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Anopheles gambiae
cluster # 8562 cluster # 8562       Sequences # 11       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8562#0 length = 1697 sequences # 8  
consensus_8562#1 length = 1298 sequences # 2  
consensus_8562#2 length = 583 sequences # 1  

consensusID : consensus_8562#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1697
fasta sequence
                              [CCTTTAATGCATCTGCCCTTCTCATGCGCTTCACCATTCTCTCCACTCTCTCTCTCTCTCACGCGAGCTTTTAGTGTGTATAACGAGACGCGGATATTTAGGGAGAATGCAGGTACACGAAAATTATGTTCCGCGAGCGAGCGATATTAGTAATTTGTAGAATTGCTACTTGATTTTTTTTTATATATATTTTCTTATATATTTTATATTTATAGTAATATTTTTATTGCAACACACACACGCAAACATTCACACACACAAAACCACAT-AAAAAAACGTAAAGGTAATGTATAATAAAAGCGCAAAACTATTGCCGTTTTCTGAACCTCCCCGTGCGTTTGTCGGACGGTAATAGTGTATGACGTACGCAAGTCTGAGCTGAAGTTTTAAAGATTCCGCACAAGAAAAATTCACCACGAACTATAGTATATGCATCCTTTTTGGAGAGGAGCATAAGATAACTCAAGGGGAGATGTTTTGAATTTTCACGAGAAGATGACCTTTTCGCGTTTT----TGTGTGTGTGTTATGGTCGTATTTTTCGTAACTTTCTGTGCTTTGTTTCGTCTCGCTTTTTTATATTTTTCTTTCTGGGCATCACCGTGTGTCCGGTGTGAATCCGCTTTTATAGCTCGTAATTATCTCATATGACTGCAATGACGTTAACGGTTTGCAATTTAAAATAGTTCAGTTTTAGGTTAAAGTGGCGCATAGGAGAAAAGGTGTAGAACGATGGAAAGGCGAGTCCTTGTAGCTTAT-ATTCACTATCATCCTCCAACCCCACCCTTTCCCCCCGCTGTATCTGTTTTTAGTTTTTAGTGTTTCTGTCTGTGCTTTTGTAAAACGAACCGTGTACAATGTAGCAAGGTCTCTTTCTCAGTTGTGTCACTTTTGTGGACACGGTACAAGAATAGGGCGGGGACAGGTGGTTAGATATTTTGTGCGATGAAAATTGGAAACTTTTTTGTAAATGTTTATAACGAACCAGAATATGTTGAATATGTGTATGTGTCCGTATGGTTGAGATTCTTCACACGAGATTTAGTCAGTGGGATGGAGTGGCGAAGCGGAGAACTGAAAGTTAGGACGCGTTTGGTACGAGTGAAAGTACGGCCGGGAGATATTTGGGGAACGGGTTGGCAAACAGTGAAAGAATAAAAATAAAACT-GGGAGACCGCTCCTTTGCGGGACGTTTGTTGTTCCGTAGCAGGAAGACGACAACACGCTTCTCTTGACAGAGAACGAGAACGCCACCAGACGCCATCAGGAATTTTTGACGAAACATTAAAATCATAAAGCGTAAATCAAACAAAACTCATTCACTCTCGCTCACTGTCTCTCTCTCTCCCTCCCGCAAATAGGAAACAAACGGAAAAATCATTTTGAAAATTAGTGTGAACTGAAGAAGCTAATGAAATTGTAGAGCAAAATGCAAAGAATCAGAAACAAGGCGAAAAATAATCCCACAAGAGAATACCAGCCCCTCCTCCTTTTCCCNNGCCCCAAATAACAACTTTATATGAAACAAAAAATGCATACACATACTACCACGTACATTACACATTCAACCATACATCCCCATATAAATGCGTACATTTAGGCGTAAATATTTCCGGTGAACATCCAGCATTCAGTAAACCAAACATGAACGGAAAAATGAAAGGAAATAAATTGATATGAACCACGACTACAAAAAAAAA]

