTTTGAAATTGGCAGTGAGGCGGAGATGTACAGCTTGAAGAAGCTGGGCGCGTACAGCGGCACTGGCGGCGACTCGCTGACGTACCACAAGGGGCACAAGTTCACGACGATGGATCGCGATAACGATGGGGCACCCACGAACTGTGCGGTGACGTGCGAGGGTGCCTGGTGGTACAACAACTGGCACCATTCGAATCTGAACGGTCGGTTCACTGAACGCCGGTGGATGTGAAGTCGATCTCNTGGTATCATTTCAANGAGNCTCCGCCACCCACGGGCACTGGCTTACACCTAGGATGACTGACTACCACGCGACAGCGGTTCAAGCGCTCTGAANCGCCAACNTGGTNNGCACACTAACTANTGTTCACCATAACATANCCCTANAAGCCACCGGTTATAAC] [+] EMBL BM581714 [CCGCGGACGCGTGGGCGGGATTGGGAGCGGCACATCACTTTGCGCGGGTTAAGATGTATTCTCATGTGCTGTCGGTTGTGTTGTGTTGGTGTTTGTCGTTGCTGTTCGTGAGTGTGGCTGGAAGCAATGATACAGCTACTGTTCCTGCGGAGAAGTCTACGGATCCGACCTCCACCGGGTACGGG TTTGAGATGATAATGGCCAAACTGGACTACCTACAGTACAAGCTGCTGGAGATGGACTTTGTGATGAAGGAGCACAGCGAAGGTATCGGACAGAACCAGGCCCATCTGGAGAAAGTGTTCGGCAGCATGCTGTGGGCGATCAGTCGGTTGGATCAAGCGGTCGGCAATAATCTAACCGCGCTGCAGGCCCAATCCTGGAAGATACTATCCCGCCAAACCATCTGCTCCAACCACGACCAAATGCGGAGTGAGCTGTTCAGTCTTGCGCCAAGGCAGGGCCTTGCACCCAATGCACGCTCCCTGTTCGAGCTGCAGGGTATGCGGCACAAGGGCCCGTTCGAATCGTGCCGCGATGAGCCGTCGAAGATGTCGGGCAAGTATTTGTTG ] [+] EMBL BM635117 [ ccGGCGGGATTGGGAGCGGCACATCACTTTGCGCGGGTTAAGATGTATTCTCATGTGCTGTCGGTTGTGTTGTGTTGGTGTTTGTCGTTGCTGTTCGTGAGTGTGGCTGGAAGCAATGATACAGCTACTGTTCCTGCGGAGAAGTCTACGGATCCGACCTCCACCGGGTACGGG TTTGAGATGATAATGGCCAAACTGGACTACCTACAGTACAAGCTGCTGGAGATGGACTTTGTGATGAAGGAGCACAGCGAAGGTATCGGACAGAACCAGGCCCATCTGGAGAAAGTGTTCGGCAGCATGCTGTGGGCGATCAGTCGGTTGGATCAAGCGGTCGGCAATAATCTAACCGCGCTGCAGGCCCAATCCTGGAAGATACTATCCCGCCAAACCATCTGCTCCAACCACGACCAAATGCGGAGTGAGCTGTTCAGTCTTGCGCCAAGGCAGGGCCTTGCACCCAATGCACGCTCCCTGTTCGAGCTGCAGGGTATGCGGCACAAGGGCCCGTTCGAATCGTGCCGCGATGAGCCGTCGAAGATGTCGGGCAAGTATTTGTTGCGGGCGAGCAACGACGTGGAACCGTTCCCGGCGTACTGCGAGCAGACCAAGTTCCGCGGGGGGGTTGGTTGGTGATACAGCA ] [+] EMBL BM606137 [ ccgGGAAGCGGCACATCACTTTGCGCGGATTAAGATGTATTCTCACGTGCTGTCGGTTGTGTTGTGCTGGTGTTTGTCGTTGCTGTGCGTGAGTGTGGCTGGAAGCAATGATACAGCTACCGTTCCTGCGGAGAAGTCTACGGATCCGAGCTCCACCGGGTACGGG TTTGAGATGATAATGGCCAAACTGGACTACCTACAGTACAAGCTGCTCGAGATGGACTTTGTGATGAAGGAGCACAGCGAAGGTATCGGACAGAACCAGGCCCATCTGGAGAAAGTGTTCGGCAGCATGCTGTGGGCGATCAGTCGGTTGGATCAAGCGGTCGGCAATAATCTAACCGCGCTGCAGGCCCAATCCTGGAAGATACTATCCCGCCAAACCATCTGCTCCAACCACGACCAAATGCGGAGTGAACTGTTCAGTCTCGCGCCGAGGCAGGGCCTTGCGCCCAATGCACGCTCCCTGTTCGAGCTGCAGGGTATGCGGCACAAGGGCCCGTTCGAATCGTGCCGCGATGAG