These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8549#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 991 fasta sequence [ACGTGTTCTTCGAGGAGTGCTTCGACAAGATGGAGCGCAGCG--GACTGTCATCGCGGGCCGGCCGGCGCGACATCATCAGCCACCTGAACTCGGTCATCTCCGGCTGCATCCAGGGTCGGCAGACGGCCACGACCCAGCTGGCAGTGGGGCTGGCCGTCACGTCCGCCATCGACTACCACAACCGGATGAAGGGCGACAACTACGAGGTGTGCCTGATGGGCAAGTATCACAACGTGCTGTACATAGCGCTCCGCATCACCTGGGACTGGGGGCTGGAGGATTCAACCATCGTGCGAAATCTGCTAGATGAAATCTTCAAGTGTGAAAAGACGTTCGAGCGGCTGTTTCTGGGCGCACTGTTCGGCTGCAATGCGCCCCACTTCATCGCCGGCTGGAAGAGCGACTTCAACGATCAGGACGAGAACCTGCGTGCGGTCGTGTTCTTCCTGCACCATTCGGCGAAGGCGCGTGCCATCTATCCGACCTACTCGTACGCTTACCAGCGGCTGCGCCAGACCAAATTCATCGACGTGCCGATCGAGTCGTGCGGTAAGGCGTCGCCGCTACGCGTCGCCCTGCAGGCATCGGCACCTGACGTCGTGCTGATACTGTTGCGGCACGGTGCCAACCCGTGCCCGGACGATGGTGGCGCTAGCCCGGTGCTGAGTCTGCTGGAAAAGCTGGCCGAGTGCGAAAACCGCTGCTACCCGTTCCAGCTGGTGTCGTGCCTGAAGCTGCTGCTCCGCACGGTTCGCATGGTGGAGCTGCCGTACAAGCCGCACCTGTACGCGGTCCGCAGGGAGATGTTCCACGCTAAGTACGAGGCGCTGCTAGAGGACGGACTGCTGCCACCGGACCAGGTGTACGGTGTGCCGACGCTCAAGCACACCTGCCGCTGCCTGGTGCGGGACGTGCTGCGCGACAACTTCCAGCTGCCCGGCGGTGTGTTAAAG-TGCCGCTGCCCCGCAAAATGCAGAAATATATCGATTTG] [+] EMBL BX617091 [ACGTGTTCTTCGAGGAGTGCTTCGACAAGATGGAGCGCAGCG GGCTGTCATCGCGGGCCGGCCGGCGCGACATCATCAGCCACCTGAACTCGGTCATCTCCGGCTGCATCCAGGGTCGGCAGACGGCCACGACCCAGCTGGCAGTGGGGCTGGCCGTCACGTCCGCCATCGACTACCACAACCGGATGAAGGGCGACAACTACGAGGTGTGCCTGATGGGCAAGTATCACAACGTGCTGTACATAGCGCTCCGCATCACCTGGGACTGGGGGCTGGAGGATTCAACCATCGTGCGAAATCTGCTAGATGAAATCTTCAAGTGTGAAAAGACGTTCGAGCGGCTGTTTCTGGGCGCACTGTTCGGCTGCAATGCGCCCCACTTCATCGCCGGCTGGAAGAGCGACTTCAACGATCAGGACGAGAACCTGCGTGCGGTCGTGTTCTTCCTGCACCATTCGGCGAAGGCGCGTGCCATCTATCCGACCTACTCGTACGCTTACCAGCGGCTGCGCCAGACCAAATTCATCGACGTGCCGATCGAGTCGTGCGGTAAGGCGTCGCCGCTACGCGTCGCCCTGCAGGCATCGGCACCTGACGTCGTGCTGATACTGCTGCGGCACGGTGCCAACCCGTGCCCGGACGATGGTGGCGCTAGCCCGGTGCTGAGTCTGCTGGAAAAGCTGGCCGAGTGCGAAAACCGCTGCTACCCGTTCCAGCTGGTGTCGTGCCTGAAGCTGCTGCTCCGCACGGTTCGCATGGTGGAGCTGCCGTACAAGCCGCACCTGTACGCGGTCCGCAGGGAGATGTTCCACGCTAAGTACGAGGCGCTGCTAGAGGACGGA ] [+] EMBL CNS09AKA [ GACAAGATGGAGCGC GCGTTGACTGTCATCGCGGGCCGGCCGGCGCGACATCATCAGCCACCTGAACTCGGTCATCTCCGGCTGCATCCAGGGTCGGCAGACGGCCACGACCCAGCTGGCAGTGGGGCTGGCCGTCACGTCCGCCATCGACTACCACAGCCGGATGAAGGGCGACAACTACGAGGTGTGCCTGATGGGCAAGTATCACAACGTGCTGTACATAGCGCTCCGCATCACCTGGGACTGGGGGCTGGAGGATTCAACCATCGTGCGAAATCTGCTAGATGAAATCTTCAAGTGTGAAAAGACGTTCGAGCGGCTGTTTCTGGGCGCACTGTTCGGCTGCAATGCGCCCCACTTCATCGCCGGCTGGAAGAGCGACTTCAACGATCAGGACGAGAACCTGCGTGCGGTCGTGTTCTTCCTGCACCATTCGGCGAAGGCGCGTGCCATCTATCCGACCTACTCGTACGCTTACCAGCGGCTGCGCCAGATCAAATTCATCGACGTGCCGATCGAGTCGTGCGGTAAGGCGTCG CGCTACGCGTCGCCCTGCAGGCATCGGCACCTGACGTCGTGCTGATACTGTTGCGGCACGGTGCCAACCCGTGCCCGGACGATGGTGGCGCTA CCGGGTGCTGAGTCTGCTGGAAAAGCTGGCCGAGTGCGAAAACCGCTGCTACCCGTTCCAGCTGGTGTCGTGCCTTAAGCTGCTGCTCCGCACGGTTCGCATGGTGGAGCTGCCGTACAAGCCGCACCTGTACGCGGTCCGCAGGGAGATGTTCCACGCTAAGTACGAGGCGCTGCTAGAGGACGGACTGCTGCCACCGGACCAGGTGTAC ] [+] EMBL CNS08QZS [ GACAAGATGGAGCGGAGTG GTCTGTCATCGCGGGCCGGCCGGCGCGACATCATCAGCCACCTGAACTCGGTCATCTCCGGCTGCATCCAGGGTCGGCAGACGGCCACGACCCAGCTGGCAGTGGGGCTGGCCGTCACGTCCGCCATCGACTACCACAACCGGATGAAGGGCGACAACTACGAGGTGTGCCTGATGGGCAAGTATCACAACGTGCTGTACATAGCGCTCCGCATCACCTGGGACTGGGGGCTGGAGGATTCAACCATCGTGCGAAATCTGCTAGATGAAATCTTCAGGTGTGAAAAGACGTTCGAGCGGCTGTTTCTGGGCGCACTGTTCGGCTGCAATGCGCCCCACTTCATCGCCGGCTGGAAGAGCGACTTCAACGATCAGGACGAGAACCTGCGTGCGGTCGTGTTCTTCCTGCACCATTCGGCGAAGGCGCGTGCCATCTATCCGACCTACTCGTACGCTTACCAGCGGCTGCGCCAGAACAAATTCATCGACGTGCCGATCGAGTTGTGCGGTAAGGCGTCG CGCTACGCGTCGCCCTGCAGGCATCGGCACCTGACGTCGTGCTGATACTGTTGCG ] [+] EMBL CNS08P7N [ GACAAGATGGAGCGCAGGT GACTGTCATCGCGGGCCGGCCGGCGCGACATCATCAGCCACCTGAACTCGGTCATCTCCGGCTGCATCCAGGGTCGGCAGACGGCCACGACCCAGCTGGCAGTGGGGCTGGCCGTCACGTCCGCCATCGACTACCACAACCGGATGAAGGGCGACAACTACGAGGTGTGCCTGATGGGCAAGTATCACAACGTGCTGTACATAGCGCTCCGCATCACCTGGGACTGGGGGCTGGAGGATTCAACCATCGTGCGAAATCTGCTAGATGAAATCTTCAAGTGTGAAAAGACGTTCGAGCGGCTGTTTCT ] [-] EMBL CNS09AKB [ GGCTGGCCGTCACGTCCGCCATCAACTACCACAGCCGGATAAAGGGCGACAACTACGAGGTGTGCCTAATGGGCAAATATCACAACGTGCTGTACATAGC