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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8552#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1190 fasta sequence
[AACAACATTGCTGGTG-AAACAACGAAGGCTTCCGCATCGCATCCCGCATAAATCTTGCTGAAAAAAACGGGGACTTAAATTCCGAAGCAGCTATCATGGAGATGGCAAGGAAAACGTGGGAGATGGAGAACAACATAGTCGTTCTCCCGCCGAGTGACGAGATATTTCGCTACGATGCGGAACAGCAGCAGCGCATCCTGACTGCCCGGCCCTGGGAGAAGGATCCGAACTTTTTTAAGGACATAAAAATTTCCGCCCTGGCACTGATCAAAATGGTGACGCACTCGCGCTCCGGTGGTGCGCTCGAGGTGATGGGACTGCTGCTGGGCAAGGTGGTCGACGACACGATGGTGGTGATGGACGCGTTCGCCCTACCGGTCGAGGGCACCG-AAACGCGGGTCAACGCTCAATCGCAAGCGTACGAGTACATGGCCGCGTACATCGAATCGGCCAAGGAGGTGGGCCGCATGGAGAACGCGATCGGATGGTACCACAGCCATCCCGGGTACGGTTGCTGGCTGTCCGGCATCGACGTCAACACGCAGATGCTCAACCAAAACTACCAGGAACCGTTTGTGGCGATCGTGATCGATCCGGTCAGAACCGTATCGGCCGGTAAGGTGTGTCTCGGTGCATTCCGCACCTATCCCAAAGGATACAAACCACCGAACGAAGAGCCGTCAGAGTATCAGACAA-TTCCGTTGA-GCAAAATCGAAGACTTTGGCGTGCACTGCAAGCAGTACTATCAGCTGGACGTAACGTATTTCAAGTCGGCCCTCGATCGGAAGCTGCTCGACTCGCTGTGGAACAAGTACTGGATGAATACGCTGGGCAGTTCCGGTCTGCTGAGCAACCCGGACTACACCACACGGCAAATTTTGGACCTTTCGGAAAAGCTCGAGCTTAGCGAGGCAAGCCTCGGACGGGGACAGTTCATGGCGAGCGGTTCGCTCGATCCGAACGAGAAGCGCACGGAGGATAAACTATCAAAGGCCAGCCGCGATTGTAGCCGCGCCTCGATCGAACTCATTCACGGGCTGATGGCGCAAATTTCGAAGCACAAACTGTTTAACACGATTAACACCGGCGAGGCGAAGGGTGCGGAAAATACTGCCTGAGCAAACGGCGTATTTTATATCGAAGCGATTCTGAAGGTTTGAATAAATGCTACAACCTTTGCGAACAGGCGC]
[+] EMBL CNS09GT1 [AACAACATTGCTGGTG AAACAACGAAGGCTTCCGCATCGCATCCCGGATTAATCTTGCTG AAAAAACGGGGACTTAAATTCCGAAGCAGCTATCATGGAGATGGCAAGGAAAACGTGGGAGATGGAGAACAACATAGTCGTTCTCCCGCCGAGTGACGAGATATTTCGTTACGATGCTGAACAGCAGCAGCGCATCCTGACTGCCCGGCCCTGGGAGAAGGATCCGAACTTTTTTAAGGACATAAAAATTTCCGCCCTGGCACTGATCAAAATGGTGACGCACTCGCGCTCCGGTGGTGCGCTCGAGGTGATGGGACTGCTGCTGGGCAAGGTGGTCGACGACACGATGGTGGTGATGGACGCGTTCGCCCTACCGGTCGAGGGAACCGAAAACGCGGGTCAACGCTCAATCGCAAGCGTACGAGTACATGGCCGCGTACATCGAATCGGCCAAGGAGGTGGGCCGCATGGAGAACGCGATCGGATGGTACCACAGCCATCCCGGGTACGGCTGCTGGCTGTCCGGCATCGACGTCAACACGCAGATGCTCAACCAAAACTACCAGGAACCGTTTGTGGCGATCGTGATCGATCCGGTCAGAACCGTATCGGCCGGTAAGGTGTGTCTCGGTGCATTCCGCACCTATCCCAAAGGATACAAACCACCGAACGAAGAGCCGTCAGAGTATCAGACAA TTCCGTTGAGGCAAAATCGAAGACTTTGGCGTGCACTGCAAGCAGTACTATCAGCTGGACGTAACGTATTTCAAGTCGGCCCTCGATCGGAAGCTGCTCGACTCGCTGTGGAACAAGTACTGGATGAATACGCTGGGCAGTTCCGGTCTGCTGAGCAACCCGGACTACACCACACGGCAAATTTTGGACCTTTCGGAAAAGCTCGAGCTTAGCGAGGCAAGCCTCGGACGGGGACAGTTCATGGCGAGCGGTTCGCTCGATCCGAACGAGAAGCGC ]
