These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8578#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 706 fasta sequence [CCGCCAGCATGAACGGTGTGAGTTTGTTTACTTGAGTCTGGTTGCACGAAACATAATTGTACGTAGAGTTTGTTTCAAAATGAGGTACGGACAGCTCGTAATGGGCCCCGCCGGAAGTGGCAAGTCCACCTATTGCGCGACAATGCAACGGCACGGCTTCGATGACAAGCGGATGATCAAGGTCGTCAATCTGGATCCGGCTGCGGAACACTTTGACTATCAGCCGTTTCTAGACATCCGAGATCTGATCCAGCTGGACGATGCCATGGAAGACGAAGAGCTTCGCTACGGTCCGAATGGTGGGCTGATATTTTGTATTGAATATCTCATCGAACACTCCGACTGGCTGCGTGATCAGCTGTGTGGAGTCGGTTCCGATGATGAGGACGATACCACCGGCATCGAAGAACCGGACGACGATTATGTGCTGTTCGATATGCCGGGTCAAATCGAACTCTACACCCATCTGAAAGCGGGCAATTCGTTGGCTCGGTTACTAGAATCGTGGAACTTTCGACTCTGCTCCGTGTTCCTGGTCGACTCGCAGTTTATGATTGACGGTGCCAAGTTTTTGTCGGGAACGATGGCTGCATTGAGCGTGATGGCCAACATGGAGCTTCCCCACGTGAACGTGCTTAGTAAAATGGATCTGCTGAGCAAAGTACACCGTGGGCAGATGGACAAATATCTCGACCCTGATGCGCAC] [+] EMBL BM643762 [CCGCGAGCATGAACGGTGTGAGTTTGTTTACTTGAGTCTGGTTGCACGAAACATAATTGTACGTAGAGTTTGTTTCAAAATGAGGTACGGACAGCTCGTAATGGGCCCCGCCGGAAGTGGCAAGTCCACCTATTGCGCGACAATGCAACGGCACGGCTTCGATGACAAGCGGATGATCAAGGTCGTCAATCTGGATCCGGCTGCGGAACACTTTGACTATCAGCCGTTTCTAGACATCCGAGATCTGATCCAGCTGGACGATGCCATGGAAGACGAAGAGCTTCGCTACGGTCCGAATGGTGGGCTGATATTTTGTATTGAATATCTCATCGAACACTCCGACTGGCTGCGTGATCAGCTGTGTGGAGTCGGTTCCGATGATGAGGACGATACCACCGGCATCGAAGAACCGGACGACGATTATGTGCTGTTCGATATGCCGGGTCAAATCGAACTCTACACCCATCTGAAATCGGGCAATTCGTTGGCTCGGTTACTAGAATCGTGGAACTTTCGACTC ] [+] EMBL BM615507 [ CCGGCATGAACGGTGTGAGTTTGTTTACTTGAGTCTGGTTGCACGAAACATAATTGTACGTAGAGTTTGTTTCAAAATGAGGTACGGACAGCTCGTAATGGGCCCCGCCGGAAGTGGCAAGTCCACTTATTGCGCGACAATGCAACGGCACGGCTTCGATGACAAGCGGGTGATCAAGGTGGTCAATCTGGATCCGGCAGCGGAACACTTTGACTATCAGCCGTTTCTAGACATCCGAGATCTGATCCAGCTGGACGATGCCATGGAAGACGAAGAGCTTCGCTACGGTCCGAATGGTGGGCTGATATTTTGTCTTGAATATCTCATCGAACACTCCGACTGGCTGCGTGATCAGCTGTGTGGAGTCGGTTCCGATGACGAGGACGATACCACCGGCATCGAAGAACCGGACGACGATTATGTGCTGTTCGATATGCCGGGTCAAATCGAACTTTACACCCATCTGAAAGCGGGCAATTCGTTGGCTCGGTTACTAGAATCGTGGAACTTTCGACTCTGCTCCGTGTTCCTGGTCGACTCGCAGTTTATGATTGACGGTGCCAAGTTTTTGTCGGGAACGATGGCTGCATTGAGCGTGATGGCCAACATGGAGCTTCCCCACGTGAACGTGCTTAGTAAAATGGATCTGCTGAGCAAAGTACACCGTGGGCAGATGGACAAATATCTCGA ] [+] EMBL BM608482 [ ccGCATGAACGGTGTGAGTTTGTTTACTTGAGTCTGGTTGCACGAAACATAATTGTACGTAGAGTTTGTTTCAAAATGAGGTACGGACAGCTCGTAATGGGCCCCGCCGGAAGTGGCAAGTCCACCTATTGCGCGACAATGCAACGGCACGGCTTCGATGACAAGCGGATGATCAAGGTCGTCAATCTGGATCCGGCTGCGGAACACTTTGACTATCAGCCGTTTCTAGACATCCGAGATCTGATCCAGCTGGACGATGCCATGGAAGACGAAGAGCTTCGCTACGGTCCGAATGGTGGGCTGATATTTTGTATTGAATATCTCATCGAACACTCCGACTGGCTGCGTGATCAGCTGTGTGGAGTCGGTTCCGATGATGAGGACGATACCACCGGCATCGAAGAACCGGACGACGATTATGTGCTGTTCGATATGCCGGGTCAAATCGAACTCTACACCCATCTGAAATCGGGCAATTCGTTGGCTCGGTTACTAGAATCGTGGAACTTTCGACTCTGCTCCGTGTTCCTGGTCGACTCGCAGTTTATGATTGACGGTGCCAAGTTTTTGTCGGGAACGATGGCTGCATTGAGCGTGATGGCCAACATGGAGCTTCCCCACGTGAACGTGCTTAGTAAAATGGATCTGCTGAGCAAAGTACACCGTGGGCAGATGGACAAATATCTCGA ] [+] EMBL BX624049 [ TGTTTACTTGAGTCTGGTTGCACGAAACATAATTGTACGTAGAGTTTGTTTCAAAATGAGGTACGGACAGCTCGTAATGGGCCCCGCCGGAAGTGGCAAGTCCACCTATTGCGCGACAATGCAACGGCACGGCTTCGATNACAAGCGGATGATCAAGGTCGTCAATCTGGATCCGGCTGCGGAACACTTTGACTATCAGCCGTTTCTAGACATCCGAGATCTGATCCAGCTGGACGATGCCATGGAAGACGAAGAGCTTCGCTACGGTCCGAATGGTGGGCTGATATTTTGTATTGAATATCTCATCGAACACTCCGACTGGCTGCGTGATCAGCTGTGTGGAGTCGGTTCCGATGATGAGGACGATACCACCGGCATCGAAGAACCGGACGACGATTATGTGCTGTTCGATATGCCGGGTCAAATCGAACTCTACACCCATCTGAAATCGGGCAATTCGTTGGCTCGGTTACTAGAATCGTGG ] [+] EMBL BX622180 [ AACATAATTGTACGTAGAGTTTGTTTCAAAATGAGGTACGGACAGCTCGTAATGGGCCCCGCCGGAAGTGGCAAGTCCACCTATTGCGCGACAATGCAACGGCACGGCTTCGATGACAAGCGGATGATCAAGGTCGTCAATCTGGATCCGGCAGCGGAACACTTTGACTATCAGCCGTTTCTAGACATCCGAGATCTGATCCAGCTGGACGATGCCATGGAAGACGAAGAGCTTCGCTACGGTCCGAATGGTGGGCTGATATTTT TCTTGAATATCTCATCGAACACTCCGACTGGCTGCGTGATCAGCTGTGTGGAGTCGGTTCCGATGATGAGGACGATACCACCGGCATCGAAGAACCGGACGACGATTATGTGCTGTTCGATATGCCGGGTCAAATCGAACTTTACACCCATCTGAAAGCGGGCAATTCGTTGGCTCGGTTACTAGAATCGTGGAACTTTCGACTCTGCTCCGTGTTCCTGGTCGACTCGCAGTTTATGATTGACGGTGCCAAGTTTTTGTCGGGAACGATGGCTGCATTGAGCGTGATGGCCAACATGGAGCTTCCCCACGTGAACGTGCTTAGTAAAATGGATC ] [+] EMBL BX614036 [ AATTGTACGTAGAGTTTGTTTCAAAATGAGGTACGGACAGCTCGTAATGGGCCCCGCCGGAAGTGGCAAGTCCACTTATTGCGCG