These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8602#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 893 fasta sequence [GCGGAATTCCTCGAGAACTGTTGGCCTACTGGACACCGCACAAACAAAACGCAGC-AAAAACACCAAAACATCCGTCTGCAATCTCTCTCACCAAAAAACCCGGTCGGAAACATTAACATTCATAAATGGCACCGCCAAAAGTAAAACTGCACAAAAACACGGGCAAACTCAAGTACAGTCCACGGCCCGGCTCATTCCCCTCGCCAGCACCGCAACCATCCGCACCAGCAACCGGAAATGCACCCGCTGCCGCGGAACCATCCGAAGCCGATCGACAGTTTGAGCTCGAGCTGTATTGGTGCATCCAGCAGCTAGAATCACAGCTGCACCTTCCAAATGTCCGCGAAAACAACAAAAAGTTGGAAGAAACGTCCAAGCTAATAAACACCCTTAAAAGC-GGCACCCAACC-GATCATCCGCAAGCGGCAGATCATGCGTACCACGTTC-GGGGACTACCGGAGCCGGATGGCGGCCGAGGAGCAGACGAT-GGCCGTCAGCCCGGA-CAGTATTCGGTTCGAGGAGCCGAAGGAG--AAGGCCAAATACCATTTTGTGAAAAAGTCGGCCATTTTAAGCGGCGACAAGAACTTTAAATTTAACTTCCCGAAAAGTGACAGCAACGGTGAGACGGAAACGGTACCGGGGGCAGCG-CCGGTGGCCGTTGAGAAGGA-GGGGCCGGCGAAAGGGGAGAAAAAGGTAGCGGCGGCAGTTGCTCCGGCGAGTGTAATTGTTCCTTCGGATAATTCCTTCCGGTTTAACTTTGCTGTTGGTGGGGAATGAGTGCGTATCGTGGGGGAAGAGTTGGTTTTTGTACGTCGATAGCATTTAAATAAACGTAAGACAACGATGAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCTCGAGCTGGGGGTC] [-] EMBL CNS098XZ [GCGGAATTCCTCGAGAACTGTTGGCCTACTGGACACCGCACAAACAAAACGCAGCAAAAAACACCAAAACATCCCTCTGCAATTTTTCTCACCAAAAAACCCGGTCGGAAACACTTACATTCATTAATGGCACCGCCAAAAGTGAAACTACACAAAAAAACGGGCAAACTCAAGTACAGTCCACGGCCCGGCTCATTCCCCTCGCCAGCACCGCAACCATCCGCACCAGCAACCGGAAATGCACCCGCTGCAGCGGAACCATCCGAAGCCGATCGGCAGTTTGAGCTCGAGCTGTACTGGTGCATCCAGCAGCTGGAATAACAGCTGCACCTTCCAAATGTCCGCGAAAACAACAAAAAGTTGGAAGAAACGTCCAAGCTAATAAACACCCTTAAAAGCGGGCACCCAACCGGATCATCCGCAAGCGGCAGGTCATGCGTACCACGTTC GGGGACTACCGGAGCCGGATGGCGGCCGAGGAGCAGACGAT GGCCGTCAGCCCGGA CAGTATTCGGTTCGAGGAGCCGAAGGAG AAGGCCAAATACCATTTTGTGAAAAAGTCGGCCATTTTAAGCGGCGACAAGAACTTTAAATTTAACTTCCCGAAAAGTTACAGCAACGGTGAGACGGAAACGGTACCGGGGGCAGCG CCGGTGGCCGTTGAGAAGGA GGGGCCGGCGAAAGGGGAGAAAAAGGTAGCGGCGGCAGTTGCTCCGGCGAGTGTAATTGTT CTTCGGATAATTCCTTCCGGTTTAACTTTGCTGTTGGTGGGGAATGAGTGCGTATCGTGGGGGAAGAGTTGGTTTTTGTACGTCGATAGCATTTAAATAAACGTAAGACAACGATGAAAAAAAAAAAA ] [+] EMBL CNS098XY [ CTGGACACCGCTCAAACAAAACGCAGCAAAAAACACCAAAACATCCGTCTGCAATCTCTCTCACCAAAAAACCCGGTCGGAAACACTAACATTCATAAATGGCACCGCCAAAAGTGAAACTACACAAAAACACGGGCAAACTCAAGTACAGTCCACGGCCCGGCTCATTCCCCTCGCCAGCACCGCAACCATCCGCACCAGCAACCGGAAATGCACCCGCTGCAGCGGAACCATCCGAAGCCGATCGGCAGTTTGAGCTCGAGCTGTACTGGTGCATCCAGCAGCTGGAATCACAGCTGCACCTTCCAAATGTCCGCGAAAACAACAAAAAGTTGGAAGAAACGTCCAAGCTAATAAACACCCTTAAAAGC GGCACCCAACC GATCATCCGCAAGCGGCAGATCATGCGTACCACGTTC GGGGACTACCGGAGCCGGATGGCGGCCGAGGAGCAGACGAT GGCCGTCAGCCCGGA CAGTATTCGGTTCGAGGAGCCGAA GAG AAGGCCAAATACCATTTTGTGAAAAAGTCGGCCATTTTAAGCGGCGACAAGAACTTTAAATTTAACTTCCCGAAAAGTGACAGCAACGGTGAGACGGAAACGGTACCGGGGGCAGCG CCGGTGGCCGTTGAGAAGGA GGGGCCGGCGAAAGGGGAGAAAAAGGTAGCGGCGGCAGTTGCTCCGGCGAGTGTAATTGTTCCTTCGGATAATTCCTTCCGGTTTAACTTTGCTGTTGGTGGGGAATGAGTGCGTATCGTGGGGGAAGAGTTGGTTTTTGTACGTCGATAGCATTTAAATAAACGTAAGACAACGATGAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCTCGAGCTGGGGGTC] [+] EMBL BM638367 [ ccgACCGCACAAACAAAACGCAGC AAAAACACCAAAACATCCGTCTGCAATCTCTCTCACCAAAAAACCCGGTCGGAAACATTAACATTCATAAATGGCACCGCCAAAAGTAAAACTGCACAAAAACACGGGCAAACTCAAGTACAGTCCACGGCCCGGCTCATTCCCCTCGCCAGCACCGCAACCATCCGCACCAGCAACCGGAAATGCACCCGCTGCCGCGGAACCATCCGAAGCCGATCGACAGTTTGAGCTCGAGCTGTATTGGTGCATCCAGCAGCTAGAATCACAGCTGCACCTTCCAAATGTCCGCGAAAACAACAAAAAGTTGGAAGAAACGTCCAAGCTAATAAATACCCTTAAAAGC GGCACCCAACC GATCATCCGCAAGCGGCAGATCATGCGTACCACGTTC GGGGACTACCGGAGCCGGATGGCGGCCGAGGAGCAGACGAT GGCCGTCAGCCCGGA CAGTATACGGTTCGAGGAGCCGAAGGAG AAGGCCAAATACCATTTTGTGAAAAAGTCGGCCATTTTAAGCGGCGATAAGAACTTTAAATTTAACTTCCCGAAAAGTGACAGCAACGGTGAGACGGAAACGGTATCGGGGGCAGCG CCGGTGGCCGTTGAGAAAGA GGGGCCG ] [+] EMBL BM642673 [ ccgCAAAACGCAGC AAAAACACCAAAACATCCGTCTGCAATCTCTCTCACCAAAAAACCCGGTCGGAAACATTAACATTCATAAATGGCACCGCCAAAAGTAAAACTGCACAAAAACACGGGCAAACTCAAGTACAGTCCACGGCCCGGCTCATTCCCCTCGCCAGCACCGCAACCATCCGCACCAGCAACCGGAAATGCACCCGCTGCCGCGGAACCATCCGAAGCCGATCGACAGTTTGAGCTCGAGCTGTATTGGTGCATCCAGCAGCTAGAATCACAGCTGCACCTTCCAAATGTCCGCGAAAACAACAAAAAGTTGGAAGAAACGTCCAAGCTAATAAATACCCTTAAAAGC GGCACCCAACC GATCATCCGCAAGCGGCAGATCATGCGTACCACGTTC GGGGACTACCGGAGCCGGATGGCGGCCGAGGAGCAGACGAT