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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8670#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1080 fasta sequence
[CCGGGAAGCGATGAAGAGCAAGAAACCGACCTACCCGTCGAAGCAGTTCCTCAAGAGCTACTTCAGCTCGTTCAACAACGATCCGATCGGCAAGCTGGTCGTGGCCAGCACGGAACAGAAGGGTTTCATCAAGGCAAAGGCCCTGTTCGACAGCGGCGAGTACGAGGGCATTGTGGCGGCCTGCACCGAGGAGTTGGAGAAGAGCGAGTCCGAGTCGGAGTACAAGCTGGAGGCGCTGCTGCTCCGCGGCACCTTCTACAACCTGATCGCCTGCTACGAGGAGGCGAAACAGGACCTGGACGCGGTAATTGAGCTGGAAACGGCGGACAAGCGGCTCCGCTCGAACGCCCTCATCAAGCGGGCCTCGCTGGCCATGCAAACGGAGCCGGATTCACCGGGCGAATGCTTCAAGTACTTTGCGCGCGCCGAAACGATCGACAGCACGAACGGGGACATCTTCCATCACCGCGGCCAGGTGTACATACTGACCGACCGGATGGACGATGCGATCGCGGACTTTGAGCGAGCGTACCAGCTGTGCCCCACGTCCGGCATCATTGCGACGCACCTGTGCTACGCCTCGTACCGGCAGGC-GGCCC-AAAACC-GGGACG-AATCGGCCATCG-GGCGCATCCGCAAGCGGTTCAAC--GAGATACTGGACCAGTACGCGGACTGCGTCGAGTGTTACAGCATCCTCGCCCAGGTACTGACCGAGGAGCAGAAGTTCGACGAAGCGGACAGCTGCTTCGCCCGGGCACTGAAGGTCGAGCCGGACAATGCGCAGATCTACGTGCACCGGGGG-CT-GCTGCAGCTGCAGTGGAAGGGCGACATCGACGAGGGCGTGAAGCTGATCAAGAAAGCAATACAGATCGATGGCAAGTGCGAGTTTGCGTACGAAACGCTCGGCACGATCGANGTGCAGCGCGGCAATCTGGTCGAGGCGATCAAGCTGTTCGAGCGGGCGATCGAGCTGGCGCGCACGGAGATGAGCCTGGTGCATCTGTACTCGCTGAAGGATGCGGCGGTCGCGCAGGTGGACGTGGCGAAGAACATGGGCTTGAGTATTAGCAACATTTCAGCCGA]
[+] EMBL BM638239 [CCGGGAAGCGATGAAGAGCAAGAAACCGACCTACCCGTCGAAGCAGTTCCTCAAGAGCTACTTCAGCTCGTTCAACAACGATCCGATCGGCAAGCTGGTCGTGGCCAGCACGGAACAGAAGGGTTTCATCAAGGCAAAGGCCCTGTTCGACAGCGGCGAGTACGAGGGCATTGTGGCGGCCTGCACCGAGGAGTTGGAGAAGAGCGAGTCCGAGTCGGAGTACAAGCTGGAGGCGCTGCTGGTCCGCGGCACCTTCTACAACCTGATCGCCTGCTACGAGGAGGCGAAACAGGACCTGGACGCGGTAATTGAGCTGGAAACGGCGGACAAGCGGCTCCGCTCGAACGCCCTCATCAAGCGGGCCTCGCTGGCCATGCAAACGGAGCCGGATTCACCGGGCGAATGCTTCAAGTACTTTGCGCGCGCCGAAACGATCGACAGCACGAACGGGGACATCTTCCATCACCGCGGCCAGGTGTACATACTGACCGACCGGATGGACGATGCGATCGCGGACTTTGAGCGAGCGTACCAGCTGTGCCCCACGTCCGGCATCATTGCGACGCACCTGTGCTACGCCTCGTACCGGCAGGCGGGCCCAAAAACC GGGACG AATCGGC ]