[+] EMBL AGA282514            [CCTTTAATGCATCTGCCCTTCTCATGCGCTTCACCATTCTCTCCACTCTCTCTCTCTCTCACGCGAGCTTTTAGTGTGTATAACGAGACGCGGATATTTAGGGAGAATGCAGGTACACGAAAATTATGTTCCGCGAGCGAGCGATATTAGTAATTTGTAGAATTGCTACTTGATTTTTTTTTATATATATTTTCTTATATATTTTATATTTATAGTAATATTTTTATTGCAACACACACACGCAAACATTCACACACACAAAACCACAT AAAAAAACGTAAAGGTAATGTATAATAAAAGCGCAAAACTATTGCCGTTTTCTGAACCTCCCCGTGCGTTTGTCGGACGGTAATAGTGTATGACGTACGCAAGTCTGAGCTGAAGTTTTAAAGATTCCGCACAAGAAAAATTCACCACGAACTATAGTATATGCATCCTTTTTGGAGAGGAGCATAAGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BX626231             [                                                                                                                                TTCCGCGAGCGAGCGATATTAGTAATTTGTAGAATTGCTACTTGATTTTTTTTTATATATATTTTCTTATATATTTTATATTTATAGTAATATTTTTATTGCAACACACACACGCAAACATTCACACACACAAAACCACAT AAAAAAACGTAAAGGTAATGTATAATAAAAGCGCAAAACTATTGCCGTTTTCTGAACCTCCCCGTGCGTTTGTCGGACGGTAATAGTGTATGACGTACGCAAGTCTGAGCTGAAGTTTTAAAGATTCCGCACAAGAAAAATTCACCACGAACTATAGTATATGCATCCTTTTTGGAGAGGAGCATAAGATAACTCAAGGGGAGATGTTTTGAGTGTTCACGAGGAGATGACCTTTTCGCGTTTTTGTGTGTGTGTGTGTTATGGTCGTATTTTTCGTAACTTTCTGTGCTTTGTTTCGTCTCGCTTTTTTATATTTTTCTTTCTGGACATCACCGTGTGTCCGGTGTGAATCCGCTTTTATAGCTCGTAATTATCTCATATGACTGCAATGACGTTAACGGTTTGCAATTTAAAATAGTTCAGTTTTAGGTTAAAGTGGCGCATAGGAGAAAAGGTGTAGAACGATGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL BM595326             [                                                                                                                                                                                                                                             ccgCGCAAACATTCACACACAAAAAACCACATCAAAAAAACGTAAAGGTAATGTATAATAAAAGCGCAAAACTATTGCCGTTTTCTGAACCTCCCCGTGCGTTTGTCGGACGGTAATAGTGTATGACGTACGCAAGTCTGAGCTGAAGTTTTAAAGATTCCGCACAAGAAAAATTCACCACGAACTATAGTATATGCATCCTTTTTGGAGAGGAGCATAAGATAACTCAAGGGGAGATGTTTTGAATTTTCACGAGAAGATGACCTTTTCGCGTTTT    TGTGTGTGTGTTATGGTCGTATTTTTCGTAACTTTCTGTGCTTTGTTTCGTCTCGCTTTTTTATATTTTTCTTTCTGGGCATCACCGTGTGTCCGGTGTGAATCCGCTTTTATAGCTCGTAATTATCTCATATGACTGCAATGACGTTAACGGTTTGCAATTTAAAATAGTTCAGTTTTAGGTTAAAGTGGCGCATAGGAGAAAAGGTGTAGAGCGATGGAAAGGCGAGTCCTTGTAGCTTATAATTCACTATCATCCTCCAACCCCACCCTTTCCCCCCGCTGTATCTGTTTTTAGTTTTTAGTGTTTCTGTCTGTGCTTTTGTAAAACGAAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BX620376             [                                                                                                                                                                                                                                                                                                                                                                                                 TTTTAAAGATTCCGCACAAGAAAAATTCACCACGAACTATAGTATATGCATCCTTTTTGGAGAGGAGCATAAGATAACTCAAGGGGAGATGTTTTGAATTTTCACGAGAAGATGACCTTTTCGCGTTTT    TGTGTGTGTGTTATGGTCGTATTTTTCGTAACTTTCTGTGCTTTGTTTCGTCTCGCTTTTTTATATTTTTCTTTCTGGGCATCACCGTGTGTCCGGTGTGAATCCGCTTTTATAGCTCGTAATTATCTCATATGACTGCAATGACGTTAACGGTTTGCAATTTAAAATAGTTCAGTTTTAGGTTAAAGTGGCGCATAGGAGAAAAGGTGTAGAGCGATGGAAAGGCGAGTCCTTGTAGCTTAT ATTCACTATCATCCTCCAACCCCACCCTTTCCCCCCGCTGTATCTGTTTTTAGTTTTTAGTGTTTCTGTCTGTGCTTTTGTAAAACGAACCGTGTACAATGTAGCAAGGTCTCTTTCTCAGTTGTGTCACTTTTGTGGACACGGTACAAGAATAGGGCGGGGACAGGTGGTTAGATATTTTGTGCGATGAAAATTGGAAACTTTTTTGTAAATGTTTATAACGAACCAGAATATGTTGAATATGTGTATGTGTCCGTATGGNTGAGATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BM605938             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ccgACCGTGTGTCCGGTGTGAATCCGCTTTTATAGCTCGTAATTATCTCATATGACTGCAATGACGTTAACGGTTTGCAATTTAAAATAGTTCAGTTTTAGGTTAAAGTGGCGCATAGGAGAAAAGGTGTAGAACGATGGAAAGGCGAGTCCTTGTAGCTTAT ATTCACTATCATCCCCCAACCCCACCCTTCCCCCCCGCTGTGTTTGTTTTTAGTTTTTAGTGTTTCTGTCTGTGCTTTTGTAAAACGAACCGTGTACAATGTAGCAAGGTCTCTTTCTCAGTTGTGTCACTTTTGTGGACACGGTACAAGAATAGGGCGGGGACAGGTGGTTAGATATTTTGTGCGATGAAAATTGGAAACTTTTTTGTAAATGTTTATAACGAACCAGAATATGTTGAATATGTGTATGTGTCCGTATGGTTGAGATTCTTCACACGAGATTTTGTCAGTGGGGTGGAGTGGCGAAGCGGAGAACTGAAAGTTAGGACGCGTTTGGTACGAGTGAAAGTACGGCCGGGAGATA TTGGGGAACGGGTTGGCAAACAGTGAAAGAATAAAAATAAAACTGGGGAGACCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL AGA280886            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GTAGCAAGGTCTCTTTCTCAGTTGTGTCACTTTTGTGGACACGGTACAAGAATAGGGCGGGGACAGGTGGTTAGATATTTTGTGCGATGAAAATTGGAAACTTTTTTGTAAATGTTTATAACGAACCAGAATATGTTGAATATGTGTATGTGTCCGTATGGTTGAGATTCTTCACACGAGATTTAGTCAGTGGGATGGAGTGGCGAAGCGGAGAACTGAAAGTTAGGACGCGTTTGGTACGAGTGAAAGTACGGCCGGGAGATATTTGGGGAACGGGTTGGCAAACAGTGAAAGAATAAAAATAAAACT GGGAGACCGCTCCTTTGCGGGACGTTTGTTGTTCCGTAGCAGGAAGACGACAACACGCTTCTCTTGACAGAGAACGAGAACGCCACCAGACGCCATCAGGAATTTTTGACGAAACATTAAAATCATAAAGCGTAAATCAAACAAAA                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AGA282950            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CGATGAAAATTGGAAACTTTTTTGTAAATGTTTATAACGAACCAGAATATGTTGAATATGTGTATGTGTCCGTATGGTTTAGATTCTTCACACGAGATTTAGTCAGTGGGATGGAGTGGCGAAGCGGAGAACTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL AGA281340            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GGAGAACTGAAAGTTAGGACGCGTTTGGTACGAGTGAAAGTACGGCCGGGAGATATTT GGGAACGGGTTGGCAAACAGTGAAAG ATTAAAATAAAACT GGGAGACCGCTCCTTTGCGGGACGTTTGTTGTTCCGTAGCAGGAAGACGACAACACGCTTCTCTTGACAGAGAACGAGAACGCCACCAGACGCCATCAGGAATTTTTGACGAAACATTAAAATCATAAAGCGTAAATCAAACAAATCTCATTCACTCTCGCTCACTGTCTCTCTCTCTCCCTCCCGCAAATAGGAAACAAACGGAAAAATCATTTTGAAAATTAGTGTGAACTGAAGAAGCTAATGAAATTGTAGAGCAAAATGCAAAGAATCAGAAACAAGGCGAAAAATAATCCCACAAGAGAATACCAGCCCCTCCTCCTTTTCCCNNGCCCCAAATAACAACTTTATATGAAACAAAAAATGCATACACATACTACCACGTACATTACACATTCAACCATACATCCCCATATAAATGCGTACATTTAGGCGTAAATATTTCCGGTGAACATCCAGCATTCAGTAAACCAAACATGAACGGAAAAATGAAAGGAAATAAATTGATATGAACCACGACTACAAAAAAAAA]