AATGCAACGGCACGGCTTCGATGACAAGCGGGTGATCAAGGTGGTCAATCTGGATCCGGCAGCGGAACACTTTGACTATCAGCCGTTTCTAGACATCCGAGATCTGATCCAGCTGGACGATGCCATGGAAGACGAAGAGCTTCGCTACGGTCCGAATGGTGGGCTGATATTTTGTCTTGAATATCTCATCGAACACTCCGACTGGCTGCGTGATCAGCTGTGTGGAGTCGGTTCCGATGACGAGGACGATACCACCGGCATCGAAGAACCGGACGACGATTATGTGCTGTTCGATATGCCGGGTCAAATCGAACTTTACACCCATCTGAAAGCGGGCAATTCGTTGGCTCGGTTACTAGAATCGTGGAACTTTCTACTCTGCTCCGTGTTCCTGGTCGACTCGCAGTTTATGATTGACGGTGCCAAGTTTTTGTCGGGAACGATGGCTGCATTGAGCGTGATGGCCAACATGGAGCTTCCCCACGTGAACGTGCTTAGTAAAATGGATCTGCTGAGCAAAGTACACCGTGGGCAGATGGACAAATATCTCGACCCTGATGCGCAC] [+] EMBL BX627504 [ GACAGCTCGTAATGGGCCCCGCCGGAAGTGGCAAGTCCACCTATTGCGCGACAATGCAACGGCACGGCTTCGATGACAAGCGGATGATCAAGGTCGTCAATCTGGATCCGGCAGCGGAACACTTTGACTATCAGCCGTTTCTAGACATCCGAGATCTGATCCAGCTGGACGATGCCATGGAAGACNAAGAGCTTCNCTACGGTCCGAATGGTGGGCTGATATTTTGTCTTGAATATCTCATCGAACACTCCGACTGGCTGCGTGATCAGCTGTGTGGAGTCGGTTCCGATGATGAGGACGATACCACCGGCATCGAAGAACCGGACGACGATTATGTGCTGTTCGATATGCCGGGTCAAATCGAACTTTACACCCATCTGAAAGCGGGCAATTCGTTGGCTCGGNTACTAGAATCGTGGAACTTTCGACTCTGCTCCGTGTTCCTGGT ] [+] EMBL BM591881 [ CCCGCCGGAAGTGGCAAGTCCACCTATTGCGCGACAATGCAACGGCACGGCTTCGATGACAAGCGGATGATCAAGGTCGCCAATCTGGATCCGGCTGCGGAACACTTTGACTATCAGCCGCTTCTACACATCCGAGATCTGATCCAGCTGGACGATGCCATGGAACACTAAGAGCTTCGCTACGGTCCGAATGGTGGGCTGATATTTTGCATTGAATATCTCATCTAACACTCCGACTGGCTGCGTGATCAGCTGTGTGGAGTCGGTTCCGATGATGAGGACGATACCACCGGCATCGAAGAACCGGACGACGATTATGTGCTGTTCGATATGCCGGGCCAAATCGAACTCTACACC ] [+] EMBL BX604027 [ TCCACCTATTGCGCGACAGTGCAACGGCACGGCTTCGATGACAAGCGGATGATCAAGGTCGTCAATCTGGATCCGGCTGCGGAACACTTTGACTATCAGCCGTTTCTGGACATCCGAGATCTGATCCAGCTGGACGATGCCATGGAAGACGA ] consensusID : consensus_8578#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 665 fasta sequence [GCCCGAGGTTAATCTGGTTGCACGAAACATAATTGTACGTAGAGTTTGTTTCAAAATGAGGTACGGACAGCTCGTAATGGGCCCCGCCGGAAGTGGCAAGTCCACCTATTGCGCGACAATGCAACGGCACGGCTTCGATGACAATGCGGATGATCAAGGTCGTCAATCTGGATCCGGCTGCGGAACACTTTGACTATCAGCCGTTTCTAGACATCCGAGATCTGATCCAGCTGGACGATGCCATGGAAGACGAAGAGCTTCGCTACGGTCCGAATGGTGGGCTGATATTTGTATTGAATATCTCATCGAACACTCCGACTGGCTGCGTGATCAGCTGTGTGGAGTCGGTTCCGATGATGAGGACGATACCACCGGCATCGAAGAACCGGACGACGATTATGTGCTGTTCGATATGCCGGGTCAAATCGAACTCTACACCCATCTGAAATCGGGCAATTCGTTGTGCTCGGTTACTAGAATCGTGGAACTTTCGACTCTGCTCCGTGTTCCTGGTCGACTCGCAGTTTATGATTGACGGTGCCAAGTTCAAGTCGGGAACGATGGCTGCATTGAGCGTGATGGCCAACATGGAGCTTCCCCACGTGAACGTGCTTAGTAAAATGGATCTGCTGANGCCAACGTACACCGTGGGCAGCATGGACAAA] [+] EMBL