[+] EMBL AL695359 [ cccgagntTTTCTCAAGAGCTACTTCAGCTCGTTCAACAACGATCCGATCGGCAAGCTGGTCGTGGCCAGCACGGAACAGAAGGGTTTCATCAAGGCAAAGGCCCTGTTCGACAGCGGCGAGTACGAGGGCATTGTGGCGGCCTGCACCGAGGAGTTGGAGAAGAGCGAGTCCGAGTCGGAGTACAAGCTGGAGGCGCTGCTGCTCCGCGGCACCTTCTACAACCTGATCGCCTGCTACGAGGAGGCGAAACAGGACCTGGACGCGGTAATTGAGCTGGAAACGGCGGACAAGCGGCTCCGCTCGAACGCCCTCATCAAGCGGGCCTCGCTGGCCATGCAAACGGAGCCGGATTCACCGGGCGAATGCTTCAAGTACTTTGCGCGCGCCGAAACGATCGACAGCACGAACGGGGACATCTTCCATCACCGCGG CAGGTGTACA ]
[+] EMBL BX622869 [ ATCAANGCGAAGGCCCTGTTCGACAGCGCCGAGTACGAGGGCATTGTGGCGGCCTGTACCGAGGAGTTGGAGAAGAGCGAGTCCGAGTCGGAGTACAAGCTGGAGGCGCTACTCCTCCGCGGCACCTTCTACAACCTGATCGCCTGCTACGAGGAGGCGAAACAGGACCTGGACGCGGTAATTGAGCTGGAAACGGCGGACAAGCGGCTCCGCTCGAACGCCCTCATCAAGCGGGCCTCGCTGGCCATGCAAACGGAGCCGGATTCACCGGGCGAATGCTTCAAGTACTTTGCGCGCGCCGAAACGATCGACAGCACGAACGGGGACATCTTCCATCACCGCGGGCAGGTGTACATACTGACCGACCGGATGGACGATGCGATCGCGGACTTTGAGCGTGCGTACCAGCTGTGCCCCACGTCCGGCATCATTGCGACGCACCTGTGCTACGCCTCGTACCGGCAGGC GGCCC AAAACC GAGACG AATCGGCGATCG GGCGCATCCGCAAGCGGTTCAAC GAGATACTGGACCAGTACGCGGACTGCGTCGAGTGTTACAGCATCCTCGCCCAGGTACTGACCGAGGAGCAGAAGTTCGACGAAGCGGACAGCTGCTTCGCCCGGGCACTGAAGGTCGAGCCGGATAATGCGCAGATCTACGTGCACCGGGGG CT GCTGCAGCTGCAGTGGAAGGGCGACATCGACGAGGGCGTGAAGCTGATCAAGAAAGCAATACAGATCGATGGCAAGTGCGAGTTTGCGTACGAAACGCTCGGCACGATCGANGTGCAGCGCGGCAATCTGGTCGANGCGATCAAGCTGTTCGAGCGGGCGATCGAG ]
[+] EMBL BX621505 [ GGCCCTGTTCGACAGCGCCGAGTACGAGGGCATTGTGGCGGCCTGTACCGAGGAGTTGGAGAAGAGCGAGTCCGAGTCGGAGTACAAGCTGGAGGCGCTACTCCTCCGCGGCACCTTCTACAACCTGATCGCCTGCTACGAGGAGGCGAAACAGGACCTGGACGCGGTAATTGAGCTGGAAACGGCGGACAAGCGGCTCCGCTCGAACGCCCTCATCAAGCGGGCCTCGCTGGCCATGCAAACGGAGCCGGATTCACCGGGCGAATGCTTCAAGTACTTTGCGCGCGCCGAAACGATCGACAGCACGAACGGGGACATCTTCCATCACCGCGGGCAGGTGTACATACTGACCGACCGGATGGACGATGCGATCGCGGACTTTGAGCGTGCGTACCAGCTGTGCCCCACGTCCGGCATCATTGCGACGCACCTGTGCTACGCCTCGTACCGGCAGGC GGCCC AAAACC GAGACG AATCGGCGATCG GGCGCATCCGCAAGCGGTTCAAC GAGATACTGGACCAGTACGCGGACTGCGTCGAGTGTTACAGCATCCTCGCCCAGGTACTGACCGAGGAGCAGAAGTTCGACGAAGCGGACAGCTGCTTCGCCCGGGCACTGAAGGTCGAGCCGGACAATGCGCAGATCTACGTGCACCGGGGG CT GCTGCAGCTGCAGTGGAAGGGCGACATCGACGANGGCGTGAAGCTGATCAAGAAAGCAATACAGATCGATGGCAAGTGCGAGTTTGCGTACGAAACGCTCGGCACGATCGANGTGCAGCGCGGCAATCTG ]