>consensus_8562#0 CCTTTAATGCATCTGCCCTTCTCATGCGCTTCACCATTCTCTCCACTCTCTCTCTCTCTC ACGCGAGCTTTTAGTGTGTATAACGAGACGCGGATATTTAGGGAGAATGCAGGTACACGA AAATTATGTTCCGCGAGCGAGCGATATTAGTAATTTGTAGAATTGCTACTTGATTTTTTT TTATATATATTTTCTTATATATTTTATATTTATAGTAATATTTTTATTGCAACACACACA CGCAAACATTCACACACACAAAACCACATAAAAAAACGTAAAGGTAATGTATAATAAAAG CGCAAAACTATTGCCGTTTTCTGAACCTCCCCGTGCGTTTGTCGGACGGTAATAGTGTAT GACGTACGCAAGTCTGAGCTGAAGTTTTAAAGATTCCGCACAAGAAAAATTCACCACGAA CTATAGTATATGCATCCTTTTTGGAGAGGAGCATAAGATAACTCAAGGGGAGATGTTTTG AATTTTCACGAGAAGATGACCTTTTCGCGTTTTTGTGTGTGTGTTATGGTCGTATTTTTC GTAACTTTCTGTGCTTTGTTTCGTCTCGCTTTTTTATATTTTTCTTTCTGGGCATCACCG TGTGTCCGGTGTGAATCCGCTTTTATAGCTCGTAATTATCTCATATGACTGCAATGACGT TAACGGTTTGCAATTTAAAATAGTTCAGTTTTAGGTTAAAGTGGCGCATAGGAGAAAAGG TGTAGAACGATGGAAAGGCGAGTCCTTGTAGCTTATATTCACTATCATCCTCCAACCCCA CCCTTTCCCCCCGCTGTATCTGTTTTTAGTTTTTAGTGTTTCTGTCTGTGCTTTTGTAAA ACGAACCGTGTACAATGTAGCAAGGTCTCTTTCTCAGTTGTGTCACTTTTGTGGACACGG TACAAGAATAGGGCGGGGACAGGTGGTTAGATATTTTGTGCGATGAAAATTGGAAACTTT TTTGTAAATGTTTATAACGAACCAGAATATGTTGAATATGTGTATGTGTCCGTATGGTTG AGATTCTTCACACGAGATTTAGTCAGTGGGATGGAGTGGCGAAGCGGAGAACTGAAAGTT AGGACGCGTTTGGTACGAGTGAAAGTACGGCCGGGAGATATTTGGGGAACGGGTTGGCAA ACAGTGAAAGAATAAAAATAAAACTGGGAGACCGCTCCTTTGCGGGACGTTTGTTGTTCC GTAGCAGGAAGACGACAACACGCTTCTCTTGACAGAGAACGAGAACGCCACCAGACGCCA TCAGGAATTTTTGACGAAACATTAAAATCATAAAGCGTAAATCAAACAAAACTCATTCAC TCTCGCTCACTGTCTCTCTCTCTCCCTCCCGCAAATAGGAAACAAACGGAAAAATCATTT TGAAAATTAGTGTGAACTGAAGAAGCTAATGAAATTGTAGAGCAAAATGCAAAGAATCAG AAACAAGGCGAAAAATAATCCCACAAGAGAATACCAGCCCCTCCTCCTTTTCCCNNGCCC CAAATAACAACTTTATATGAAACAAAAAATGCATACACATACTACCACGTACATTACACA TTCAACCATACATCCCCATATAAATGCGTACATTTAGGCGTAAATATTTCCGGTGAACAT CCAGCATTCAGTAAACCAAACATGAACGGAAAAATGAAAGGAAATAAATTGATATGAACC ACGACTACAAAAAAAAA