CTCCGCATCACCTGGGACTGGGGGCTGGAGGATTCAACCATCGTGCGAAATCTGCTAGATGAAATCTTCAAGTGTGAAAAGACGTTCGAGCGGCTGTTTCTGGGCGCACTGTTCGGCTGCAATGCGCCCCACTTCATCGCCGGCTGGAAGAGCGACTTCAACGATCAGGACGAGAACCTGCGTGCGGTCGTGTTCTTCCTGCACCATTCGGCGAAGGCGCGTGCCATCTATCCGACCAACTCGTACGCTTACCAGCG TGCGCCAGACCAAATTCATCGACGTGCCGATCGAGTCGTGCGGTAAGGCGTC CTACGCGTCGCCCTGCAGGCATCGGCACCTGACGTCGTGCTGAAACTGTTGCGGCACGGTGCCAACCCGTGCCCGGACGATGGTGGCGCTAGCCCGGTGCTGAGTCTGCTGGAAAAGCTGGCCGAGTGCGAAAACCGCTGCTACCCGTTCCAGCTGGTGTCGTGCCTGAAGCTGCTG TCCGCACGGTTCGCATGGTGGGGCTGCCGTACAAGCCGCACCTGTACGCGGTCCGCAGGGAGATGTTCCACGCTAAGTACGAGGCGCTGCTAGAGGACGAACTGCTGCCACCGGACCAGGTGTACGGTGTGCCGACGCTCAAGCACACCTGCCGCTGCCTGGTGCGGGACGTG GCGCGACAACTTCCAGCTGCCCGGCGGTGTGTTAAAG TGCCGCTGCCCCGCAAAATGCAGAAATATATCGATTTG] [+] EMBL BX626948 [ GGGCAAGTATCACAACGTGCTGTACATAGCGCTCCGCATCACCTGGGACTGGGGGCTGGAGGATTCAACCATCGTGCGAAATCTGCTAGATGAAATCTTCAAGTGTGAAAAGACGTTCGAGCGGCTGTTTCTGGGCGCACTGTTCGGCTGCAATGCGCCCCACTTCATCGCCGGCTGGAAGAGCGGCTTCAACGATCAGGACGAGAACCTGCGTGCGGTCGTGTTCTTCCTGCACCATTCGGCGAAGGCGCGTGCCATCTATCCGACCTACTCGTACGCTTACCAGCGGCTGCGCCAGACCAAATTCATCGACGTGCCGATCGAGTCGTGCGGTAAGGCGTCGCCGCTACGCGTCGCCCTGCAGGCATCGGCACCTGACGTCGTGCTGATACTGCTGCGGCACGGTGCCAACCCGTGCCCGGACGATGGTGGCGCTAGCCCGGTGCTGAGTCTGCTGGAAAAGCTGGCCGAGTGCGAAAACCGCTGCTACCCGTTCCAGCTGGTGTCGTGCCTGAAGCTGCTGCTCCGCACGGTTCGCATGGTGGAGCTGCCGTACAAGCCGCACCTGTACGCGGTCCGCAGGGAGATGTTCCACGCTAAGTACGANGCGCTGCTAGANGACGGACTGCTGCCACCGGACCAGGTGTACGGTGTGCCGACGCTGAAGCACACCTGCCGCTGCCTGGTGCGGGACGTGCTGCGCGACAAC ] [+] EMBL BX615588 [ GGATTCAACCATCGTGCGAAATCTTCTAGATGAAATCTTCAAGTGTGAAAAGACGTTCGAGCGGCTGTTTCTGGGCGCACTGTTCGGCTGCAATGCGCCCCACTTCATCGCCGGCTGGAAGAGCGACTTCAACGATCAGGACGAGAACCTGCGTGCGGTCGTGTTCTTCCTGCACCATTCGGCGAAGGCGCGTGCCATCTATCCGACCTACTCGTACGCTTACCAGCGGCTGCGCCAGACCAAATTCATCGACGTGCCGATCGAGTCGTGCGGTAAGGCGTC ] [+] EMBL BX612989 [ GTGCGGTAAGGCGTCGCCGCTACGCGTCGCCCTGCAGGCATCGGCACCTGACGTCGTGCTGATACTGCTGCGGCACGGTGCCAACCCGTGCCCGGACGATGGTGGCGCTAGCCCGGTGCTGAGTCTGCTGGAAAAGCTGGCCGAGTGCGAAAACCGCTGCTACCCGTTCCAGCTGGTGTCGTGCCTGAAGCTGCTGCTCCGCACGGTTCGCATGGTGGAGCTGCCGTACAAGCCGCACCTGTACGCGGTCCGCAGGGAGATGTTCCACGCTAAGTACTAGGCGCTGCTAGAGGACGGACTGCTGCCACCGGACCAGGTGTACGGTGTGCCGACGCTGAAGCACACCTGCCGCTGCCTGGTGCGGGACGTGCTGCGCGACAACTTCCAGCTGCCCGGCGGTGTGTTAAAGCTGCCGCTGCCCCGCAAAAT ] [-] EMBL CNS08P7O [ cgGTCGC CTACGCGTCGCCCTGCAGGCATCGGCCCCTGACGTCGTGCTGAAACTGTTGCGGCACGGTGCCAACCCGTGCCCGGACGATGGTGGCGCTAGCCCGGTGCTGAGTCTGCTGGAAAAGCTGGCCGAGTGCGAAAACCGCTGCTACCCGTTCCAGCTGGTGTCGTGCCTGAAGCTGCT CTCCGCACGGTTCGCATGGTGGGGCTGCCGTACAAGCCGCACCTGTACGCGGTCCGCAGGGAGATGTTCCACGCTAAGTACGAGGCGCTGCTAGAGGACGGACTGCTGCCACCGGACCAGGTGTACGGTGTGCCGACGCTCAAGCACACCTGCCGCTGCCTGGTGCGGGACGTct ] [-] EMBL CNS08QZT [ TGGTGGCGCTAGCCCGGTGCTGAGTTTGTTGGAAAAGCTGGCCGAGTGCGAAAACCGCTGCTACCCGTTCCCGCTGGTGTCGTGCC ] consensusID : consensus_8549#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 716 fasta sequence [GAGCAGATCGGNGACNGGNTAAACTACGAGGTGTGCTGATGGGCAAGTATCACAACGTGCTGTACATAGCGCTCCGCATCACCTGGGACTGGGGGCTGGAGGATTCAACCATCGTGCGAAATCTGCTAATGAAATCTTCAAGTGTGAAAAGACGTTCGAGCGGCTGTTTCTGGGCGCACTGTTCGGCTGCAATGCGCCCCACTTCATCGCCGGCTGGAAGAGCGACTTCAACCGATCAGGACGAGAACCTGCGTGCGGTCGTGTTCTTCCTGCACCATTCGGCGAAGGCGCGTGCCATCTATCCGACCTACTCGTACGCTTACCAGCGGCTGCGCCAGACCAAATTCATCGACGTGCCGATCGAGTCGTGCGGTAAGGCGTCGCCGCTACGCGTCGGCCCTGCAGGCATCGGCACCTGACGTCGTGCTGATACTGCTGCGGCACGGTGCCAACCCGTGCCCGGACGATGGTGGCGCTAGCCCGGTGCTGAGTCTGCTGGAAAAGCTGGCCGAGTGCGAAAACCGTGTAACCGTTCCAGCTGGTGTCGTGCCTGAAGCTGCTGCTCCGCACGGTTCGCATGGTGGAGCTGCCGTACAAGCCGACCTGTACGCGGTCCGCAGGGAGATGTTCCACGCTAAGTACCGAGGCGCTGCTAGAGGACGGACTGCTGCANCGGGACCAGGTGTACGGTGTGCCGACGGCTGAAGCACACCTGN] [+] EMBL AL696897 [GAGCAGATCGGNGACNGGNTAAACTACGAGGTGTGCTGATGGGCAAGTATCACAACGTGCTGTACATAGCGCTCCGCATCACCTGGGACTGGGGGCTGGAGGATTCAACCATCGTGCGAAATCTGCTAATGAAATCTTCAAGTGTGAAAAGACGTTCGAGCGGCTGTTTCTGGGCGCACTGTTCGGCTGCAATGCGCCCCACTTCATCGCCGGCTGGAAGAGCGACTTCAACCGATCAGGACGAGAACCTGCGTGCGGTCGTGTTCTTCCTGCACCATTCGGCGAAGGCGCGTGCCATCTATCCGACCTACTCGTACGCTTACCAGCGGCTGCGCCAGACCAAATTCATCGACGTGCCGATCGAGTCGTGCGGTAAGGCGTCGCCGCTACGCGTCGGCCCTGCAGGCATCGGCACCTGACGTCGTGCTGATACTGCTGCGGCACGGTGCCAACCCGTGCCCGGACGATGGTGGCGCTAGCCCGGTGCTGAGTCTGCTGGAAAAGCTGGCCGAGTGCGAAAACCGTGTAACCGTTCCAGCTGGTGTCGTGCCTGAAGCTGCTGCTCCGCACGGTTCGCATGGTGGAGCTGCCGTACAAGCCGACCTGTACGCGGTCCGCAGGGAGATGTTCCACGCTAAGTACCGAGGCGCTGCTAGAGGACGGACTGCTGCANCGGGACCAGGTGTACGGTGTGCCGACGGCTGAAGCACACCTGN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8549#0 ACGTGTTCTTCGAGGAGTGCTTCGACAAGATGGAGCGCAGCGGACTGTCATCGCGGGCCG 60 consensus_8549#1 ------------------------------------------------------------ consensus_8549#0 GCCGGCGCGACATCATCAGCCACCTGAACTCGGTCATCTCCGGCTGCATCCAGGGTCGGC 120 consensus_8549#1 ------------------------------------------------------------ consensus_8549#0 AGACGGCCACGACCCAGCTGGCAGTGGGGCTGGCCGTCACGTCCGCCATCGACTACCACA 180 consensus_8549#1 -------------------------------------------------------GAGCA 5 ** consensus_8549#0 ACCGGATGAAGGGCGACAACTACGAGGTGTGCCTGATGGGCAAGTATCACAACGTGCTGT 240 consensus_8549#1 GATCGGNGACNGGNTA-AACTACGAGGTGTGC-TGATGGGCAAGTATCACAACGTGCTGT 63 * ** ** * *************** *************************** consensus_8549#0 ACATAGCGCTCCGCATCACCTGGGACTGGGGGCTGGAGGATTCAACCATCGTGCGAAATC 300 consensus_8549#1 ACATAGCGCTCCGCATCACCTGGGACTGGGGGCTGGAGGATTCAACCATCGTGCGAAATC 123 ************************************************************ consensus_8549#0 TGCTAGATGAAATCTTCAAGTGTGAAAAGACGTTCGAGCGGCTGTTTCTGGGCGCACTGT 360 consensus_8549#1 TGCTA-ATGAAATCTTCAAGTGTGAAAAGACGTTCGAGCGGCTGTTTCTGGGCGCACTGT 182 ***** ****************************************************** consensus_8549#0 TCGGCTGCAATGCGCCCCACTTCATCGCCGGCTGGAAGAGCGACTTCAAC-GATCAGGAC 419 consensus_8549#1 TCGGCTGCAATGCGCCCCACTTCATCGCCGGCTGGAAGAGCGACTTCAACCGATCAGGAC 242 ************************************************** ********* consensus_8549#0 GAGAACCTGCGTGCGGTCGTGTTCTTCCTGCACCATTCGGCGAAGGCGCGTGCCATCTAT 479 consensus_8549#1 GAGAACCTGCGTGCGGTCGTGTTCTTCCTGCACCATTCGGCGAAGGCGCGTGCCATCTAT 