AL693424 [GCCCGAGGTTAATCTGGTTGCACGAAACATAATTGTACGTAGAGTTTGTTTCAAAATGAGGTACGGACAGCTCGTAATGGGCCCCGCCGGAAGTGGCAAGTCCACCTATTGCGCGACAATGCAACGGCACGGCTTCGATGACAATGCGGATGATCAAGGTCGTCAATCTGGATCCGGCTGCGGAACACTTTGACTATCAGCCGTTTCTAGACATCCGAGATCTGATCCAGCTGGACGATGCCATGGAAGACGAAGAGCTTCGCTACGGTCCGAATGGTGGGCTGATATTTGTATTGAATATCTCATCGAACACTCCGACTGGCTGCGTGATCAGCTGTGTGGAGTCGGTTCCGATGATGAGGACGATACCACCGGCATCGAAGAACCGGACGACGATTATGTGCTGTTCGATATGCCGGGTCAAATCGAACTCTACACCCATCTGAAATCGGGCAATTCGTTGTGCTCGGTTACTAGAATCGTGGAACTTTCGACTCTGCTCCGTGTTCCTGGTCGACTCGCAGTTTATGATTGACGGTGCCAAGTTCAAGTCGGGAACGATGGCTGCATTGAGCGTGATGGCCAACATGGAGCTTCCCCACGTGAACGTGCTTAGTAAAATGGATCTGCTGANGCCAACGTACACCGTGGGCAGCATGGACAAA] consensusID : consensus_8578#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 660 fasta sequence [ATCGCCCGAGGTTTATCGATGACAGCGGATGATCAAGGTCGTCAATCTGGTATCCGGCAGCGGAACACTTTGACTATCAGCCGTTTCTAGACATCCGAGATCTGATCCAGCTGGACGATGCCATGGAAGACGAAGAGCTTCGCTACGGTCCAAATGGTGGGCTGATATTTTGTCTTGAATATCTCATCGAACACTCCGACTGGCTGCGTGATCAGCTGTGTGGAGTCGGTTCCGATGATGAGGACGATACCACCGGCATCGAAGAACCGGACGACGATTATGTGCTGTTCGATATGCCGGGTCAAATCGAACTTTACACCCATCTGAAAGCGGGCAATTCGTTGGCTCGGTTACTAGAATCGTGGAACTTTCGACTCTGCTCCGTGTTCCTGGTCGACTCGCAGTTTATGATTGACGGTGCCAAGTTTTTGTCGGGAACGATGGCTGCATTGAGCGTGATGGCCAACATGGAGCTTCCCCACGTGAACGTGCTTAGTAAAATGGATCTGCTGAGCAAAGTATACCGTGGGCACGATGGACAAATATCTCGACCTGATGCGCATGCACTGCTCGGCGAGGTAACAAACGAATCCGCGTGGGGACGCAAGTATCGCAAGCTGTCGGAAACGATCGGCATGCTGATTGAGGGACTTTAGTTTA] [+] EMBL AL696282 [ATCGCCCGAGGTTTATCGATGACAGCGGATGATCAAGGTCGTCAATCTGGTATCCGGCAGCGGAACACTTTGACTATCAGCCGTTTCTAGACATCCGAGATCTGATCCAGCTGGACGATGCCATGGAAGACGAAGAGCTTCGCTACGGTCCAAATGGTGGGCTGATATTTTGTCTTGAATATCTCATCGAACACTCCGACTGGCTGCGTGATCAGCTGTGTGGAGTCGGTTCCGATGATGAGGACGATACCACCGGCATCGAAGAACCGGACGACGATTATGTGCTGTTCGATATGCCGGGTCAAATCGAACTTTACACCCATCTGAAAGCGGGCAATTCGTTGGCTCGGTTACTAGAATCGTGGAACTTTCGACTCTGCTCCGTGTTCCTGGTCGACTCGCAGTTTATGATTGACGGTGCCAAGTTTTTGTCGGGAACGATGGCTGCATTGAGCGTGATGGCCAACATGGAGCTTCCCCACGTGAACGTGCTTAGTAAAATGGATCTGCTGAGCAAAGTATACCGTGGGCACGATGGACAAATATCTCGACCTGATGCGCATGCACTGCTCGGCGAGGTAACAAACGAATCCGCGTGGGGACGCAAGTATCGCAAGCTGTCGGAAACGATCGGCATGCTGATTGAGGGACTTTAGTTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8578#0 