consensusID : consensus_8562#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1298
fasta sequence
                              [CCGCCCACGCGTCCGCCCACGCGTCCGCATTCACACACACAAAACCACATAAAAAAACGTAAAGGTAATGTATAATAAAAGCGCAAAACTATTGCCGTTTTCTGAACCTCCCCGTGCGTTTGTCGGACGGTAATAGTGTATGACGTACGCAAGTCTGAGCTGAAGTTTTAAAGATTCCGCACAAGAAAAATTCACCACGAACTATAGTATATGCATCCTTTTTGGAGAGGAGCATAAGATAACTCAAGGGGAGATGTTTTGAGTGTTCACGAGGAGATGACCTTTTCGCGTTTTTGTGTGTGTGTGTGTTATGGTCGTATTTTTCGTAACTTTCTGTGCTTTGTTTCGTCTCGCTTTTTTATATTTTTCTTTCTGGACATCACCGTGTGTCCGGTGTGAATCCGCTTTTATAGCTCGTAATTATCTCATATGACTGCAATGACGTTAACGGTTTGCAATTTAAAATAGTTCAGTTTTAGGTTAAAGTGGCGCATAGGAGAAAAGGTGTAGAACGATGGAAAGGCGAGTCCTTGTAGCTTATATTCACTATCATCCCCCAACCCCATCATGTGTTTGTTTTTAGTTTTTAAGTGGTTCTGTCTGTGCTTTTGTAAAACGAACCGTGTACAATGTAGCAAGGTCTCTTTCTCAGTTGTGTCACTTTTGTGGACACGGTACAAGAATAGGGCGGGGACAGGTGGTTAGATATTTTGTGCGATGAAAATTGGAAACTTTTTTGTAAATGTTTATAACGAACCAGAATATGTTGAATATGTGTATGTGTCCGTATGGTTGAGATTCTTCACACGAGATTTAGTCAGTGGGATGGAGTGGCGAAGCGGAGAACTGAAAGAATAAAAATAAAACTGGGAGACCGCTCCTTTGCGGGACGTTTGTTGTTCCGTAGCAGGAAGACGACAACACGCTTCTCTTGACAGAGAACGAGAACGCCACCAGACGCCATCAGGAATTTTTGACGAAACATTAAAATCATAAAGCGTAAATCAAACAAATCTCATTCACTCTCGCTCACTGTCTCTCTCTCTCCCTCCCGCAAATAGGAAACAAACGAAAAATCATTTTGAAAATTAGTGTGAACTGAAGAAGCTAATGAAATTGTAGAGCAAAATGCCAAGAATCAGAAACAAGGCGAAAAATAATCCCACAAGAGAATACCAGCCCCTCCTCCTTTTCCCCCGCCCCCCCTAAACACTTTATATGAAACAAAAAATGCATACACATACTACCACGTACATTACACATTCAACCATACATCCCCATATAAATGCGTACATTTA]