GGCCGTCAGCCCGGA CAGTATACGGTTCGAGGAGCCGAAGGAG AAGGCCAAATACCATTTTGTGAAAAAGTCGGCCATTTTAAGCGGCGATAAGAACTTTAAATTTAACTTCCCGAAAAGTGACAGCAACGGTGAGACGGAAACGGTATCGGGGGCAGCG CCGGTGGCCGTTGAGAAGGA GGGGCCGGCGAAAGGGGAGAAAAAGGTAGCGGCGGTAGTTGCTCCGGCGAGTGTA ] [+] EMBL BX628116 [ AACGCAGC AAAAACACCAAAACATCCGTCTGCAATCTCTCTCACCAAAAAACCCGGTCGGAAACATTAACATTCATAAATGGCACCGCCAAAAGTAAAACTGCACAAAAACACGGGCAAACTCAAGTACAGTCCACGGCCCGGCTCATTCCCCTCGCCAGCACCGCAACCATCCGCACCAGCAACCGGAAATGCACCCGCTGCCGCGGAACCATCCGAAGCCGATCGACAGTTTGAGCTCGAGCTGTATTGGTGCATCCAGCAGCTAGAATCACAGCTGCACCTTCCAAATGTCCGCGAAAACAACAAAAAGTTGGAAGAAACGTCCAAGCTAATAAATACCCTTAAAAGC GGCACCCAACC GATCATCCGCAAGCGGCAGATCATGCGTACCACGTTC GGGGACTACCGGAGCCGGATGGCGGCCGAGGAGCAGACGAT GGCCGTCAGCCCGGA CAGTATACGGTTCGAGGAGCCGAAGGAG AAGGCCAAATACCATTTTGTGAAAAAGTCGGCCATTTTAAGCGGCGATAAGAACTTTAAATTTAACTTCCCGAAAAGTGACAGCAACGGTGAGACGGAAACGGTATCGGGGGCAGCG CCGGTGGCCGTTGAGAANGA GGGGCCGGCGAAAGGGGAGAAAAAGGTAGCGGCGGTAGTTGCTCCGGCGAGTGTAATTGTTCCTTCGGATAATTCCTTC ] [+] EMBL AL930430 [ gccgaggttAACGCAGC AAAACA CAAAACAT CGTCTGC ATCTCTCTCACCAAAAAACCCGGTCGGAAACATTAACATTCATAAATGGCACCGCCAAAAGTAAAACTGCACAAAAACACGGGCAAACTCAAGTACAGTCCACGGCCCGGCTCATTCCCCTCGCCAGCACCGCAACCATCCGCACCAGCAACCGGAAATGCACCCGCTGCCGCGGAACCATCCGAAGCCGATCGACAGTTTGAGCTCGAGCTGTATTGGTGCATCCAGCAGCTAGAATCACAGCTGCACCTTCCAAATGT CGCGAAAACAACAAAAAGTTGGAAGAAACGTCCAAGCTAATAAATACCCTTAAAAGC GGCA CCAACC GATCATCCGCAAGCGGCAGATCATGCGTACCACGTTC GGGGACTACCGGAGCCGGATGGCGGCCGAGGAGCAGACGATGGGCCGTCAG CCGGACCAGTATACGG TCGAGGAGCCGAAGGAGGAAAGGCCA ] [+] EMBL CNS09O4Q [ AACACCAAAACATCCGTCTGCAATCTCTCTCACCAAAAAACCCGGTCGGAAACACTAACATTCATAAATGGCACCGCCAAAAGTGAAA TACACAAAAACACGGGCAAACTCAAGTACAGTCCACGGCCCGGCTCATTCCCCTCGCCAGCACCGCAACCATCCGCACCAGCAACCGGAAATGCACCCGCTGCAGC GAACCATCCGAAGCCGATCGGCAGTTTGAGCTCGAGCTGTACTGGTGCATCCAGCAGCTGGAATCACAGCTGCACCTTCCAAATGTCCGCGAAAACAACAAAAAGTTGGAAGAAACGTCCAAGCTAATAAACACCCTTAAAAGC GGCACCCAACC GATCATCCGCAAGCGGCAGATCATGCGTACCACGTTCGGGGGACTACCGGAGCCGGATGGCGGCCGAGGAGCAGACGAT GGCCGTCAGCCCGGA CAGTATTCGGTTCGAGGAGCCGAA GAG