CCGCCAGCATGAACGGTGTGAGTTTGTTTACTTGAGTCTGGTTGCACGAAACATAATTGT 60 consensus_8578#1 ------------------------GCCCGAGGTTAATCTGGTTGCACGAAACATAATTGT 36 consensus_8578#2 ------------------------------------------------------------ consensus_8578#0 ACGTAGAGTTTGTTTCAAAATGAGGTACGGACAGCTCGTAATGGGCCCCGCCGGAAGTGG 120 consensus_8578#1 ACGTAGAGTTTGTTTCAAAATGAGGTACGGACAGCTCGTAATGGGCCCCGCCGGAAGTGG 96 consensus_8578#2 ------------------------------------------------------------ consensus_8578#0 CAAGTCCACCTATTGCGCGACAATGCAACGGCACGGCTTCGATGACAA--GCGGATGATC 178 consensus_8578#1 CAAGTCCACCTATTGCGCGACAATGCAACGGCACGGCTTCGATGACAAT-GCGGATGATC 155 consensus_8578#2 --------------------------ATCGCCCGAGGTTTATCGATGACAGCGGATGATC 34 * ** * * ** ** * ********** consensus_8578#0 AAGGTCGTCAATCTGG-ATCCGGCTGCGGAACACTTTGACTATCAGCCGTTTCTAGACAT 237 consensus_8578#1 AAGGTCGTCAATCTGG-ATCCGGCTGCGGAACACTTTGACTATCAGCCGTTTCTAGACAT 214 consensus_8578#2 AAGGTCGTCAATCTGGTATCCGGCAGCGGAACACTTTGACTATCAGCCGTTTCTAGACAT 94 **************** ******* *********************************** consensus_8578#0 CCGAGATCTGATCCAGCTGGACGATGCCATGGAAGACGAAGAGCTTCGCTACGGTCCGAA 297 consensus_8578#1 CCGAGATCTGATCCAGCTGGACGATGCCATGGAAGACGAAGAGCTTCGCTACGGTCCGAA 274 consensus_8578#2 CCGAGATCTGATCCAGCTGGACGATGCCATGGAAGACGAAGAGCTTCGCTACGGTCCAAA 154 ********************************************************* ** consensus_8578#0 TGGTGGGCTGATATTTTGTATTGAATATCTCATCGAACACTCCGACTGGCTGCGTGATCA 357 consensus_8578#1 TGGTGGGCTGATATTT-GTATTGAATATCTCATCGAACACTCCGACTGGCTGCGTGATCA 333 consensus_8578#2 TGGTGGGCTGATATTTTGTCTTGAATATCTCATCGAACACTCCGACTGGCTGCGTGATCA 214 **************** ** **************************************** consensus_8578#0 GCTGTGTGGAGTCGGTTCCGATGATGAGGACGATACCACCGGCATCGAAGAACCGGACGA 417 consensus_8578#1 GCTGTGTGGAGTCGGTTCCGATGATGAGGACGATACCACCGGCATCGAAGAACCGGACGA 393 