[+] EMBL BM628421             [CCGCCCACGCGTCCGCCCACGCGTCCGCATTCACACACACAAAACCACATAAAAAAACGTAAAGGTAATGTATAATAAAAGCGCAAAACTATTGCCGTTTTCTGAACCTCCCCGTGCGTTTGTCGGACGGTAATAGTGTATGACGTACGCAAGTCTGAGCTGAAGTTTTAAAGATTCCGCACAAGAAAAATTCACCACGAACTATAGTATATGCATCCTTTTTGGAGAGGAGCATAAGATAACTCAAGGGGAGATGTTTTGAGTGTTCACGAGGAGATGACCTTTTCGCGTTTTTGTGTGTGTGTGTGTTATGGTCGTATTTTTCGTAACTTTCTGTGCTTTGTTTCGTCTCGCTTTTTTATATTTTTCTTTCTGGACATCACCGTGTGTCCGGTGTGAATCCGCTTTTATAGCTCGTAATTATCTCATATGACTGCAATGACGTTAACGGTTTGCAATTTAAAATAGTTCAGTTTTAGGTTAAAGTGGCGCATAGGAGAAAAGGTGTAGAACGATGGAAAGGCGAGTCCTTGTAGCTTATATTCACTATCATCCCCCAACCCCATCATGTGTTTGTTTTTAGTTTTTAAGTGGTTCTGTCTGTGCTTTTGTAAAACGAACCGTGTACAATGTAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BX613744             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TGTAGCTTATATTCACTATCATCCCCCAACCCC TCATGTGTTTGTTTTTAGTTTTT AGTGTTTCTGTCTGTGCTTTTGTAAAACGAACCGTGTACAATGTAGCAAGGTCTCTTTCTCAGTTGTGTCACTTTTGTGGACACGGTACAAGAATAGGGCGGGGACAGGTGGTTAGATATTTTGTGCGATGAAAATTGGAAACTTTTTTGTAAATGTTTATAACGAACCAGAATATGTTGAATATGTGTATGTGTCCGTATGGTTGAGATTCTTCACACGAGATTTAGTCAGTGGGATGGAGTGGCGAAGCGGAGAACTGAAAGAATAAAAATAAAACTGGGAGACCGCTCCTTTGCGGGACGTTTGTTGTTCCGTAGCAGGAAGACGACAACACGCTTCTCTTGACAGAGAACGAGAACGCCACCAGACGCCATCAGGAATTTTTGACGAAACATTAAAATCATAAAGCGTAAATCAAACAAATCTCATTCACTCTCGCTCACTGTCTCTCTCTCTCCCTCCCGCAAATAGGAAACAAACGAAAAATCATTTTGAAAATTAGTGTGAACTGAAGAAGCTAATGAAATTGTAGAGCAAAATGCCAAGAATCAGAAACAAGGCGAAAAATAATCCCACAAGAGAATACCAGCCCCTCCTCCTTTTCCCCCGCCCCCCCTAAACACTTTATATGAAACAAAAAATGCATACACATACTACCACGTACATTACACATTCAACCATACATCCCCATATAAATGCGTACATTTA]


>consensus_8562#1 CCGCCCACGCGTCCGCCCACGCGTCCGCATTCACACACACAAAACCACATAAAAAAACGT AAAGGTAATGTATAATAAAAGCGCAAAACTATTGCCGTTTTCTGAACCTCCCCGTGCGTT TGTCGGACGGTAATAGTGTATGACGTACGCAAGTCTGAGCTGAAGTTTTAAAGATTCCGC ACAAGAAAAATTCACCACGAACTATAGTATATGCATCCTTTTTGGAGAGGAGCATAAGAT AACTCAAGGGGAGATGTTTTGAGTGTTCACGAGGAGATGACCTTTTCGCGTTTTTGTGTG TGTGTGTGTTATGGTCGTATTTTTCGTAACTTTCTGTGCTTTGTTTCGTCTCGCTTTTTT ATATTTTTCTTTCTGGACATCACCGTGTGTCCGGTGTGAATCCGCTTTTATAGCTCGTAA TTATCTCATATGACTGCAATGACGTTAACGGTTTGCAATTTAAAATAGTTCAGTTTTAGG TTAAAGTGGCGCATAGGAGAAAAGGTGTAGAACGATGGAAAGGCGAGTCCTTGTAGCTTA TATTCACTATCATCCCCCAACCCCATCATGTGTTTGTTTTTAGTTTTTAAGTGGTTCTGT CTGTGCTTTTGTAAAACGAACCGTGTACAATGTAGCAAGGTCTCTTTCTCAGTTGTGTCA CTTTTGTGGACACGGTACAAGAATAGGGCGGGGACAGGTGGTTAGATATTTTGTGCGATG AAAATTGGAAACTTTTTTGTAAATGTTTATAACGAACCAGAATATGTTGAATATGTGTAT GTGTCCGTATGGTTGAGATTCTTCACACGAGATTTAGTCAGTGGGATGGAGTGGCGAAGC GGAGAACTGAAAGAATAAAAATAAAACTGGGAGACCGCTCCTTTGCGGGACGTTTGTTGT TCCGTAGCAGGAAGACGACAACACGCTTCTCTTGACAGAGAACGAGAACGCCACCAGACG CCATCAGGAATTTTTGACGAAACATTAAAATCATAAAGCGTAAATCAAACAAATCTCATT CACTCTCGCTCACTGTCTCTCTCTCTCCCTCCCGCAAATAGGAAACAAACGAAAAATCAT TTTGAAAATTAGTGTGAACTGAAGAAGCTAATGAAATTGTAGAGCAAAATGCCAAGAATC AGAAACAAGGCGAAAAATAATCCCACAAGAGAATACCAGCCCCTCCTCCTTTTCCCCCGC CCCCCCTAAACACTTTATATGAAACAAAAAATGCATACACATACTACCACGTACATTACA CATTCAACCATACATCCCCATATAAATGCGTACATTTA



