These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8656#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 716 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGCAAATCTTCGCACTGCGGATTCAACCGAAAAGCAGTAGAGAGGGCGTTTGTTGACCAGATGAGCAAAGATTCGCTTCTTGGACGTGCCGTTTGATAGTGAACACAAAATCGCAAGCCAATTCGTGTGGTGAATGATTTAAAACGATTGTTGTGCGATAAATCACGTAAACATTTGCTGATAAAAAACGATACAAGCGTCGGTTGCTGAAGACCCAAAACGTTCTTGGAAATTGGAGTGGAGCTCTGTCAGCGTGTGTAGGTTGAAGAGTAGCTTTTAAAAACGCACACATTTAATGCGCATCAGTAGAGTGTTGTTCGATTTTACCCTCTCGTGAGATAGTGTGCCAGCTGTTTACATTGCCGTTGCGTTTCCGAGAACGTCCCGTTTCCGATTGCACGCATTAATCACACCACACTTCCGTGTGCGT-TTTTTTTTTTGGGAGCGCAGTTTGTTTTTTCCCCCCATCCCGGAGTGCGAGTGCGAGGTGACGCGGTGGAAAATTTGGATCCGGAGCGCCGAGCTGTGTGTATTGGATTCCCGCTGGCTGACGAAAAAGCCCTGCGCCATTACGTTGTAAACAAAG-CCGTCGGTCGTTCGGTGTGTGCGTGTGTGTGTGTGTGTGCAGTGCGGTTACACGAAAGGTGCGTCTCTTGGAGGGTGCAGTGCGCGTGTGTGAGTGAAAGTCTTT] [+] EMBL BM648027 [CCGCCCACGCGTCCGCCCACGCGTCCGCAAATCTTCGCACTGCGGATTCAACCGAAAAGCAGTAGAGAGGGCGTTTGTTGACCAGATGAGCAAAGATTCGCTTCTTGGACGTGCCGTTTGATAGTGAACACAAAATCGCAAGCCAATTCGTGTGGTGAATGATTTAAAACGATTGTTGTGCGATAAATCACGTAAACATTTGCTGATAAAAAACGATACAAGCGTCGGTTGCTGAAGACCCAAAACGTTCTTGGAAATTGGAGTGGAGCTCTGTCAGCGTGTGTAGGTTGAAGAGTAGCTTTTAAAAACGCACACATTTAATGCGCATCAGTAGAGTGTTGTTCGATTTTACCCTCTCGTGAGATAGTGTGCCAGCTGTTTACATTGCCGTTGCGTTTCCGAGAACGTCCCGTTTCCGATTGCACGCATTAATCACACCACACTTCCGTGTGCGT TTTTTTTTTTGGGAGCGCAGTTTGTTTTTTCCCCCCATCCCGGAGTGCGAGTGCGAGGTGACGCGGTGGAAAATTTGGATCCGGAGCGCCGAGCTGTGTGTATTGGATTCCCGCTGGCTGA ] [+] EMBL BM631507 [ ccgGCAAATCTTCGCACTGCGGATTCAACCGAAAAGCAGTACAGAGGGCGTTTGTTGACCAGATGAGCAAAGATTCGCTTCTTGGACGTGCCGTTTGATAGTGAACACAAAATCGCAAGCCAATTCGTGTGGTGAATGATTTAAAACGATTGTTGTGCGATAAATCACGTAAACATTTGCTGATAAAAAACGATACAAGCGTCGGTTGCTGAAGACCCAAAACGTTCTTGGAAATTGGAGTGGAGCTCTGTCAGCGTGTGTAGGTTGAAGAGTAGCTTTTAAAAACGCACACATTTAATGCGCATCAGTAGAGTGTTGTTCGATTTTACCCTCTCGTGAGATAGTGTGCCAGCTGTTTACATTGCCGTTGCGTTTCCGAGAACGTCCCGTTTCCGATTGCACGCATTAATCACACCACACTTCCGTGTGCGT TTTTTTTTTTGGGAGCGCAGTTTGGTTTTTCCCCCCATCCCGGAGTGCGAGTGCGAGGTGACGCGGTGGAAAATTTGGATCCGGAGCGCCGAGCTGTGTGTATTGGATTCCCGCTGGCTGACGAAAAAGCCCTGCGCCATTACGTTGTAAACAAAG CCG ] [+] EMBL BM611050 [ ccgCAACCGAAAAGCAGTAGAGAGGGCGTTTGTTGACCAGATGAGCAAAGATTCGCTTCTTGGACGTGCCGTTTGATAGTGAACACAAAATCGCAAGCCAATTCGTGTGGTGAATGATTTAAAACGATTGTTGTGCGATAAATCACGTAAACATTTGCTGATAAAAAACGATACAAGCGTCGGTTGCTGAAGACCCAAAACGTTCTTGGAAATTGGAGTGGAGCTCTGTCAGCGTGTGTAGGTTGAAGAGTAGCTTTTAAAAACGCACACATTTAATGCGCATCAGTAGAGTGTTGTTCGATTTTACCCTCTCGTGAGATAGTGTGCCAGCTGTTTACGTTGCCGTTGCGTTTCCGAGAACGTCCCGTTTCCGATTGCACGCATTAATCACACCACACTTCCGTGTGCGT