These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_855#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 706 fasta sequence [TTTTTTTTTGTTCTTCACATTCAGGTGCTAGTAGTGAAATCAAAGAAACAATCAATTACCAATATAATTGTTGCCTGTTCCATCCAGATCAATGATGTTTATATCATCAGCTTATGCCATGAACTTGGTTGATTTATAGAATATGATTCCCAAAGTATGCTCCTTCGAGCCTCGGATGGCTTTCTCTAGCGCCAAGTTGAAAAGGATTCTACTCTACGGTCTAAACACTAACCACTTCCCCTACATTCTTCCTTCCATCTGCAGATACAAATCGATGACCTGCTCCCGAAGTGCATCTGTGGATCGTGCTATCTGAAGCTCGAAAGCATCGACCWGTTCGCGCTGATGGCCAGCCGCACCGAGGAAGCGTTCCGCGCCTGGCTCGGTCGTCTCCGCGGTCTCAGCAGCCCGGCCGAGGCGGCAAAAAACGTCAACGTAATGTTGCCCCTGTTTCGACTCGATCCCGACGGTGGTGCCGATTCGAAAAAGGGACACAACGCATCGGCCGCCAAAGACGCACGAAGCAATCCTTCCCCGACCGTATCGACCGCTACACCACCGGCCAGCGTCAGCCCGCCCGAGAAGGGCATCATCTCGTACAGCGATCTGAAGCTGGGGCTGCTGATTAAAGACCAAGAGCTGCTGAAGCTGATCCTGAAGGCGCTCCGGTGGGCGGAGAACGATCGCCGTGCKTCGTTCGAGGTGC] [+] EMBL AGA281436 [TTTTTTTTTGTTCTTCACATTCAGGTGCTAGTAGTGAAATCAAAGAAACAATCAATTACCAATATAATTGTTGCCTGTTCCATCCAGATCAATGATGTTTATATCATCAGCTTATGCCATGAACTTGGTTGATTTATAGAATATGATTCCCAAAGTATGCTCCTTCGAGCCTCGGATGGCTTTCTCTAGCGCCAAGTTGAAAAGGATTCTACTCTACGGTCTAAACACTAACCACTTCCCCTACATTCTTCCTTCCATCTGCAGATACAAATCGATGACCTGCTCCCGAAGTGCATCTGTGGATCGTGCTATCTGAAGCTCGAAAGCATCGACCWGTTCGCGCTGATGGCCAGCCGCACCGAGGAAGCGTTCCGCGCCTGGCTCGGTCGTCTCCGCGGTCTCAGCAGCCCGGCCGAGGCGGCAAAAAACGTCAACGTAATGTTGCCCCTGTTTCGACTCGATCCCGACGGTGGTGCCGATTCGAAAAAGGGACACAACGCATCGGCCGCCAAAGACGCACGAAGCAATCCTTCCCCGACCGTATCGACCGCTACACCACCGGCCAGCGTCAGCCCGCCCGAGAAGGGCATCATCTCGTACAGCGATCTGAAGCTGGGGCTGCTGATTAAAGACCAAGAGCTGCTGAAGCTGATCCTGAAGGCGCTCCGGTGGGCGGAGAACGATCGCCGTGCKTCGTTCGAGGTGC] consensusID : consensus_855#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence [CCGACTGAAAGGGAAAACCCTGGCCTCAACCACACACACACACACACACTCTGGGGAGCATTTCACAATCATAGCAGGCTTAAGCTGCCAAAGGGGGAGAGCAGGTCCGGAAAGGGTTTGCTCAACAGTGAAAAGTGTCAAAAAAAAGTGTGTGTGTGCGTGTAAAAGTGGTCAAACGAAAAGGGCCTTGCAACCCGGAGAAAAGCTGTAACGCAGCACGTGTGTAGAGAGGAGTGGTTGGTGTGTGATTTTTTTGCACCAGATTGTGACTTGCTTTACAACTGTTTGCGCATTTTACAATACCAACAACAAAAGAAGTACGAATGGATTCGAACAGCCTGCTGAGCATGAACCTGGCACTGAACGTGGCGCGGAAGTGTCGCATCTGCGGCATGGACATACTCGATCTCACGTGCGCCTTCCCGATCTTTGGCAACGATCGGGTGGATCAGAAACTGGAGCGCTACCTGCAGCTGAATATACAAATCGATGACCTGCTCCCGAAGTGCATCTGTGGATCGTGCTATCTGAAGCTCGAAAGCATCGACCAGTTCGCGCTGATGGCCAGCCGCACCGAGGAAGCGTTCCGCGCCTGGCTCGGTCGTCTCCGCGGTCTCAACAGCCCGGCCGAGG] [+] EMBL BM601525 [CCGACTGAAAGGGAAAACCCTGGCCTCAACCACACACACACACACACACTCTGGGGAGCATTTCACAATCATAGCAGGCTTAAGCTGCCAAAGGGGGAGAGCAGGTCCGGAAAGGGTTTGCTCAACAGTGAAAAGTGTCAAAAAAAAGTGTGTGTGTGCGTGTAAAAGTGGTCAAACGAAAAGGGCCTTGCAACCCGGAGAAAAGCTGTAACGCAGCACGTGTGTAGAGAGGAGTGGTTGGTGTGTGATTTTTTTGCACCAGATTGTGACTTGCTTTACAACTGTTTGCGCATTTTACAATACCAACAACAAAAGAAGTACGAATGGATTCGAACAGCCTGCTGAGCATGAACCTGGCACTGAACGTGGCGCGGAAGTGTCGCATCTGCGGCATGGACATACTCGATCTCACGTGCGCCTTCCCGATCTTTGGCAACGATCGGGTGGATCAGAAACTGGAGCGCTACCTGCAGCTGAATATACAAATCGATGACCTGCTCCCGAAGTGCATCTGTGGATCGTGCTATCTGAAGCTCGAAAGCATCGACCAGTTCGCGCTGATGGCCAGCCGCACCGAGGAAGCGTTCCGCGCCTGGCTCGGTCGTCTCCGCGGTCTCAACAGCCCGGCCGAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_855#0 