302 ************************************************************ consensus_8549#0 CCGACCTACTCGTACGCTTACCAGCGGCTGCGCCAGACCAAATTCATCGACGTGCCGATC 539 consensus_8549#1 CCGACCTACTCGTACGCTTACCAGCGGCTGCGCCAGACCAAATTCATCGACGTGCCGATC 362 ************************************************************ consensus_8549#0 GAGTCGTGCGGTAAGGCGTCGCCGCTACGCGTCG-CCCTGCAGGCATCGGCACCTGACGT 598 consensus_8549#1 GAGTCGTGCGGTAAGGCGTCGCCGCTACGCGTCGGCCCTGCAGGCATCGGCACCTGACGT 422 ********************************** ************************* consensus_8549#0 CGTGCTGATACTGTTGCGGCACGGTGCCAACCCGTGCCCGGACGATGGTGGCGCTAGCCC 658 consensus_8549#1 CGTGCTGATACTGCTGCGGCACGGTGCCAACCCGTGCCCGGACGATGGTGGCGCTAGCCC 482 ************* ********************************************** consensus_8549#0 GGTGCTGAGTCTGCTGGAAAAGCTGGCCGAGTGCGAAAACCGCTGCTACCCGTTCCAGCT 718 consensus_8549#1 GGTGCTGAGTCTGCTGGAAAAGCTGGCCGAGTGCGAAAACCGTG--TAACCGTTCCAGCT 540 ****************************************** ** *********** consensus_8549#0 GGTGTCGTGCCTGAAGCTGCTGCTCCGCACGGTTCGCATGGTGGAGCTGCCGTACAAGCC 778 consensus_8549#1 GGTGTCGTGCCTGAAGCTGCTGCTCCGCACGGTTCGCATGGTGGAGCTGCCGTACAAGCC 600 ************************************************************ consensus_8549#0 GCACCTGTACGCGGTCCGCAGGGAGATGTTCCACGCTAAGTAC-GAGGCGCTGCTAGAGG 837 consensus_8549#1 G-ACCTGTACGCGGTCCGCAGGGAGATGTTCCACGCTAAGTACCGAGGCGCTGCTAGAGG 659 * ***************************************** **************** consensus_8549#0 ACGGACTGCTGCCACCGGACCAGGTGTACGGTGTGCCGACG-CTCAAGCACACCTGCCGC 896 consensus_8549#1 ACGGACTGCTGCANCGGGACCAGGTGTACGGTGTGCCGACGGCTGAAGCACACCTGN--- 716 ************ * ************************* ** *********** consensus_8549#0 TGCCTGGTGCGGGACGTGCTGCGCGACAACTTCCAGCTGCCCGGCGGTGTGTTAAAGTGC 956 consensus_8549#1 ------------------------------------------------------------ consensus_8549#0 CGCTGCCCCGCAAAATGCAGAAATATATCGATTTG 991 consensus_8549#1 ----------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||