CGTCCAAGATGTCGGGCAAGTATTTGTTGCGGGCGAGCAACGACGTGGAACCGTTCCCGGCGTACTGCGAGCAGACCAAGTTCGGC GGTGGTTGGTTGGTGATACAG ] [+] EMBL BX621698 [ GCGGCACATCACTTTGCGCGGGTTAAGATGTATTCTCATGTGCTGTCGGTTGTGTTGTGCTGGTGTTTGTCGTTGCTGTTCGTGATTGTGGCTGGAAGCAATGATACAGCTACTGTTCCTGCGGAGAAGTCTACGGATCCGACCTCCACCGGGTACGGG TTTGAGATGATAATGGCCAAACTGGACTACCTACAGTACAAGCTGCTCGAGATGGACTTTGTGATGAAGGAGCACAGCGAAGGTATCGGACAGAACCAGGCCCATCTGGAGAAAGTGTTCGGCAGCATGCTGTGGGCGATCAGTCGGTTGGATCAAGCGGTCGGCAATAATCTAACCGCGCTGCAGGCTCAATCCTGGAAGATACTATCCCGCCAAACCATCTGCTCCAACCACGACCAAATGCGGAGTGAATTGTTCAGTCTCGCGCCGAGGCAGGGCCTTGCGCCCAATGCACGCTCCCTGTTCGAGCTGCAGGGTATGCGGCACAAGGGCCCGTTCGAATCGTGCCGCGATGAGCCGTCCAAGATGTCGGGCAAGTATTTGTTGCGGGCGAGCAACGACGTGGAACCGTTCCCGGCGTACTGCGAGCAGACCAAGTTCGGC GGTGGTTGGTTGGTGATACAGCATCGGTTTAAGGGTGCGCTCGATTTCTTCCGCAACTGGACGGAGTACCG ] [+] EMBL AGA283033 [ CACATCACTTTGCGCGGGTTAAGATGTATTCTCATGTGCTGTCGGTTGTGTTGTGCTGGTGTTTGTCGTTGCTGTTCGTGATTGTGGCTGGAAGCAATGATACAGCTACTGTTCCTGCGGAGAAGTCTACGGATCCGACCTCCACCGGGTACGGG TTTGAGATGATAATGGCCAAACTGGACTACCTACAGTACAAGCTGCTCGAGATGGACTTTGTGATGAAGGAGCACAGCGAAGGTATCGGACAGA ] [+] EMBL BX624501 [ TCTCATGTGCTGTCGGTTGTGTTGTGCTGGTGTTTGTCGTTGCTGTTCGTGATTGTGGCTGGAAGCAATGATACAGCTACTGTTCCTGCGGAGAAGTCTACGGATCCGACCTCCACCGGGTACGGGTTTTGAGATGATAATGGCCAAACTGGACTACCTACAGTACAAGCTGCTCGAGATGGACTTTGTGATGAAGGAGCACAGCGAAGGTATCGGACAGAACCAGGCCCATCTGGAGAAAGTGTTCGGCAGCATGCTGTGGGCGATCAGTCGGTTGGATCAAGCGGTCGGCAATAATCTAACCGCGCTGCAGGCTCAATCCTGGAAGATACTATCCCGCCAAACCATCTGCTCCAACCACGACCAAATGCGGAGTGAATTGTTCAGTCTCGCGCCGAGGCAGGGCCTTGCGCCCAATGCACGCTCCCTGTTCGAGCTGCAGGGTATGCGGCACAAGGGCCCGTTCGAATCGTGCCGCGATGAGCCGTCCAAGATGTCGGGCAAGTATTTGTTGCGGGCGAGCAACGACGTGGAACCGTTCCCGGCGTACTGCGAGCAGACCAAGTTCGGC GGTGGTTGGTTGGTGATACAGCATCGGTTTAAGGGTGCGCTCGATTTCTTCCGCAACTGG ] [+] EMBL BM579295 [ ccgGGACTTTGTGATGAAGGAGCACAGCGAAGGTATCGGACAGAACCAGGCCCATCTGGAGAAAGTGTTCGGCAGCATGCTGTGGGCGATCAGTCGGTTGGATCAAGCGGTCGGCAATAATCTAACCGCGCTGCAGGCCCAATCCTGGAAGATACTATCCCGCCAAACCATCTGCTCCAACCACGACCAAATGCGGAGTGAGCTGTTCAGTCTTGCGCCAAGGCAGGGCCTTGCACCCAATGCACGCTCCCTGTTCGAGCTGCAGGGTATGCGGCACAAGGGCCCGTTCGAATCGTGCCGCGATGAGCCGTCGAAGATGTCGGGCAAGTATTTGTTGCGGGCGAGCAACGACGTGGAACCGTTCCCGGCGTACTGCGAGCAGACCAAGTTCGGC GGTGGTTGGTTGGTGATACAGCATCGGTTTAAGGGTGCGCTCGATTTCTTCCGCAACTGGACGGAGTACCGCGATGGGTTC ] [-] EMBL AGA281420 [ tmGGCGATCAGTCGGTTGGATCAAGCGGTCGGCAATAATCTAACCGCGCTGCAGGCTCAATCCTGGAAGATACTATCCCGCCAAACCATCTGCTCCAACCACGACCAAATGCGGAGTGAATTGTTCAGTCTCGCGCCGAGGCAGGGCCTTGCGCCCAATGCACGCTCCCTGTTCGAGCTGCAGGGTATGCGGCACAAGGGCCCGTTCGAATCGTGCCGCGATGAGCCGTCCAAGATGTCGGGCAAGTATTTGTTGCGGGCGAGCAACGACGTGGAACCGTTCCCGGCGTACTGCGAGCAGACCAAGTTCGGC GGTGGTTGGTTGGTGATACAGCATCGGTTTAAGGGTGCGCTCGATTTCTTCCGCAACTGGACGGAGTACCGGGATGGGTTCGGGAACGTCGATCAGGAGTTTTGGATCGGGTTGGAACGGTTGCACCAGCTGACGTCGGTCAAACCGTACCAGTTGCTGATCCAAAAAAAAAA ] [+] EMBL BX617294 [ CCACGACCAAATGCGGAGTGAATTGTTCAGTCTCGCGCCGAGGCAGGGCCTTGCGCCCAATGCACGCTCCCTGTTCGAGCTGCAGGGTATGCGGCACAAGGGCCCGTTCGAATCGTGCCGCGATGAGCCGTCCAAGATGTCGGGCAAGTATTTGTTGCGGGCGAGCAACGACGTGGAACCGTTCCCGGCGTACTGCGAGCAGACCAAGTTCGGC GGTGGTTGGTTGGTGATACAGCATCGGTTTAAGGGTGCGCTCGATTTCTTCCGCAACTGGACGGAGTACCGGGATGGGTTCGGGAACGTCGATCAGTAGTTTTGGATCGGGTTGGAACGGTTGCACCAGCTGA ] [+] EMBL AL693080 [ ccgagGTTNCCGGCGTACTGCGAGCAGACCAAG TCGGC GGTGGTTGGTTGGTGATACAGCATCGGTTTAAGGGTGCGCTCGATTTCTTCCGCAACTGGACGGAGTACCGGGATGGGTTCGGGAACGTCGATCAGGAG TTTGGATCGGGTTGGAACGGTTGCACCAGCTGACGTCGGTCAAACCGTACCAGTTGCTGATCGAAGTGGAAGACTTTTGCCGGTGACTATCGGTACGCCCGGTACAAGGAGTTTTGAAATTGGCAGTGAGGCGGAGATGTACAGCTTGAAGAAGCTGGGCGCGTACAGCGGCACTGGCGGCGACTCGCTGACGTACCACAAGGGGCACAAGTTCACGACGATGGATCGCGATAACGATGGGGCACCCACGAACTGTGCGGTGACGTGCGAGGGTGCCTGGTGGTACAACAACTGGCACCATTCGAATCTGAACGGTCGGTTCACTGAACGCCGGTGGATGTGAAGTCGATCTCNTGGTATCATTTCAANGAGNCTCCGCCACCCACGGGCACTGGCTTACACCTAGGATGACTGACTACCACGCGACAGCGGTTCAAGCGCTCTGAANCGCCAACNTGGTNNGCACACTAACTANTGTTCACCATAACATANCCCTANAAGCCACCGGTTATAAC] consensusID : consensus_8525#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 513 fasta sequence [CCGCGCAACTGGACGGAGTACCGCGATGGGTTCGGGAACGTCGATCAGGAGTTTTGGATCGGGTTGGAACGGTTGCACCAGCTGACGTCGGTCAAACCGTACCAGTTGCTGATCGAGGTGGAAGACTTTGCCGGTGACTATCGGTACGCCCGGTACAAGGAGTTTGAAATTGGCAGTGAGGCAGAGATGTACAGCTTGAAGAAGCTGGGCGCGTACAGCGGCACTGGCGGCGACTCGCTGACGTACCACAAGGGGCACAAGTTCACAACGATGGATCGCGATAACGATGGGGCACCCACGAACTGTGCGGTGACGTGCGAGGGTGCCTGGTGGTACAACAACTGCCACCATTCGAATCTGAACGGTCGGTTCATGAACGCTGTGGATGTGAAGTCGATCTCGTGGTATCATTTCAAGAGCTCGCACCAGGGCATGGCTTACACTAGGATGATGATAAAGGAGGTTTAGATTGAAGCAAGTGGTGGAATAATATGTAAGATAAATAAATTAAGC] [+] EMBL BM591140 [CCGCGCAACTGGACGGAGTACCGCGATGGGTTCGGGAACGTCGATCAGGAGTTTTGGATCGGGTTGGAACGGTTGCACCAGCTGACGTCGGTCAAACCGTACCAGTTGCTGATCGAGGTGGAAGACTTTGCCGGTGACTATCGGTACGCCCGGTACAAGGAGTTTGAAATTGGCAGTGAGGCAGAGATGTACAGCTTGAAGAAGCTGGGCGCGTACAGCGGCACTGGCGGCGACTCGCTGACGTACCACAAGGGGCACAAGTTCACAACGATGGATCGCGATAACGATGGGGCACCCACGAACTGTGCGGTGACGTGCGAGGGTGCCTGGTGGTACAACAACTGCCACCATTCGAATCTGAACGGTCGGTTCATGAACGCTGTGGATGTGAAGTCGATCTCGTGGTATCATTTCAAGAGCTCGCACCAGGGCATGGCTTACACTAGGATGATGATAAAGGAGGTTTAGATTGAAGCAAGTGGTGGAATAATATGTAAGATAAATAAATTAAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8525#0 CCGCGGACGCGTGGGCGGGATTGGGAGCGGCACATCACTTTGCGCGGGTTAAGATGTATT 60 consensus_8525#1 ------------------------------------------------------------ consensus_8525#0 CTCATGTGCTGTCGGTTGTGTTGTGCTGGTGTTTGTCGTTGCTGTTCGTGAGTGTGGCTG 120 consensus_8525#1 ------------------------------------------------------------ consensus_8525#0 GAAGCAATGATACAGCTACTGTTCCTGCGGAGAAGTCTACGGATCCGACCTCCACCGGGT 180 consensus_8525#1 ------------------------------------------------------------ consensus_8525#0 ACGGGTTTGAGATGATAATGGCCAAACTGGACTACCTACAGTACAAGCTGCTCGAGATGG 240 consensus_8525#1 ------------------------------------------------------------ consensus_8525#0 ACTTTGTGATGAAGGAGCACAGCGAAGGTATCGGACAGAACCAGGCCCATCTGGAGAAAG 300 consensus_8525#1 ------------------------------------------------------------ consensus_8525#0 TGTTCGGCAGCATGCTGTGGGCGATCAGTCGGTTGGATCAAGCGGTCGGCAATAATCTAA 360 consensus_8525#1 ------------------------------------------------------------ consensus_8525#0 CCGCGCTGCAGGCCCAATCCTGGAAGATACTATCCCGCCAAACCATCTGCTCCAACCACG 420 consensus_8525#1 ------------------------------------------------------------ consensus_8525#0 ACCAAATGCGGAGTGAACTGTTCAGTCTCGCGCCGAGGCAGGGCCTTGCGCCCAATGCAC 480 consensus_8525#1 ------------------------------------------------------------ consensus_8525#0 GCTCCCTGTTCGAGCTGCAGGGTATGCGGCACAAGGGCCCGTTCGAATCGTGCCGCGATG 540 consensus_8525#1 ------------------------------------------------------------ consensus_8525#0 AGCCGTCCAAGATGTCGGGCAAGTATTTGTTGCGGGCGAGCAACGACGTGGAACCGTTCC 600 consensus_8525#1 ------------------------------------------------------------ consensus_8525#0 CGGCGTACTGCGAGCAGACCAAGTTCGGCGGTGGTTGGTTGGTGATACAGCATCGGTTTA 660 consensus_8525#1 ------------------------------------------------------------ consensus_8525#0 AGGGTGCGCTCGATTTCTTCCGCAACTGGACGGAGTACCGGGATGGGTTCGGGAACGTCG 720 consensus_8525#1 -----------------CCGCGCAACTGGACGGAGTACCGCGATGGGTTCGGGAACGTCG 43 ******************** ******************* consensus_8525#0 ATCAGGAGTTTTGGATCGGGTTGGAACGGTTGCACCAGCTGACGTCGGTCAAACCGTACC 780 consensus_8525#1 ATCAGGAGTTTTGGATCGGGTTGGAACGGTTGCACCAGCTGACGTCGGTCAAACCGTACC 103 ************************************************************ consensus_8525#0 AGTTGCTGATCCAAAAAAAAAACTTTTGCCGGTGACTATCGGTACGCCCGGTACAAGGAG 840 consensus_8525#1 AGTTGCTGATCGAGGTGGAAGACTTT-GCCGGTGACTATCGGTACGCCCGGTACAAGGAG 162 *********** * ** ***** ********************************* consensus_8525#0 TTTTGAAATTGGCAGTGAGGCGGAGATGTACAGCTTGAAGAAGCTGGGCGCGTACAGCGG 900 consensus_8525#1 TTT-GAAATTGGCAGTGAGGCAGAGATGTACAGCTTGAAGAAGCTGGGCGCGTACAGCGG 221 *** ***************** ************************************** consensus_8525#0 CACTGGCGGCGACTCGCTGACGTACCACAAGGGGCACAAGTTCACGACGATGGATCGCGA 960 consensus_8525#1 CACTGGCGGCGACTCGCTGACGTACCACAAGGGGCACAAGTTCACAACGATGGATCGCGA 281 ********************************************* ************** consensus_8525#0 TAACGATGGGGCACCCACGAACTGTGCGGTGACGTGCGAGGGTGCCTGGTGGTACAACAA 1020 consensus_8525#1 TAACGATGGGGCACCCACGAACTGTGCGGTGACGTGCGAGGGTGCCTGGTGGTACAACAA 341 ************************************************************ consensus_8525#0 CTGGCACCATTCGAATCTGAACGGTCGGTTCACTGAACGCCGGTGGATGTGAAGTCGATC 1080 consensus_8525#1 CTGCCACCATTCGAATCTGAACGGTCGGTTCA-TGAACGCTG-TGGATGTGAAGTCGATC 399 *** **************************** ******* * ***************** consensus_8525#0 TCNTGGTATCATTTCAANGAGNCTCCGCCACCCACGGGCACTGGCTTACACCTAGGATGA 1140 consensus_8525#1 TCGTGGTATCATTTCAAG-AGCTCGCACCA-----GGGCA-TGGCTTACAC-TAGGATGA 451 ** ************** ** * *** ***** ********** ******** consensus_8525#0 CTGACTACCACGCGACAGCGGTTCAAGCGCTCTGAANCGCCAACNTGGTNNGCACACTAA 1200 consensus_8525#1 -TGATAA--AGGAGGTTTAGATTGAAGC------AAGTGGTGGAATAATATGTAAGATAA 502 *** * * * * * ** **** ** * * * * * *** consensus_8525#0 CTANTGTTCACCATAACATANCCCTANAAGCCACCGGTTATAAC 1244 consensus_8525#1 ATAA-ATTAAGC-------------------------------- 513 ** ** * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||