consensusID : consensus_8562#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 583
fasta sequence
                              [AGCAGAAATCGGCACGTANGTTCAGTTTTAGGTTAAAGTGGCGCATAGTGAGAAAAGGTGTAGAACGATGGAAAGGCGAGTCCTTGTAGCTTATATTCACTATCATCCCCCCAACCCCCCACCCTTCCCCCCCGTGTGTGTTTTAGTTTGTAGTGTTTCTGGTCTGTGCNTTTTGTAAAACGAACCGTGGTACAAGTGTAGCAAGGTCGTCTTTACTCAGGTTGTGTCACTTTNGTGGACACGGGTACAAGAATAGGGCGGAGGGGGACCAAGCGCGTGGGGCTNGTAGGGAACGGTAAGCNTAANNGGNCGGGCGTAGGCCGGGAAAGCTNGACGCACNANNACGGTTTCTGGGGGGAAGACACACGNNTCTTGAGGGGGTCGTAGGANTTANCNGCAGCGTTGGGCGATTCNATATAAGTTAAGCANACCANGCAAGCGANGCGCGAGNGCGGACGACNGTCACGGTTGGGGGTGTCAGGGAGAAGATAGGTTGGCTTGGGTAGAGGTTTGGTGCTCGGTCGTTACACCACGNGCGGTANAANCTTCGNGGGCGCNTTGTGAAGGGGNCATGTTGCCCGGT]

[+] EMBL BX468337             [AGCAGAAATCGGCACGTANGTTCAGTTTTAGGTTAAAGTGGCGCATAGTGAGAAAAGGTGTAGAACGATGGAAAGGCGAGTCCTTGTAGCTTATATTCACTATCATCCCCCCAACCCCCCACCCTTCCCCCCCGTGTGTGTTTTAGTTTGTAGTGTTTCTGGTCTGTGCNTTTTGTAAAACGAACCGTGGTACAAGTGTAGCAAGGTCGTCTTTACTCAGGTTGTGTCACTTTNGTGGACACGGGTACAAGAATAGGGCGGAGGGGGACCAAGCGCGTGGGGCTNGTAGGGAACGGTAAGCNTAANNGGNCGGGCGTAGGCCGGGAAAGCTNGACGCACNANNACGGTTTCTGGGGGGAAGACACACGNNTCTTGAGGGGGTCGTAGGANTTANCNGCAGCGTTGGGCGATTCNATATAAGTTAAGCANACCANGCAAGCGANGCGCGAGNGCGGACGACNGTCACGGTTGGGGGTGTCAGGGAGAAGATAGGTTGGCTTGGGTAGAGGTTTGGTGCTCGGTCGTTACACCACGNGCGGTANAANCTTCGNGGGCGCNTTGTGAAGGGGNCATGTTGCCCGGT]


>consensus_8562#2 AGCAGAAATCGGCACGTANGTTCAGTTTTAGGTTAAAGTGGCGCATAGTGAGAAAAGGTG TAGAACGATGGAAAGGCGAGTCCTTGTAGCTTATATTCACTATCATCCCCCCAACCCCCC ACCCTTCCCCCCCGTGTGTGTTTTAGTTTGTAGTGTTTCTGGTCTGTGCNTTTTGTAAAA CGAACCGTGGTACAAGTGTAGCAAGGTCGTCTTTACTCAGGTTGTGTCACTTTNGTGGAC ACGGGTACAAGAATAGGGCGGAGGGGGACCAAGCGCGTGGGGCTNGTAGGGAACGGTAAG CNTAANNGGNCGGGCGTAGGCCGGGAAAGCTNGACGCACNANNACGGTTTCTGGGGGGAA GACACACGNNTCTTGAGGGGGTCGTAGGANTTANCNGCAGCGTTGGGCGATTCNATATAA GTTAAGCANACCANGCAAGCGANGCGCGAGNGCGGACGACNGTCACGGTTGGGGGTGTCA GGGAGAAGATAGGTTGGCTTGGGTAGAGGTTTGGTGCTCGGTCGTTACACCACGNGCGGT ANAANCTTCGNGGGCGCNTTGTGAAGGGGNCATGTTGCCCGGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8562#0      CCTTTAATGCATCTGCCCTTCTCATGCGCTTCACCATTCTCTCCACTCTCTCTCTCTCTC 60
consensus_8562#1      ------------------------------------------------------------
consensus_8562#2      ------------------------------------------------------------
                                                                                  

consensus_8562#0      ACGCGAGCTTTTAGTGTGTATAACGAGACGCGGATATTTAGGGAGAATGCAGGTACACGA 120
consensus_8562#1      ------------------------------------------------------------
consensus_8562#2      ------------------------------------------------------------
                                                                                  

consensus_8562#0      AAATTATGTTCCGCGAGCGAGCGATATTAGTAATTTGTAGAATTGCTACTTGATTTTTTT 180
consensus_8562#1      ------------------------------------------------------------
consensus_8562#2      ------------------------------------------------------------
                                                                                  

consensus_8562#0      TTATATATATTTTCTTATATATTTTATATTTATAGTAATATTTTTATTGCAACACACACA 240
consensus_8562#1      ---------------------------------------CCGCCCACGCGTCCGCCCACG 21
consensus_8562#2      ------------------------------------------------------------
                                                                                  

consensus_8562#0      CGCAAACATTCACACACACAAAACCACATAAAAAAACGTAAAGGTAATGTATAATAAAAG 300
consensus_8562#1      CGTCCGCATTCACACACACAAAACCACATAAAAAAACGTAAAGGTAATGTATAATAAAAG 81
consensus_8562#2      ------------------------------------------------------------
                                                                                  