consensus_8578#2 GCTGTGTGGAGTCGGTTCCGATGATGAGGACGATACCACCGGCATCGAAGAACCGGACGA 274 ************************************************************ consensus_8578#0 CGATTATGTGCTGTTCGATATGCCGGGTCAAATCGAACTCTACACCCATCTGAAAGCGGG 477 consensus_8578#1 CGATTATGTGCTGTTCGATATGCCGGGTCAAATCGAACTCTACACCCATCTGAAATCGGG 453 consensus_8578#2 CGATTATGTGCTGTTCGATATGCCGGGTCAAATCGAACTTTACACCCATCTGAAAGCGGG 334 *************************************** *************** **** consensus_8578#0 CAATTCGTTG-GCTCGGTTACTAGAATCGTGGAACTTTCGACTCTGCTCCGTGTTCCTGG 536 consensus_8578#1 CAATTCGTTGTGCTCGGTTACTAGAATCGTGGAACTTTCGACTCTGCTCCGTGTTCCTGG 513 consensus_8578#2 CAATTCGTTG-GCTCGGTTACTAGAATCGTGGAACTTTCGACTCTGCTCCGTGTTCCTGG 393 ********** ************************************************* consensus_8578#0 TCGACTCGCAGTTTATGATTGACGGTGCCAAGTTTTTGTCGGGAACGATGGCTGCATTGA 596 consensus_8578#1 TCGACTCGCAGTTTATGATTGACGGTGCCAAGTTCAAGTCGGGAACGATGGCTGCATTGA 573 consensus_8578#2 TCGACTCGCAGTTTATGATTGACGGTGCCAAGTTTTTGTCGGGAACGATGGCTGCATTGA 453 ********************************** *********************** consensus_8578#0 GCGTGATGGCCAACATGGAGCTTCCCCACGTGAACGTGCTTAGTAAAATGGATCTGCTGA 656 consensus_8578#1 GCGTGATGGCCAACATGGAGCTTCCCCACGTGAACGTGCTTAGTAAAATGGATCTGCTGA 633 consensus_8578#2 GCGTGATGGCCAACATGGAGCTTCCCCACGTGAACGTGCTTAGTAAAATGGATCTGCTGA 513 ************************************************************ consensus_8578#0 G--CAAAGTACACCGTGGGCAG-ATGGACAAATATCTCGACCCTGATGCGCAC------- 706 consensus_8578#1 NGCCAACGTACACCGTGGGCAGCATGGACAAA---------------------------- 665 consensus_8578#2 G--CAAAGTATACCGTGGGCACGATGGACAAATATCTCGACC-TGATGCGCATGCACTGC 570 *** *** ********** ********* consensus_8578#0 ------------------------------------------------------------ consensus_8578#1 ------------------------------------------------------------ consensus_8578#2 TCGGCGAGGTAACAAACGAATCCGCGTGGGGACGCAAGTATCGCAAGCTGTCGGAAACGA 630 consensus_8578#0 ------------------------------ consensus_8578#1 ------------------------------ consensus_8578#2 TCGGCATGCTGATTGAGGGACTTTAGTTTA 660 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||