These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_853#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 603 fasta sequence [CCGGTCCGACCGGTGCTGCGCCGACTGCTGTGTTGGTGTCTCCGTAGCAGCAGGCGAGCACGACACGACAGCAAGAAACCTCCCAAAAGCAGTGCCTGCAGTGGAGTGGTTGTTAAAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGTGTTGCCAGGAAAGTGAACGCGCAAATCCCGTCTAGTCTGCAAGGGGCACAATTCACAGCGTAACGATCGGAAGGAAAGAGACGCTCGCACACACACGCACATCCAGAAACACGACGGAAGGTAATCGAATCGAATGCAAATGTCAAACGCGCTGCCGATCGTCGAGTTGCCGCACTGTCGTCACCAGCACCACCATGTCATCGAACCATGACTTCACCTTCGAATGGTCACTGCTCACGAAGAAGGACTGCGGCAAGTGGAACAGCGCCGGTCGCCCCAGTACTGTGCCCAAGAACAACCCCTGAACCGTGCAGCGCACAGCGAACCCCCGTTCGGTGTCGAACAAGGATATACACACACACGCGCGCGCATTACGCTCTCGAACGTTCCCTTGGGCCGGCGGGTCAGGCGGGTTTCCCGGGTTTTCCCCCCCCCCCCCCCGCGACTGCT] [+] EMBL BM607392 [CCGGTCCGACCGGTGCTGCGCCGACTGCTGTGTTGGTGTCTCCGTAGCAGCAGGCGAGCACGACACGACAGCAAGAAACCTCCCAAAAGCAGTGCCTGCAGTGGAGTGGTTGTTAAAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGTGTTGCCAGGAAAGTGAACGCGCAAATCCCGTCTAGTCTGCAAGGGGCACAATTCACAGCGTAACGATCGGAAGGAAAGAGACGCTCGCACACACACGCACATCCAGAAACACGACGGAAGGTAATCGAATCGAATGCAAATGTCAAACGCGCTGCCGATCGTCGAGTTGCCGCACTGTCGTCACCAGCACCACCATGTCATCGAACCATGACTTCACCTTCGAATGGTCACTGCTCACGAAGAAGGACTGCGGCAAGTGGAACAGCGCCGGTCGCCCCAGTACTGTGCCCAAGAACAACCCCTGAACCGTGCAGCGCACAGCGAACCCCCGTTCGGTGTCGAACAAGGATATACACACACACGCGCGCGCATTACGCTCTCGAACGTTCCCTTGGGCCGGCGGGTCAGGCGGGTTTCCCGGGTTTTCCCCCCCCCCCCCCCGCGACTGCT] consensusID : consensus_853#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 539 fasta sequence [ACGTCCCCTAGTCGCCATTGGGCCCCAGCGCGCTCTCGTGTTCCTGTGTGTGTGTGTGTGCGTGTTGAATTGTGTGCAGTGTTTGTGTGCGTAGTGTAAGAGGTCACCTCCAGGAAGGGCCATTAAGTTATTGTGCCAGACACACACACACACACACATACAAGTCCATAAGGGAAAAGTAGCATAAACAGCACGATCCGCATGATAAGAAGGGGCGGCCTGGAGGAGGAAATCGAAGCAGCAAGCCCCCTCTACCCGTGGACGGTGCGCCCTCGGTGGCAGGGCTGAGCACAGTCCGACCGGTGCGGCGCCGACTGCTGTGTTGGTGTCTCCGTAGCAGCAGGCGAGCACGACACGACAGCAAGAAACCTCCCAAAAGCAGTGCCTCAGTGGAGTGGTTTGTTAAAGCGAGAGAGAGAGAGAGAGAGAAAGAGTGTTGCCAGGAAAGTGAACGCGCAAATCCCGTCTAGTCTGCAAGGGGGCACAATTCACAGCTTAACATCGAAGAAAGAGACCTCCACACACACACACACGCACAT] [+] EMBL AGA281429 [ACGTCCCCTAGTCGCCATTGGGCCCCAGCGCGCTCTCGTGTTCCTGTGTGTGTGTGTGTGCGTGTTGAATTGTGTGCAGTGTTTGTGTGCGTAGTGTAAGAGGTCACCTCCAGGAAGGGCCATTAAGTTATTGTGCCAGACACACACACACACACACATACAAGTCCATAAGGGAAAAGTAGCATAAACAGCACGATCCGCATGATAAGAAGGGGCGGCCTGGAGGAGGAAATCGAAGCAGCAAGCCCCCTCTACCCGTGGACGGTGCGCCCTCGGTGGCAGGGCTGAGCACAGTCCGACCGGTGCGGCGCCGACTGCTGTGTTGGTGTCTCCGTAGCAGCAGGCGAGCACGACACGACAGCAAGAAACCTCCCAAAAGCAGTGCCTCAGTGGAGTGGTTTGTTAAAGCGAGAGAGAGAGAGAGAGAGAAAGAGTGTTGCCAGGAAAGTGAACGCGCAAATCCCGTCTAGTCTGCAAGGGGGCACAATTCACAGCTTAACATCGAAGAAAGAGACCTCCACACACACACACACGCACAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_853#0 -------CCGGTC-CGACCGGTGCTGCGCCGACTGCTGTGTTGGTGTCTCCGTAGCAGCA 52 consensus_853#1 ACGTCCCCTAGTCGCCATTGGGCCCCAGCGCGCTCTCGTGTTCCTGTGTGTGTGTGTGTG 60 * *** * * ** * ** ** ***** *** * ** * consensus_853#0 GGCG---AGCACGACACGACAGCAAGAAACCTCCCAAAAGCAGT-GCCTGCAGTGGAGTG 108 consensus_853#1 CGTGTTGAATTGTGTGCAGTGTTTGTGTGCGTAGTGTAAGAGGTCACCTCCA--GGAAGG 118 * * * * * * *** ** *** ** *** * consensus_853#0 GTTGTTAAAGCGA-GAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGTGTTGCCAGGAAAGT 167 consensus_853#1 GCCATTAAGTTATTGTGCCAGACACACACACACACACACATACAAGTCCATAAGGGAAAA 178 * **** * * *** * * * * * * * * * * * *** ** consensus_853#0 G-AACGCGCAAATCCCGTCTAGTCTGCAAGGGGCACAATTCACAGCGTAACGATCGGAAG 226 consensus_853#1 GTAGCATAAACAGCACGATCCGCATGATAAGAAGGGGCGGCCTGGAGGAGGAAATCGAAG 238 * * * * * * ** * ** * * * * * * * **** consensus_853#0 GAAAGAGACGCTCGCACACACA-----CGCACATCCAGAAACACGACGGAAGGTAATCGA 281 consensus_853#1 CAGCAAGCCCCCTCTACCCGTGGACGGTGCGCCCTCGGTGGCAGGGCTGAGCACAGTCCG 298 * ** * * ** * ** * * * ** * * ** * ** consensus_853#0 ATCGAATGCAAATGTCAAACGCGCTGCCGATCGTCGAGTTGCCGCA--CTGTCGTCAC-C 338 consensus_853#1 ACCGG-TGCGG-CGCCGACTGCTGTGTTGGTGTCTCCGTAGCAGCAGGCGAGCACGACAC 356 * ** *** * * * ** ** * * ** ** *** * * ** * consensus_853#0 AGCACCACCATGTCATCGAACCATGACTTCACCTTCGAATGGTCACTGCTCACGAAGAAG 398 consensus_853#1 GACAGCAAGAAACCTCCCAAAAGCAGTGCCTCAGTGGAGTGGTT--TGTTAAAGCGAGAG 414 ** ** * * * ** * * * ** **** ** * * * ** consensus_853#0 GACTGCGGCAAGTGGAACAGCGCCGGTCGCCCCAGTACTGTGCCCAAGAACAACCCCTGA 458 consensus_853#1 AGAGAGAGAGAGAGAAAGAGTGTTG------CCAGGAAAGTGAACGCGCAAATCCCGTCT 468 * ** * ** ** * * **** * *** * * * * *** * consensus_853#0 ACCGTGCAGCGCACAGCGAACCCCCGTTCGGTGTCGAACAAGGATATACACACACACGCG 518 consensus_853#1 AGTCTGCAAGGGGGCACAATTCACAGCTTAACATCGAAGAAAGAGACCTCCACACACACA 528 * **** * * * * * * * ***** ** ** * ******* * consensus_853#0 CGCGCATTACGCTCTCGAACGTTCCCTTGGGCCGGCGGGTCAGGCGGGTTTCCCGGGTTT 578 consensus_853#1 CACACGC-ACAT------------------------------------------------ 539 * * * ** consensus_853#0 TCCCCCCCCCCCCCCCGCGACTGCT 603 consensus_853#1 ------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||