[+] EMBL BM594620 [ ccGGTGAAAACAACGAAGGCTTCCGCATCGCATCCCGCATAAATCTTGCTGAAAAAAACGGGGACTTAAATTCCGAAGCAGCTATCATGGAGATGGCAAGGAAAACGTGGGAGATGGAGAACAACATAGTCGTTCTCCCGCCGAGTGACGAGATATTTCGCTACGATGCGGAACAGCAGCAGCGCATCCTGACTGCCCGGCCCTGGGAGAAGGATCCGAACTTTTTTAAGGACATAAAAATTTCCGCCCTGGCACTGATCAAAATGGTGACGCACTCGCGCTCCGGTGGTGCGCTCGAGGTGATGGGACTGCTGCTGGGCAAGGTGGTCGACGACACGATGGTGGTGATGGACGCGTTCGCCCTACCGGTCGAGGGCACCG AAACGCGGGTCAACGCTCAATCGCAAGCGTACGAGTACATGGCCGCGTACATCGAATCGGCCAAGGAGGTGGGCCGCATGGAGAACGCGATCGGATGGTACCACAGCCATCCCGGGTACGGTTGCTGGCTGTCCGGCATCGACGTCAACACGCAGATGCTCAACCAAAACTACCAGGA ]
[+] EMBL BM649311 [ ccga AAACAACGAAGGCTTCCGCATCGCATCCCGCATAAATCTTGCTGAAAAAAACGGGGACTTAAATTCCGAAGCAGCTATCATGGAGATGGCAAGGAAAACGTGGGAGATGGAGAACAACATAGTCGTTCTCCCGCCGAGTGACGAGATATTTCGCTACGATGCGGAACAGCAGCAGCGCATCCTGACTGCCCGGCCCTGGGAGAAGGATCCGAACTTTTTTAAGGACATAAAAATTTCCGCCCTGGCACTGATCAAAATGGTGACGCACTCGCGCTCCGGTGGTGCGCTCGAGGTGATGGGACTGCTGCTGGGCAAGGTGGTCGACGACACGATGGTGGTGATGGACGCGTTCGCCCTACCGGTCGAGGGCACCG AAACGCGGGTCAACGCTCAATCGCAAGCGTACGAGTACATGGCCGCGTACATCGAATCGGCCAAGGAGGTGGGCCGCATGGAGAACGCGATCGGATGGTACCACAGCCATCCCGGGTACGGTTGCTGGCTGTCCGGCATCGACGTCAACACGCAGATGCTCAACCAAAACTACCAGGAACCGTTTGTGGCGATCGTGATCGATCCGGTCAGAACCGTATCGGCCGGTAAGGTGTGTCTCGGTGCATTCCGCACCTATCCCAAAGGATACAAACCACCGAACGAAGAGCCGTCAGAGTATCAGACAATTTCCGTTGA ]
[+] EMBL BM575865 [ ccgAACGAAGGCTTCCGCATCGCATCCCGCATAAATCTTGCTGAAAAAAACGGGGACTTAAATTCCGAAGCAGCTATCATGGAGATGGCAAGGAAAACGTGGGAGATGGAGAACAACATAGTCGTTCTCCCGCCGAGTGACGAGATATTTCGCTACGATGCGGAACAGCAGCAGCGCATCCTGACTGCCCGGCCCTGGGAGAAGGATCCGAACTTTTTTAAGGACATAAAAATTTCCGCCCTGGCACTGATCAAAATGGTGACGCACTCGCGCTCCGGTGGTGCGCTCGAGGTGATGGGACTGCTGCTGGGCAAGGTGGTCGACGACACGATGGTGGTGATGGACGCGTTCGCCCTACCGGTCGAGGGCACCG AAACGCGGGTCAACGCTCAATCGCAAGCGTACGAGTACATGGCCGCGTACATCGAATCGGCCAAGGAGGTGGGCCGCATGGAGAACGCGATCGGATGGTACCACAGCCATCCCGGGTACGGTTGCTGGCTGTCCGGCATCGACGTCAACACGCAGATGCTCAACCAAAACTA ]