consensus_8562#0      CGCAAAACTATTGCCGTTTTCTGAACCTCCCCGTGCGTTTGTCGGACGGTAATAGTGTAT 360
consensus_8562#1      CGCAAAACTATTGCCGTTTTCTGAACCTCCCCGTGCGTTTGTCGGACGGTAATAGTGTAT 141
consensus_8562#2      ------------------------------------------------------------
                                                                                  

consensus_8562#0      GACGTACGCAAGTCTGAGCTGAAGTTTTAAAGATTCCGCACAAGAAAAATTCACCACGAA 420
consensus_8562#1      GACGTACGCAAGTCTGAGCTGAAGTTTTAAAGATTCCGCACAAGAAAAATTCACCACGAA 201
consensus_8562#2      ------------------------------------------------------------
                                                                                  

consensus_8562#0      CTATAGTATATGCATCCTTTTTGGAGAGGAGCATAAGATAACTCAAGGGGAGATGTTTTG 480
consensus_8562#1      CTATAGTATATGCATCCTTTTTGGAGAGGAGCATAAGATAACTCAAGGGGAGATGTTTTG 261
consensus_8562#2      ------------------------------------------------------------
                                                                                  

consensus_8562#0      AATTTTCACGAGAAGATGACCTTTTCGCGTTTTTGTGTGTGTGT----TATGGTCGTATT 536
consensus_8562#1      AGTGTTCACGAGGAGATGACCTTTTCGCGTTTTTGTGTGTGTGTGTGTTATGGTCGTATT 321
consensus_8562#2      ------------------------------------------------------------
                                                                                  

consensus_8562#0      TTTCGTAACTTTCTGTGCTTTGTTTCGTCTCGCTTTTTTATATTTTTCTTTCTGGGCATC 596
consensus_8562#1      TTTCGTAACTTTCTGTGCTTTGTTTCGTCTCGCTTTTTTATATTTTTCTTTCTGGACATC 381
consensus_8562#2      ------------------------------------------------------------
                                                                                  

consensus_8562#0      ACCGTGTGTCCGGTGTGAATCCGCTTTTATAGCTCGTAATTATCTCATATGACTGCAATG 656
consensus_8562#1      ACCGTGTGTCCGGTGTGAATCCGCTTTTATAGCTCGTAATTATCTCATATGACTGCAATG 441
consensus_8562#2      ------------------------------------------------------------
                                                                                  

consensus_8562#0      ACGTTAACGGTTTGCAATTTAAAATAGTTCAGTTTTAGGTTAAAGTGGCGCATAG-GAGA 715
consensus_8562#1      ACGTTAACGGTTTGCAATTTAAAATAGTTCAGTTTTAGGTTAAAGTGGCGCATAG-GAGA 500
consensus_8562#2      -----AGCAGAAATCGGCACGTAN--GTTCAGTTTTAGGTTAAAGTGGCGCATAGTGAGA 53
                           * * *    *       *   ***************************** ****

consensus_8562#0      AAAGGTGTAGAACGATGGAAAGGCGAGTCCTTGTAGCTTATATTCACTATCATCCTCCAA 775
consensus_8562#1      AAAGGTGTAGAACGATGGAAAGGCGAGTCCTTGTAGCTTATATTCACTATCATCCCCCAA 560
consensus_8562#2      AAAGGTGTAGAACGATGGAAAGGCGAGTCCTTGTAGCTTATATTCACTATCATCCCCCCA 113
                      ******************************************************* ** *

consensus_8562#0      CCCCACCCTTTCCCCCCGCTGTATCTGTTTTTAGTTTTTA-GTGTTTCTG-TCTGTGCTT 833
consensus_8562#1      CCCCATCAT-----------GTGTTTGTTTTTAGTTTTTAAGTGGTTCTG-TCTGTGCTT 608
consensus_8562#2      ACCCCCCACCCTTCCCCCCCGTGTGTGTTTT-AGTTTGTA-GTGTTTCTGGTCTGTGCNT 171
                       ***  *             ** * ****** ***** ** *** ***** ******* *

consensus_8562#0      TT-GTAAAACGAACCGTG-TACAA-TGTAGCAAGGTC-TCTTT-CTCAG-TTGTGTCACT 887
consensus_8562#1      TT-GTAAAACGAACCGTG-TACAA-TGTAGCAAGGTC-TCTTT-CTCAG-TTGTGTCACT 662
consensus_8562#2      TTTGTAAAACGAACCGTGGTACAAGTGTAGCAAGGTCGTCTTTACTCAGGTTGTGTCACT 231
                      ** *************** ***** ************ ***** ***** **********

consensus_8562#0      TTTGTGGACACGG-TACAAGAATAGGGCGGGGACAGGTGGTTAGATATTTTGTGCGAT-- 944
consensus_8562#1      TTTGTGGACACGG-TACAAGAATAGGGCGGGGACAGGTGGTTAGATATTTTGTGCGAT-- 719
consensus_8562#2      TTNGTGGACACGGGTACAAGAATAGGGCGGAG---GGGGACCAAGCGCGTGGGGCTNGTA 288
                      ** ********** **************** *   ** *   *      * * **     

consensus_8562#0      GAAAATTGGAAACTTTTTTGTAAATGTTTATAACGAACCAGAATATGTTGAATATGTGTA 1004
consensus_8562#1      GAAAATTGGAAACTTTTTTGTAAATGTTTATAACGAACCAGAATATGTTGAATATGTGTA 779
consensus_8562#2      GGGAACGGTAAGCNTAANNGGNCGGGCGTAGGCCGGG--AAAGCTNGACGCACNANNACG 346
                      *  **  * ** * *    *     *  **   **    * *    *  * *        