TTTTTTTTTGTTCTTCACATTCAGGTGCTAGTAGTGAAATCAAAGAAACAATCAATTACC 60 consensus_855#1 --------CCGACTGAAAGGGAAAACCCTGGCCTC--AACCACACACACACACACACACT 50 ** * * ** * ** ** * * *** ** ** consensus_855#0 AATATAATTGTTGCCTGTTCCATCCAGATCAATGATGTTTATATCATCAGCTTATGCCAT 120 consensus_855#1 CTGGGGAGCATTTCACAATCATAGCAGGCTTAAGCTGCCAA-AGGGGGAGAGCAGGTCCG 109 * ** * ** *** * * ** * * ** * * * consensus_855#0 GAACTTGGTTGATTTATAGAATATGATTCCCAAAGTATGCTCCTTCGAGCCTCGGATGGC 180 consensus_855#1 GAAAGGGTTTGCTCAACAGTGAAAAGTGTCAAAAAAAAGTGTGTGTGTGCGTGTAAAAG- 168 *** * *** * * ** * * * *** * * * * ** * * * consensus_855#0 TTTCTCTAGCGCCAAGTTGAAAAGGATTCTACTCTACGGTCTAA-ACACTAACCACTTCC 239 consensus_855#1 -TGGTCAAACGAAAAGGGCCTTGCAACCCGGAGAAAAGCTGTAACGCAGCACGTGTGTAG 227 * ** * ** *** * * * * * *** ** * * consensus_855#0 CCTACATTCTTCCTTCC---ATCTGCAGATACAAATCGATGACCTGCTCCCGAAGTGCAT 296 consensus_855#1 AGAGGAGTGGTTGGTGTGTGATTTTTTTGCACCAGATTGTGACTTGCTTTACAACTG--T 285 * * * * ** * ** * **** **** ** ** * consensus_855#0 CTGTGGATCGTGCTATCTGAAGCTCGAAAGCATCGACCWGTTCGCGCTGATGGCCAGCCG 356 consensus_855#1 TTGCGCATTTTACAATACCAACAACAAAAGAAGT-ACGAATGGATTCGAACAGCCTGCTG 344 ** * ** * * ** ** * **** * ** * * * *** ** * consensus_855#0 CACCGAGGAAGCGTTCCGCGCCTGGCTCGGTCGTCTCCGCGGTCTCAGCAGCCCGGCCGA 416 consensus_855#1 AGCATGAACCTGGCACTGAACGTGGCGCGGAAGTGTC----GCATCTGCGGCATGGAC-- 398 * * * * * **** *** ** ** * ** ** ** ** * consensus_855#0 GGCGGCAAAAAACGTCAACGTAATGTTGCCCCTGTTTCGACTCGATCCCGACGGTGGTGC 476 consensus_855#1 ---------ATAC-TCGATCTCACGT-GCGCCT-TCCCGA-TCTTTGGCAACGATCGGGT 445 * ** ** * * * ** ** *** * *** ** * * *** * * * consensus_855#0 CGATTCGAAAAAGGGACACAACGCATCGGCCGCCAAAGACGCACGAAGCAATCCTTCCCC 536 consensus_855#1 GGATCAGAAACTGGAGCGCTAC----CTGCAGCTGAATATACAAATCGATGACCTGCTCC 501 *** **** ** * * ** * ** ** ** * ** * *** * ** consensus_855#0 GACCGTATCGACCGCTACACCACCGGCCAGCGTCAGCCCGCCCGAGAAGGGCATCATCTC 596 consensus_855#1 CGAAGTGC--ATCTGTGGATCGT--GCTATCTGAAGCTCG-------AAAGCATCGACCA 550 ** * * * * * ** * * *** ** * ***** * consensus_855#0 GTACAGCGATCTGAAGCTGGGGCTGCTGATTAAAGACCAAGAGCTGCTGAAGCTGATCCT 656 consensus_855#1 GTTC-GCG--CTGATG----GCCAGCCG--CACCGAGGAAGCGTT-CCGCGCCTGGCTCG 600 ** * *** **** * * * ** * * ** *** * * * * *** * consensus_855#0 GAAGGCGCTCCGGTGGGCGGAGAACGATCGCCGTGCKTCGTTCGAGGTGC 706 consensus_855#1 GTCGTCTCCGCGGTCTCAACAGCCCGGCCGAGG----------------- 633 * * * * **** ** ** ** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||