AAGGCCAAATACCATTTTGTGAAAAAGTCGGCCATTTTAAGCGGCGACAAGAACTTTAAATTTAACTTCCCGAAAAGTGACAGCAACGGTGAGACGGAAACGGTACCGGGGGCAGCG CCGGTGGCCGTTGAGAAGGAGGGGGCCG ] [+] EMBL BX623642 [ CGGAAATGCACCCGCTGCCGCGGAACCATCCGAAGCCGATCGACAGTTTGAGCTCGAGCTGTATTGGTGCATCCAGCAGCTAGAATCACAGCTGCACCTTCCAAATGTCCGCGAAAACAACAAAAAGTTGGAAGAAACGTCCAAGCTAATAAATACCCTTAAAAGC GGCACCCAACC GATCATCCGCAAGCGGCAGATCATGCGTACCACGTTC GGGGACTACCGGAGCCGGATGGCGGCCGAGGAGCAGACGAT GGCCGTCAGCCCGGA CAGTATACGGTTCGAGGAGCCGAAGGAG AAGGCCAAATACCATTTTGTGAAAAAGTCGGCCATTTTAAGCGGCGATAAGAACTTTAAATTTAACTTCCCGAAAAGTGACAGCAACGGTGAGACGGAAACGGTATCGGGGGCAGCG CCGGTGGCCGTTGAGAAGGA GGGGCCGGCGAAAGGGGAGAAAAAGGTAGCGGCGGTAGTTGCTCCGGCGAGTGTAATTGTTCCTTCGGATAATTCCTTCCGGTTTAACTTTGCTGTTGGTGGGGAATGAGCGCTTATCGTGGGGGAAGAGTTGGTTTTTGTACGTTGATAGCATTTAAATAAACGTAAGA ] [-] EMBL CNS09O4R [ GAACCATCCGAAGCCGATCGGCAGTTTGAGCTCGAGCTGTACTGGTGCATCCAGCAGCTGGAATTACAGCTGCACCTTCCAAATGTCCGCGAAAACAACAAAAAGTTGGAAGAAACGTCCAAGCTAATAAACACCCTTAAAAGC GGCACCCAACC GATCATCCGCAAGCGGCAGGTCATGCGTACCACGTTC GGGGACTACCGGAGCCGGATGGCGGCCGAGGAGCAGACGAT GGCCGTCAGCCCGGA CAGTATTCGGTTCGAGGAGCCGAAGGAG AAGGCCAAATACCATTTTGTGAAAAAGTCGGCCATTTTAAGCGGCGACAAGAACTTTAAATTTAACTTCCCGAAAAGTTACAGCAACGGTGAGACGGAAACGGTACCGGGGGCAGCG CCGGTGGCCGTTGAGAAGGA GGGGCCGGCGAAAGGGGAGAAAAAGGTAGCGGCGGCAGTTGCTCCGGCGAGTGTAATTGTT CTTCGGATAATTCCTTCCGGTTTAACTTTGCTTTTGGTGGGGAATGAGTGCGTTTCGTGGGGGAAGAGTTGGTTTTTGTACGTCGATAGCATTTAAATAA ] [+] EMBL CNS08RRP [ AAACGTCCAAGCTAATAAACACCCTTAAAAGC GGCACCCAACC GATCATCCGCAAGCGGCAGATCATGCGTACCACGTTC GGGGACTACCGGAGCCGGATGGCGGCCGAGGAGCAGACGAT GGCCGTCAGCCCGGA CAGTATTCGGTTCGAGGAGCCGAA GAG AAGGCCAAATACCATTTTGTGAAAAAGTCGGCCATTTTAAGCGGCGACAAGAACTTTAAATTTAACTTCCCGAAAAGTGACAGCAACGGTGAGACGGAAACGGTACCGGGGGCAGCGCCCGGTGGCCGTTGAGAAGGA GGGGCCGGCGAAAGGGGAGAAAAAGGTAGCGGCGGCAGTTGCTCCGGCGAGTGTAATTGTTCCTTCGGATAATTCCTTCCGGTTTAACTTTGCTGTTGGTGGGGAATGAGTGCGTATCGTGGGGGAAGAGTTGGTTTTTGTACGTCGATAGCATTTAAATAAACGTAAGACAACGATG AAAAAAAAAAAAAAAAAGGCCACAT TGCCCG ] consensusID : consensus_8602#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 