consensus_8562#0      TGTGTCCGTATGGTTGAGATTCTTCACACGAGATTTAGTCAGTGGGATGGAGTGGCGAAG 1064
consensus_8562#1      TGTGTCCGTATGGTTGAGATTCTTCACACGAGATTTAGTCAGTGGGATGGAGTGGCGAAG 839
consensus_8562#2      -GTTTCTGGGGGGAAGACACACGNNTCTTGAGG---GGGTCGTAGGANTTANCNGCAGCG 402
                       ** ** *   **  ** *  *    *  ***     *   ** ***   *   **   *

consensus_8562#0      CGGAGAACTGAAAGTTAGGACGCGTTTGGTACGAGTGAAAGTACGGCCGGGAGATATTTG 1124
consensus_8562#1      CGGAGAACTGAAAG---------------------------------------------- 853
consensus_8562#2      TTGGGCGATTCNATAT-------------------------------------------- 418
                        * *   *   *                                               

consensus_8562#0      GGGAACGGGTTGGCAAACAGTGAAAGAATAAAAATAAAACTGGGAGACCGCTCCTTTGCG 1184
consensus_8562#1      --------------------------AATAAAAATAAAACTGGGAGACCGCTCCTTTGCG 887
consensus_8562#2      --------------------------AAGTTAAGCANACCANGCAAGCGANGCGCGAGNG 452
                                                **   **  * * *  * *  *    *    * *

consensus_8562#0      -GGACGTTTGTTGT--TCCGTAGCAGGAAGACGACAACACGCTTCTCTTGACAGAGAACG 1241
consensus_8562#1      -GGACGTTTGTTGT--TCCGTAGCAGGAAGACGACAACACGCTTCTCTTGACAGAGAACG 944
consensus_8562#2      CGGACGACNGTCACGGTTGGGGGTGTCAGGGAGAAGATAGGTTGGCTTGGGTAGAGGTTT 512
                       *****   **     *  *  *    * *  **  * * * *    * *  ****    

consensus_8562#0      AGAACGCCACCAG-ACGCCATCAGGAATTTTTGACGAAACATTAAAATCATAAAGCGTAA 1300
consensus_8562#1      AGAACGCCACCAG-ACGCCATCAGGAATTTTTGACGAAACATTAAAATCATAAAGCGTAA 1003
consensus_8562#2      GGTGCTCGGTCGTTACACCACGNGCGGTAN------AANCTTCGNGGGCGCNTTGTGAAG 566
                       *  * *   *   ** ***   *   *        ** * *      *     * * * 

consensus_8562#0      ATCAAACAAAACTCATTCACTCTCGCTCACTGTCTCTCTCTCTCCCTCCCGCAAATAGGA 1360
consensus_8562#1      ATCAAACAAATCTCATTCACTCTCGCTCACTGTCTCTCTCTCTCCCTCCCGCAAATAGGA 1063
consensus_8562#2      GGGNCATGTTGCCCGGT------------------------------------------- 583
                           *     * *  *                                           

consensus_8562#0      AACAAACGGAAAAATCATTTTGAAAATTAGTGTGAACTGAAGAAGCTAATGAAATTGTAG 1420
consensus_8562#1      AACAAACG-AAAAATCATTTTGAAAATTAGTGTGAACTGAAGAAGCTAATGAAATTGTAG 1122
consensus_8562#2      ------------------------------------------------------------
                                                                                  

consensus_8562#0      AGCAAAATGCAAAGAATCAGAAACAAGGCGAAAAATAATCCCACAAGAGAATACCAGCCC 1480
consensus_8562#1      AGCAAAATGCCAAGAATCAGAAACAAGGCGAAAAATAATCCCACAAGAGAATACCAGCCC 1182
consensus_8562#2      ------------------------------------------------------------
                                                                                  

consensus_8562#0      CTCCTCCTTTTCCCNNGCCCCAAATAACAACTTTATATGAAACAAAAAATGCATACACAT 1540
consensus_8562#1      CTCCTCCTTTTCCCCCGCCCCCCCTAAACACTTTATATGAAACAAAAAATGCATACACAT 1242
consensus_8562#2      ------------------------------------------------------------
                                                                                  

consensus_8562#0      ACTACCACGTACATTACACATTCAACCATACATCCCCATATAAATGCGTACATTTAGGCG 1600
consensus_8562#1      ACTACCACGTACATTACACATTCAACCATACATCCCCATATAAATGCGTACATTTA---- 1298
consensus_8562#2      ------------------------------------------------------------
                                                                                  

consensus_8562#0      TAAATATTTCCGGTGAACATCCAGCATTCAGTAAACCAAACATGAACGGAAAAATGAAAG 1660
consensus_8562#1      ------------------------------------------------------------
consensus_8562#2      ------------------------------------------------------------
                                                                                  

consensus_8562#0      GAAATAAATTGATATGAACCACGACTACAAAAAAAAA 1697
consensus_8562#1      -------------------------------------
consensus_8562#2      -------------------------------------
                                                           




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)