[+] EMBL BM609103 [ ccgGGCTTCCGCATCGCATCCCGCATAAATCTTGCTGAAAAAAACGGGGACTTAAATTCCGAAGCAGCTATCATGGAGATGGCAAGGAAAACGTGGGAGATGGAGAACAACATAGTCGTTCTCCCGCCGAGTGACGAGATATTTCGCTACGATGCGGAACAGCAGCAGCGCATCCTGACTGCCCGGCCCTGGGAGAAGGATCCGAACTTTTTTAAGGACATAAAAATTTCCGCCCTGGCACTGATCAAAATGGTGACGCACTCGCGCTCCGGTGGTG ]
[+] EMBL BX617190 [ TCTTGCTG AAAAAACGGGGACTTAAATTCCGAAGCAGCTATCATGGAGATGGCAAGAAAAACGTGGGAGATGGAGAACAACATAGTCGTTCTCCCGCCGAGTGACGAGATATTTCGCTACGATGCGGAACAGCAGCAGCGCATCCTGACTGCCCGGCCCTGGGAGAAGGATCCGAACTTTTTTAAGGACATAAAAATTTCCGCCCTGGCACTGATCAAAATGGTGACGCACTCGCGCTCCGGTGGTGCGCTCGAGGTGATGGGACTGCTGCTGGGCAAGGTGGTCGACGACACGATGGTGGTGATGGACGCGTTCGCCCTACCGGTCGAGGGCACCG AAACGCGGGTCAACGCTCAATCGCAA ]
[+] EMBL BX622472 [ AACGGCGACTTAAATTCCGAAGCAGCTATCATGGAGATGGCAAGAAAAACGTGGGAGATGGAGAACAACATAGTCGTTCTCCCGCCGAGTGACGAGATATTTCGCTACGATGCGGAACAGCAGCAGCGCATCCTGACTGCCCGGCCCTGGGAGAAGGATCCGAACTTTTTTAAGGACATAAAAATTTCCGCCCTGGCACTGATCAAAATGGTGACGCACTCGCGCTCCGGTGGTGCGCTCGAGGTGATGGGACTGCTGCTGGGCAAGGTGGTCGACGACACGATGGTGGTGATGGACGCGTTCGCCCTACCGGTCGAGGGCACCG AAACGCGGGTCAACGCTCAATCGCAAGCGTACGAGTACATGGCCGCGTACATCGAATCGGCCAAGGAGGTGGGCCGCATGGAGAACGCGATCGGATGGTACCACAGCCATCCCGGGTACGGTTGCTGGCTGTCCGGCATCGACGTCAACACGCAGATGCTCAACCAAAACTACCAGGAACCGTTTGTGGCGATCGTGATCGATCCGGTCAGAACCGTATCGGCCGGTAAGGTGTGTCTCGGTGCATTCCGCACCTATCCCAAAGGATACAAACCACCGAACGAAGAGCCGTCAGAGTATCAGACAA TTCCGTTGA GCAAAATCGAAGACTTTGGCGTGCATTGCAAGCAGTACTATCAGCTGG ]
[-] EMBL CNS09GT2 [ TTTTAAGTACATAAAAATTTCCGCCCTGGCACTGATCAAAATGGTTACGAACTCGCGCTCCGGTGGTGCGCTCGAGGTGATGGAACTGCTGCTGGGCAAGGTGGTCGACGACACGATGGTGGTGATGGACGCGTTCGCCCTACCGGTCGAGGGCACCG AAACGCGGGTCAACGCTCAATCGCAAGCGTACGAGTACATGGCCGCGTACATCGAATCGGCCAAGGAGGTGGGCCGCATGGAGAACGCGATCGGATGGTACCACAGCCATCCCGGGTACGGCTGCTGGCTGTCCGGCATCGACGTCAACACGCAGATGCTCAACCAAAACTACCAGGAACCGTTTGTGGCGATCGTGATCGATCCGGTCAGAACCGTATCGGCCGGTAAGGTGTGTCTCGGTGCATTCCGCACCTATCCCAAAGGATACAAACCACCGAACGAAGAGCCGTCAGAGTATCAGACAA TTCCGTTGA