492 fasta sequence [TGGCCTACTGGAAAACAACAAAAAGTTGGAAGAAACGTCCAAGCTAATAAACACCCTTAAAAGCCGGCACCCAACCGATCATCCGCAAGCGGCAGGTCATGCGTACCACGTTCGGGGACTACCGGAGCCGGATGGCGGCCGAGGAGCAGACGATGGCCGTCAGCCCGGACAGTATTCGGTTCGAGGAGCCGAAGGAGAAGGCCAAATACCATTTTGTGAAAAAGTCGGCCATTTTAAGCGGCGACAAGAACTTTAAATTTAACTTCCCGAAAAGTTACAGCAACGGTGAGACGGAAACGGTACCGGGGGCAGCGCCGGTGGCCGTTGAGAAGGAGGGGCCGGCGAAAGGGGAGAAAAAGGTAGCGGCGGGAGTTGCTCCCGGGCGAGTGTAATTGTTCTTCGGATAATTCCTTCCGGTTTAACTTTGCTGTTGGTGGGGAATGAGTGCGTATCGTGGGGGAAGAGTTGGTTTTTGTACGTCGATAGCATTTA] [-] EMBL CNS08RRQ [TGGCCTACTGGAAAACAACAAAAAGTTGGAAGAAACGTCCAAGCTAATAAACACCCTTAAAAGCCGGCACCCAACCGATCATCCGCAAGCGGCAGGTCATGCGTACCACGTTCGGGGACTACCGGAGCCGGATGGCGGCCGAGGAGCAGACGATGGCCGTCAGCCCGGACAGTATTCGGTTCGAGGAGCCGAAGGAGAAGGCCAAATACCATTTTGTGAAAAAGTCGGCCATTTTAAGCGGCGACAAGAACTTTAAATTTAACTTCCCGAAAAGTTACAGCAACGGTGAGACGGAAACGGTACCGGGGGCAGCGCCGGTGGCCGTTGAGAAGGAGGGGCCGGCGAAAGGGGAGAAAAAGGTAGCGGCGGGAGTTGCTCCCGGGCGAGTGTAATTGTTCTTCGGATAATTCCTTCCGGTTTAACTTTGCTGTTGGTGGGGAATGAGTGCGTATCGTGGGGGAAGAGTTGGTTTTTGTACGTCGATAGCATTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8602#0 GCGGAATTCCTCGAGAACTGTTGGCCTACTGGACACCGCACAAACAAAACGCAGCAAAAA 60 consensus_8602#1 ------------------------------------------------------------ consensus_8602#0 CACCAAAACATCCGTCTGCAATCTCTCTCACCAAAAAACCCGGTCGGAAACATTAACATT 120 consensus_8602#1 ------------------------------------------------------------ consensus_8602#0 CATAAATGGCACCGCCAAAAGTAAAACTGCACAAAAACACGGGCAAACTCAAGTACAGTC 180 consensus_8602#1 ------------------------------------------------------------ consensus_8602#0 CACGGCCCGGCTCATTCCCCTCGCCAGCACCGCAACCATCCGCACCAGCAACCGGAAATG 240 consensus_8602#1 ------------------------------------------------------------ consensus_8602#0 CACCCGCTGCCGCGGAACCATCCGAAGCCGATCGACAGTTTGAGCTCGAGCTGTATTGGT 300 consensus_8602#1 ------------------------------------------------------------ consensus_8602#0 GCATCCAGCAGCTAGAATCACAGCTGCACCTTCCAAATGTCCGCGAAAACAACAAAAAGT 360 consensus_8602#1 ----------------------------------TGGCCTACTGGAAAACAACAAAAAGT 