TTTTTTTTTTGGGAGCGCAGTTTGTTTTTTCCCCCCATCCCGGAGTGCGAGTGCGAGGTGACGCGGTGGAAAATTTGGATCCGGAGCGCCGAGCTGTGTGTATTGGATTCCCGCTGGCTGACGAAAAAGCCCTGCGCCATTACGTTGTAAACAAAG CCGTCGGTCGTTCGGTGTGTGCGTGTGTGTGTGTGTGTG ] [+] EMBL BM613249 [ ccgAACCGAAAAGCAGTAGAGAGGGCGTTTGTTGACCAGATGAGCAAAGATTCGCTTCTTGGACGTGCCGTTTGATAGTGAACACAAAATCGCAAGCCAATTCGTGTGGTGAATGATTTAAAACGATTGTTGTGCGATAAATCACATAAACATTTGCTGATAAAAAACGATACAAGCGTCGGTTGCTGAAGACCCAAAACGTTCTTGGAAGTTGGAGTGGAGCTCTGTCAGCGTGTGTAGGTTGAAGAGTTGCTTATAAAAACGCACACATTTAATGCGCATCAGTAGAGTGTTGTTCGTTTTTACCCTCTCGTGAGATAGTGTGCCAGCTGTTTACATTGCCGTTGCGTTTCCGAGAACGTCCCGTTTCCGATTGCACGCATTAATCACACCACACTTCCGTGTGTGTGTGTTTTTTTTGGGAGCGCAGTTTGTTTTTCCCCCCCATCCCGTAGTGCGAGTGCGAGGTGACGCGGTGGAAAATTTGGATCCGGAGCGCCGAGCTGTGTGTATTGGATTCCCGCTGGCTGACGAAAAAGCCCTGCGCCATTACGTTGTAAACAAAG CCGTCGGTCGTTCGGTGTGTGCGTGTGTGTGTGTGTGTGCAGTGCGGTTACACGAAAGGTGCGTCTCTTGGAGGGTGCAGTGCGCGTGTGTGAGTGAAAGTCTTT] [+] EMBL BM577152 [ ccgCCGAAAAGCAGTAGAGAGGGCGTTTGTTGACCAGATGAGCAAAGATTCGCTTCTTGGACGTGCCGTTTGATAGTGAACACAAAATCGCAAGCCAATTCGTGTGGTGAATGATTTAAAACGATTGTTGTGCGATAAATCACGTAAACATTTGCTGATAAAAAACGATACAAGCGTCGGTTGCTGAAGACCCAAAACGTTCTTGGAAATTGGAGTGGAGCTCTGTCAGCGTGTGTAGGTTGAAGAGTAGCTTTTAAAAACGCACACATTTAATGCGCATCAGTAGAGTGTTGTTCGATTTTACCCTCTCGTGAGATAGTGTGCCAGCTGTTTACATTGCCGTTGCGTTTCCGAGAACGTCCCGTTTCCGATTGCACGCATTAATCACACCACACTTCCGTGTGCGT TTTTTTTTTTGGGAGCGCAGTTTGTTTTTTCCCCCCATCCCGGAGTGCGAGTGCGAGGTGACGCGGTGGAAAATTTGGATCCGGAGCGCCGAGCTGTGTGTATTGGATTCCCGCTGGCTGACGAAAAAGCCCTGCGCCATTACGTTGTA ] [+] EMBL BM632521 [ ccgCGAAAAGCAGTAGAGAGGGCGTTTGTTGACCAGATGAGCAAAGATTCGCTTCTTGGACGTGCCGTTTGATAGTGAACACAAGGGGGGGAGCCAATTCGTGTGGTGAATGATTTAAAACGATTGTTGTGCGATAAATCACGTAAACATTTGCTGATAAAAAACGATACAAGCGTCGGTTGCTGAAGACCCAAAACGTTCTTGGAAATTGGAGTGGAGCTCTGTCAGCGTGTGTAGGTTGAAGAGTAGCTTTTAAAAACGCACACATTTAATGCGCATCAGTAGAGTGTTGTTCGATTTTACCCTCTCGTGAGATAGTGTGCCAGCTGTTTACATTGCCGTTGCGTTTCCGAGAACGTCCCGTTTCCGATTGCACGCATTAATCACACCACACTTCCGTGTGCG TTTTTTTTTTGGGAGCGCAGTTTGTTTTTTCCCCCCATCCCGGAGTGCGAGTGCGAGGTGACGCGGTGGAAAATTTGGATCCGGAGCGCCGAGCTGTGTGTATTGGATTCCCGCTGGCTGACGAAAAAGCCCTGCGCCATTACGTTGTAAACAAAGCCCGTCGGTCCTT ] [+] EMBL BM632032 [ ccGATTCGCTTCTTGGACGTGCCGTTTGATAGTGAACACAAAATCGCAAGCCAATTCGTGTGGTGAATGATTTAAAACGATTGTTGTGCGATAAATCACATAAACATTTGCTGATAAAAAACGATACAAGCGTCGGTTGCTGAAGACCCAAAACGTTCTTGGAAGTTGGAGTGGAGCTCTGTCAGCGTGTGTAGGTTGAAGAGTTGCTTATAAAAACGCACACATTTAATGCGCATCAGTAGAGTGTTGTTCGTTTTTACCCTCTCGTGAGATAGTGTGCCAGCTGTTTACATTGCCGTTGCGTTTCCGAGAACGTCCCGTTTCCGATTGCACGCATTAATCACACCACACTTCCGTGTGTGTGTGTTTTTTTTGGGAGCGCAGTTTGTTTTTCCCCCCCATCCCGTAGTGCGAGTGCGAGGTGACGCGGTGGAAAATTTGGATCCGGAGCGCCGAGCTGTGTGTATTGGATTCCCGCTGGCTGACGAAAAAGCCCTGCGCCATTACGTTGTAAACAAAG CCGTCGGTCGTTCGGTGTGTGCGTGTGTGTGTGTGTGTGCAGTGCGGTTACACGAAAGGTGCGTCTCTTGGAGGGTGCAG ] [+] EMBL AGA281735 [ GATAGTGAACCCAAAATCGCAAGCCAATTCGTGTGGTGAATGATTTAAAACGATTGTTGTGCGATAAATCACATAAATATTTGCTGATAAAAAACGATACAAGCGTCGGTTGCTGAAGACCCAAAACGATATTGGAAATTGGAGTGGAGCTCTGTCAGCGTGTGTAGGTTGAAGAGTGCCTTTAAAAAACGTACACATTTAATGCGCATCAGTAGAGTGTTGTTCGTTTTTACCCTCTCGTGAGATAGTGTGCCAGCTGTTTACATTGCCGTTGCGTTTCCGAGAACGTCCCATTTCCGATTGCACGCATTAATCACACCACACTTCCGTGTGTG TGTCTTTTTTGGGAGCGTAGTTTGTTTTTT CCCCCATCCCGGAGTGCGAGTGCGgg ] [-] EMBL AGA280049 [ GAACCCAAAATCGCAAGCCAATTCGTGTGGTGAATGATTTAAAACGATTGTTGTGCGATAAATCACATAAATATTTGCTGATAAAAAACGATACAAGCGTCGGTTGCTGAAGACCCAAAACGATATTGGAAATTGGAGTGGAGCTCTGTCAGCGTGTGTAGGTTGAAGAGTGCCTTTAAAAAACGTACACATTTAATGCGCATCAGTAGAGTGTTGTTCGTTTTTACCCTCTCGTGAGATAGTGTGCCAGCTGTTTACATTGCCGTTGCGTTTCCGAGAACGTCCCATTTCCGATTGCACGCATTAATCACACCACACTTCCGTGTGTG TGTCTTTTTTGGGAGCGTAGTTTGTTTTTT CCCCCATCCCGGAGTGCGAGTGCGGGGTG GG GGAAAAaaaa ] consensusID : consensus_8656#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 467 fasta sequence [AATCCCCCGAGGTTTAAAAGCNGTAAGAGGGCGTCCGTTGACCAGATGAGCAAAGATTCGCTTCTTGGACGTGCCGTTTGATAGTGAACCCAAAATCGCAAGCCAATTCGTGTGGTGCAATGATTTAAAACGATTGTTGTGCGATAAATCACATAAATATTTGCTGATAAAAAACGATACAAGCGTCGGTTGCTGAAGACCCAAAACGATATTGGAAATCTGGAGTGGAGCTACTGTCAGCGTGTGTAGGTTGAAGAGTGCCTTTAAAAAACGTACACATTTAAACTGCAGGCATCAGTAAGAAGTGTNGGTATCGGTGTAGTTAAGCACCTCCTCNGTGAGCATANGTGTGGCCCAGAACTGGTGTTAACAATTTGGCCGGTNTGGCGGTTTNCNCCGGAGGAAACGGTTGCCACTTTTTCCGATATGCGACGGCCTTAAGTCACACANAAAANGTCCGTGGTGGT] [+] EMBL AL932540 [AATCCCCCGAGGTTTAAAAGCNGTAAGAGGGCGTCCGTTGACCAGATGAGCAAAGATTCGCTTCTTGGACGTGCCGTTTGATAGTGAACCCAAAATCGCAAGCCAATTCGTGTGGTGCAATGATTTAAAACGATTGTTGTGCGATAAATCACATAAATATTTGCTGATAAAAAACGATACAAGCGTCGGTTGCTGAAGACCCAAAACGATATTGGAAATCTGGAGTGGAGCTACTGTCAGCGTGTGTAGGTTGAAGAGTGCCTTTAAAAAACGTACACATTTAAACTGCAGGCATCAGTAAGAAGTGTNGGTATCGGTGTAGTTAAGCACCTCCTCNGTGAGCATANGTGTGGCCCAGAACTGGTGTTAACAATTTGGCCGGTNTGGCGGTTTNCNCCGGAGGAAACGGTTGCCACTTTTTCCGATATGCGACGGCCTTAAGTCACACANAAAANGTCCGTGGTGGT] consensusID : consensus_8656#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 434 fasta sequence [CCGCCCACGCGTCCGCGAAAAGCAGTAGAGAGGGCGTTTGTTGACCAGATGAGCAAAGATTCGCTTCTTGGACGTGCCGTTTGATAGTGAACACAAAATCGCAAGCCAATTCGTGTGGTGAATGATTTAAAACGATTGTTGTGCGATAAATCACGTAAACATTTGCTGATAAAAAACGATACAAGCGTCGGTTGCTGAAGACCCAAAACGTTCTTGGAAATTGGAGTGGAGCTCTGTCAGCGTGTGTAGGTTGAAGAGTAGCTTTTAAAAACGCACACATTTAATGCGCATCAGTAGAGTGTTGTTCGATTTTACCCTCTCGTGAGATAGTGTGCCAGCTGTTTACATTGCCGTTGCGTTTCCGAGAACGTCCCGTTTCCGATTGCACGCATTAATCACACCACACTTCCGTGTGCGTTTTTTTTTTTGGGAGC] [+] EMBL BM620890 [CCGCCCACGCGTCCGCGAAAAGCAGTAGAGAGGGCGTTTGTTGACCAGATGAGCAAAGATTCGCTTCTTGGACGTGCCGTTTGATAGTGAACACAAAATCGCAAGCCAATTCGTGTGGTGAATGATTTAAAACGATTGTTGTGCGATAAATCACGTAAACATTTGCTGATAAAAAACGATACAAGCGTCGGTTGCTGAAGACCCAAAACGTTCTTGGAAATTGGAGTGGAGCTCTGTCAGCGTGTGTAGGTTGAAGAGTAGCTTTTAAAAACGCACACATTTAATGCGCATCAGTAGAGTGTTGTTCGATTTTACCCTCTCGTGAGATAGTGTGCCAGCTGTTTACATTGCCGTTGCGTTTCCGAGAACGTCCCGTTTCCGATTGCACGCATTAATCACACCACACTTCCGTGTGCGTTTTTTTTTTTGGGAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8656#0 CCGCCCACGCGTCCGCCCACGCGTCCGCAAATCTTCGCACTGCGGATTCAACCGAAAAGC 60 consensus_8656#2 ----------------------------------CCGC-CCACGCGTCCG--CGAAAAGC 23 consensus_8656#1 -----------------------------------AATCCCCCGAGGTTT----AAAAGC 21 * ** ****** consensus_8656#0 AGTAGAGAGGGCGTTTGTTGACCAGATGAGCAAAGATTCGCTTCTTGGACGTGCCGTTTG 120 consensus_8656#2 AGTAGAGAGGGCGTTTGTTGACCAGATGAGCAAAGATTCGCTTCTTGGACGTGCCGTTTG 83 consensus_8656#1 NGTA-AGAGGGCGTCCGTTGACCAGATGAGCAAAGATTCGCTTCTTGGACGTGCCGTTTG 80 *** ********* ******************************************** consensus_8656#0 ATAGTGAACACAAAATCGCAAGCCAATTCGTGTGGTG-AATGATTTAAAACGATTGTTGT 179 consensus_8656#2 ATAGTGAACACAAAATCGCAAGCCAATTCGTGTGGTG-AATGATTTAAAACGATTGTTGT 142 consensus_8656#1 ATAGTGAACCCAAAATCGCAAGCCAATTCGTGTGGTGCAATGATTTAAAACGATTGTTGT 140 ********* *************************** ********************** consensus_8656#0 GCGATAAATCACGTAAACATTTGCTGATAAAAAACGATACAAGCGTCGGTTGCTGAAGAC 239 consensus_8656#2 GCGATAAATCACGTAAACATTTGCTGATAAAAAACGATACAAGCGTCGGTTGCTGAAGAC 202 consensus_8656#1 GCGATAAATCACATAAATATTTGCTGATAAAAAACGATACAAGCGTCGGTTGCTGAAGAC 200 ************ **** ****************************************** consensus_8656#0 CCAAAACGTTCTTGGAAAT-TGGAGTGGAGCT-CTGTCAGCGTGTGTAGGTTGAAGAGTA 297 consensus_8656#2 CCAAAACGTTCTTGGAAAT-TGGAGTGGAGCT-CTGTCAGCGTGTGTAGGTTGAAGAGTA 260 consensus_8656#1 CCAAAACGATATTGGAAATCTGGAGTGGAGCTACTGTCAGCGTGTGTAGGTTGAAGAGTG 260 ******** * ******** ************ ************************** consensus_8656#0 GCTTTTAAAAACGCACACATTTAA--TGC--GCATCAGTAG--AGTGTTGTT--CGAT-- 347 consensus_8656#2 GCTTTTAAAAACGCACACATTTAA--TGC--GCATCAGTAG--AGTGTTGTT--CGAT-- 310 consensus_8656#1 CCTTTAAAAAACGTACACATTTAAACTGCAGGCATCAGTAAGAAGTGTNGGTATCGGTGT 320 **** ******* ********** *** ********* ***** * * ** * consensus_8656#0 --TTTACCCTCTCGTGAGATAGTGTGCCAGCTGTTTACA-TTGCCGTTG-CGTTTCCGAG 403 consensus_8656#2 --TTTACCCTCTCGTGAGATAGTGTGCCAGCTGTTTACA-TTGCCGTTG-CGTTTCCGAG 366 consensus_8656#1 AGTTAAGCACCTCCTCNGTGAGCATANGTGTGGCCCAGAACTGGTGTTAACAATTTGGCC 380 ** * * *** * * ** * * * * * ** *** * ** * consensus_8656#0 AACGTCCCGTTTCCGATTGCACGCATTAATCACACCACACTTCCGTGTGCGTTTTTTTTT 463 consensus_8656#2 AACGTCCCGTTTCCGATTGCACGCATTAATCACACCACACTTCCGTGTGCGTTTTTTTTT 426 consensus_8656#1 GGTNTGGCGGTTTNCNCCGGAGGAAACGGTTGCCACTTTTTCCGATATGCGACGGCCTTA 440 * ** ** * * * * * * * * * * **** ** consensus_8656#0 TTGGGAGCGCAGTTTGTTTTTTCCCCCCATCCCGGAGTGCGAGTGCGAGGTGACGCGGTG 523 consensus_8656#2 TTGGGAGC---------------------------------------------------- 434 consensus_8656#1 AGTCACACANAAAANGTCCGTGGTGGT--------------------------------- 467 * consensus_8656#0 GAAAATTTGGATCCGGAGCGCCGAGCTGTGTGTATTGGATTCCCGCTGGCTGACGAAAAA 583 consensus_8656#2 ------------------------------------------------------------ consensus_8656#1 ------------------------------------------------------------ consensus_8656#0 GCCCTGCGCCATTACGTTGTAAACAAAGCCGTCGGTCGTTCGGTGTGTGCGTGTGTGTGT 643 consensus_8656#2 ------------------------------------------------------------ consensus_8656#1 ------------------------------------------------------------ consensus_8656#0 GTGTGTGCAGTGCGGTTACACGAAAGGTGCGTCTCTTGGAGGGTGCAGTGCGCGTGTGTG 703 consensus_8656#2 ------------------------------------------------------------ consensus_8656#1 ------------------------------------------------------------ consensus_8656#0 AGTGAAAGTCTTT 716 consensus_8656#2 ------------- consensus_8656#1 ------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||