GCAAAATCGAAGACTTTGGCGTGCACTGCAAGCAGTACTATCAGCTGGACGTAACGTATTTCAAGTCGGCCCTCGATCGGAAGCTGCTCGACTCTTTGTGGAACAAGTACTGGATGAATACGCTGGGCAGTTCCGGTCTGCTGAGCAACCCGGACTACACCACACGGCAAATTTTGGACCTTTCGGAAAAGCTCGAGCTTAGCGAGGCAAGCCTCGGACGGGGACAGTTCATGGCGAGCGGTTCGCTCGATCCGAACGAGAAGCGCACGGAGGATAAACTATCAAAGGCCAGCCGCGATTGTAGCCGCGCCTCGATCGAACTCATTCACGGGCTGATGGCGCAAATTTCGAAGCACAAACTGTTTAACACGATTAACACCGGCGAGGCGAAGGGTGCGGAAAATACTGCCTGAGCAAACGGCGTATTTTATATCGAAGCGATTCTGAAGGTTTGAATAAATGCTACAACCTTTGCGAACAGGCGC]
[+] EMBL BM607352 [ ccgAAAAATTTCCGCCCTGGCACTGATCAAAATGGTGACGCACTCGCGCTCCGGTGGTGCGCTCGAGGTGATGGGACTGCTGCTGGGCAAGGTGGTCGACGACACGATGGTGGTGATGGACGCGTTCGCCCTACCGGTCGAGGGCACCG AAACGCGGGTCAACGCTCAATCGCAAGCGTACGAGTACATGGCCGCGTACATCGAATCGGCCAAGGAGGTGGGCCGCATGGAGAACGCGATCGGATGGTACCACAGCCATCCCGGGTACGGCTGCTGGCTGTCCGGCATCGACGTCAACACGCAGATGCTCAACCAAAACTACCAGGAACCGTTTGTGGCGATCGTGATCGATCCGGTCAGAACCGTATCGGCCGGTAAGGTGTGTCTCGGTGCATTCCGCACCTATCCCAAAGGATACAAACCACCGAACGAAGAGCCGTCAGAGTATCAGACAA TTCCGTTGA GCAAAATCGAAGACTTTGGCGTGCACTGCAAGCAGTACTATCAGCTGGACGTAACGTATTTCAAGTCGGCCCTCGATCGGAAGCTGCTCGACTCGCTGTGGAACAAGTACTGGATGAATACGCTGGGCAGTTCCGGTCTGCTGAGCAACCCGGACTACACCACACGG ]
[+] EMBL BM596703 [ ccGATCAAAATGGTGACGCACTCGCGCTCCGGTGGTGCGCTCGAGGTGATGGGACTGCTGCTGGGCAAGGTGGTCGACGACACGATGGTGGTGATGGACGCGTTCGCCCTACCGGTCGAGGGCACCG AAACGCGGGTCAACGCTCAATCGCAAGCGTACGAGTACATGGCCGCGTACATCGAATCGGCCAAGGAGGTGGGCCGCATGGAGAACGCGATCGGATGGTACCACAGCCATCCCGGGTACGGTTGCTGGCTGTCCGGCATCGACGTCAACACGCAGATGCTCAACCAAAACTACCAGGAACCGTTTGTGGCGATCGTGATCGATCCGGTCAGAACCGTATCGGCCGGTAAGGTGTGTCTCGGTGCATTCCGCAC ]
consensusID : consensus_8552#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 480 fasta sequence
[ATCCCCGAGGTATTCGCATCGCATCCCGGATTAATCTTGCTGAAAAAACGGCGACTTAAATTCCGAAGCAGCTATCATGGAGATGGCAAGAAAAACGTGGGAGATGGAGAACAACATAGTCGTTCTCCCGCCGAGTGACGAGATATTTCGCTACGATGCGGAACAGCAGCAGCGCATCCTGACTGCCCGGCCCTGGGAGAAGGATCCGAACTTTTTTAAGGACATAAAAATTTCCGCCCCTGGCACTGATCAAAAATGGTGACGCACTCGCGCTCCGGTGGTGCGCTCGGAGGTGATGGGACTGTCTGCTGGGCAAAGGTTGTGTCTCGCGTGCATTCCGCACCTATTCCCAAAAGGATACAAACCACCGAACGAAGGAGCCCGTCAGAGTATCAGACCAAATTCCGTTGAGGCAAAAATCGAAGACTTTTTGGCGTGCATTGCCAAGCCAGTACTATCAACNCTGGGACGTAAACGTAC]