26 * * **************** consensus_8602#0 TGGAAGAAACGTCCAAGCTAATAAACACCCTTAAAAGC-GGCACCCAACCGATCATCCGC 419 consensus_8602#1 TGGAAGAAACGTCCAAGCTAATAAACACCCTTAAAAGCCGGCACCCAACCGATCATCCGC 86 ************************************** ********************* consensus_8602#0 AAGCGGCAGATCATGCGTACCACGTTCGGGGACTACCGGAGCCGGATGGCGGCCGAGGAG 479 consensus_8602#1 AAGCGGCAGGTCATGCGTACCACGTTCGGGGACTACCGGAGCCGGATGGCGGCCGAGGAG 146 ********* ************************************************** consensus_8602#0 CAGACGATGGCCGTCAGCCCGGACAGTATTCGGTTCGAGGAGCCGAAGGAGAAGGCCAAA 539 consensus_8602#1 CAGACGATGGCCGTCAGCCCGGACAGTATTCGGTTCGAGGAGCCGAAGGAGAAGGCCAAA 206 ************************************************************ consensus_8602#0 TACCATTTTGTGAAAAAGTCGGCCATTTTAAGCGGCGACAAGAACTTTAAATTTAACTTC 599 consensus_8602#1 TACCATTTTGTGAAAAAGTCGGCCATTTTAAGCGGCGACAAGAACTTTAAATTTAACTTC 266 ************************************************************ consensus_8602#0 CCGAAAAGTGACAGCAACGGTGAGACGGAAACGGTACCGGGGGCAGCGCCGGTGGCCGTT 659 consensus_8602#1 CCGAAAAGTTACAGCAACGGTGAGACGGAAACGGTACCGGGGGCAGCGCCGGTGGCCGTT 326 ********* ************************************************** consensus_8602#0 GAGAAGGAGGGGCCGGCGAAAGGGGAGAAAAAGGTAGCGGCGGCAGTTGCTCC--GGCGA 717 consensus_8602#1 GAGAAGGAGGGGCCGGCGAAAGGGGAGAAAAAGGTAGCGGCGGGAGTTGCTCCCGGGCGA 386 ******************************************* ********* ***** consensus_8602#0 GTGTAATTGTTCCTTCGGATAATTCCTTCCGGTTTAACTTTGCTGTTGGTGGGGAATGAG 777 consensus_8602#1 GTGTAATTGTTC-TTCGGATAATTCCTTCCGGTTTAACTTTGCTGTTGGTGGGGAATGAG 445 ************ *********************************************** consensus_8602#0 TGCGTATCGTGGGGGAAGAGTTGGTTTTTGTACGTCGATAGCATTTAAATAAACGTAAGA 837 consensus_8602#1 TGCGTATCGTGGGGGAAGAGTTGGTTTTTGTACGTCGATAGCATTTA------------- 492 *********************************************** consensus_8602#0 CAACGATGAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCTCGAGCTGGGGGTC 893 consensus_8602#1 -------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||