[+] EMBL AL692151 [ATCCCCGAGGTATTCGCATCGCATCCCGGATTAATCTTGCTGAAAAAACGGCGACTTAAATTCCGAAGCAGCTATCATGGAGATGGCAAGAAAAACGTGGGAGATGGAGAACAACATAGTCGTTCTCCCGCCGAGTGACGAGATATTTCGCTACGATGCGGAACAGCAGCAGCGCATCCTGACTGCCCGGCCCTGGGAGAAGGATCCGAACTTTTTTAAGGACATAAAAATTTCCGCCCCTGGCACTGATCAAAAATGGTGACGCACTCGCGCTCCGGTGGTGCGCTCGGAGGTGATGGGACTGTCTGCTGGGCAAAGGTTGTGTCTCGCGTGCATTCCGCACCTATTCCCAAAAGGATACAAACCACCGAACGAAGGAGCCCGTCAGAGTATCAGACCAAATTCCGTTGAGGCAAAAATCGAAGACTTTTTGGCGTGCATTGCCAAGCCAGTACTATCAACNCTGGGACGTAAACGTAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8552#0 AACAACATTGCTGGTGAAACAACGAAGGCTTCCGCATCGCATCCCGCATAAATCTTGCTG 60
consensus_8552#1 ------------------ATCCCCGAGGTATTCGCATCGCATCCCGGATTAATCTTGCTG 42
* * *** * ************** ** **********
consensus_8552#0 AAAAAAACGGGGACTTAAATTCCGAAGCAGCTATCATGGAGATGGCAAGGAAAACGTGGG 120
consensus_8552#1 AAAAAA-CGGCGACTTAAATTCCGAAGCAGCTATCATGGAGATGGCAAGAAAAACGTGGG 101
****** *** ************************************** **********
consensus_8552#0 AGATGGAGAACAACATAGTCGTTCTCCCGCCGAGTGACGAGATATTTCGCTACGATGCGG 180
consensus_8552#1 AGATGGAGAACAACATAGTCGTTCTCCCGCCGAGTGACGAGATATTTCGCTACGATGCGG 161
************************************************************
consensus_8552#0 AACAGCAGCAGCGCATCCTGACTGCCCGGCCCTGGGAGAAGGATCCGAACTTTTTTAAGG 240
consensus_8552#1 AACAGCAGCAGCGCATCCTGACTGCCCGGCCCTGGGAGAAGGATCCGAACTTTTTTAAGG 221
************************************************************
consensus_8552#0 ACATAAAAATTTCCGCCC-TGGCACTGATCAAAA-TGGTGACGCACTCGCGCTCCGGTGG 298
consensus_8552#1 ACATAAAAATTTCCGCCCCTGGCACTGATCAAAAATGGTGACGCACTCGCGCTCCGGTGG 281
****************** *************** *************************
consensus_8552#0 TGCGCTCG-AGGTGATGGGACTG-CTGCTGGGCAAGGTGGTCGACGACACGATGGTGGTG 356
consensus_8552#1 TGCGCTCGGAGGTGATGGGACTGTCTGCTGGGCAAAG-----------------GTTGTG 324
******** ************** *********** * ** ***
consensus_8552#0 ATGGACGCGTTCGCCCTACCGGTCGAGGGCACCGAAACGCGGGTCAACGCTCAATCGCAA 416
consensus_8552#1 TCTCGCGTGCATTCCGCACCTATTC---CCAAAAGGATACAAACCACCGAACGAAGGAGC 381
** * ** *** * ** * * ** ** * * *
consensus_8552#0 GCGTACGAGTACATGGCCGCGTACATCGAATCGGCCAAGGAGGTGGGCCGCATGGAGAAC 476
consensus_8552#1 CCGTCAGAGTATCAGACCAAATTCCGTTGA--GGCAAAAATCGAAGACTTTTTGGCGTGC 439
*** ***** * ** * * * *** ** * * * *** * *
consensus_8552#0 GCGATCGGATGGTACCACAGCCATCCCGGGTACGGTTGCTGGCTGTCCGGCATCGACGTC 536
consensus_8552#1 ATTGCCAA--GCCAGTACTATCAACNCTGGGACGTAAACGTAC----------------- 480
* * * ** ** * * ** *** * *
consensus_8552#0 AACACGCAGATGCTCAACCAAAACTACCAGGAACCGTTTGTGGCGATCGTGATCGATCCG 596
consensus_8552#1 ------------------------------------------------------------
consensus_8552#0 GTCAGAACCGTATCGGCCGGTAAGGTGTGTCTCGGTGCATTCCGCACCTATCCCAAAGGA 656
consensus_8552#1 ------------------------------------------------------------
consensus_8552#0 TACAAACCACCGAACGAAGAGCCGTCAGAGTATCAGACAATTCCGTTGAGCAAAATCGAA 716
consensus_8552#1 ------------------------------------------------------------
consensus_8552#0 GACTTTGGCGTGCACTGCAAGCAGTACTATCAGCTGGACGTAACGTATTTCAAGTCGGCC 776
consensus_8552#1 ------------------------------------------------------------
consensus_8552#0 CTCGATCGGAAGCTGCTCGACTCGCTGTGGAACAAGTACTGGATGAATACGCTGGGCAGT 836
consensus_8552#1 ------------------------------------------------------------
consensus_8552#0 TCCGGTCTGCTGAGCAACCCGGACTACACCACACGGCAAATTTTGGACCTTTCGGAAAAG 896
consensus_8552#1 ------------------------------------------------------------
consensus_8552#0 CTCGAGCTTAGCGAGGCAAGCCTCGGACGGGGACAGTTCATGGCGAGCGGTTCGCTCGAT 956
consensus_8552#1 ------------------------------------------------------------
consensus_8552#0 CCGAACGAGAAGCGCACGGAGGATAAACTATCAAAGGCCAGCCGCGATTGTAGCCGCGCC 1016
consensus_8552#1 ------------------------------------------------------------
consensus_8552#0 TCGATCGAACTCATTCACGGGCTGATGGCGCAAATTTCGAAGCACAAACTGTTTAACACG 1076
consensus_8552#1 ------------------------------------------------------------
consensus_8552#0 ATTAACACCGGCGAGGCGAAGGGTGCGGAAAATACTGCCTGAGCAAACGGCGTATTTTAT 1136
consensus_8552#1 ------------------------------------------------------------
consensus_8552#0 ATCGAAGCGATTCTGAAGGTTTGAATAAATGCTACAACCTTTGCGAACAGGCGC 1190
consensus_8552#1 ------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||