[+] EMBL BM596273 [ cCGGCGGACAAGCGGCTCCGCTCGAACGCCCTCATCAAGCGGGCCTCGCTGGCCATGCAAACGGAGCCGGATTCACCGGGCGAATGCTTCAAGTACTTTGCGCGCGCCGAAACGATCGACAGCACGAACGGGGACATCTTCCATCACCGCGGCCAGGTGTACATACTGACCGACCGGATGGACGATGCGATCGCGGACTTTGAGCGAGCGTACCAGCTGTGCCCCACGTCCGGCATCATTGCGACGCACCTGTGCTACGCCTCGTACCGGCAGGC GGCCC AAAACC GGGACG AATCGGCCATCG GGCGCATCCGCAAGCGGTTCAAC GAGATACTGGACCAGTACGCGGACTGCGTCGAGTGTTACAGCATCCTCGCCCAGGTACTGACCGAGGAGCAGAAGTTCGACGAAGCGGACAGCTGCTTCGCCCGGGCACTGAAGGTCGAGCCGGACAATGCGCAGATCTACGTGCACCGGGGG CT GCTGCAGCTGCAGTGGAAGGGCGACATCGACGAGGGCGTGAAGCTGATCAAGAAAGCAATACAGATCGATGGCAAGTGCGAGTTTGCGTACGAAACGCTCGGCACGATCGAGGTGCAGCGCGGCAATCTGGTCGAGGCGATCAAGCTGTTCGAGCGGGCG ]
[-] EMBL BM590848 [ CTCCGCTCGAACGCCCTCATCAAGCGGGCCTCGCTGGCCATGCAAACGGAGCCGGATTCACCGGGCGAATGCTTCAAGTACTTTGCGCGCGCCGAAACGATCGACAGCACGAACGGGGACATCTTCCATCACCGCGGCCAGGTGTACATACTGACCGACCGGATGGACGATGCGATCGCGGACTTTGAGCGAGCGTACCAGCTGTGCCCCACGTCCGGCATCATTGCGACGCACCTGTGCTACGCCTCGTACCGGCAGGC GGCCC AAAACC GGGACG AATCGGCCATCG GGCGCATCCGCAAGCGGTTCAAC GAGATACTGGACCAGTACGCGGACTGCGTCGAGTGTTACAGCATCCTCGCCCAGGTACTGACCGAGGAGCAGAAGTTCGACGAAGCGGACAGCTGCTTCGCCCGGGCACTGAAGGTCGAGCCGGACAATGCGCAGATCTACGTGCACCGGGGG CT GCTGCAGCTGCAGTGGAAGGGCGgcccgg ]
[+] EMBL BM614314 [ ccgGAAACGATCGACAGCACGAACGGGGACATCTTCCATCACCGCGGCCAGGTGTACATACTGACCGACCGGATGGACGATGCGATCGCGGACTTTGAGCGAGCGTACCAGCTGTGCCCCACGTCCGGCATCATTGCGACGCACCTGTGCTACGCCTCGTACCGGCAGGC GGCCC AAAACC GGGACG AATCGGCCATCG GGCGCATCCGCAAGCGGTTCAAC GAGATACTGGACCAGTACGCGGACTGCGTCGAGTGTTACAGCATCCTCGCCCAGGTACTGACCGAGGAGCAGAAGTTCGACGAAGCGGACAGCTGCTTCGCCCGGGCACTGAAGGTCGAGCCGGACAATGCGCAGATCTACGTGCACCGGGGG CT GCTGCAGCTGCAGTGGAAGGGCGACATCGACGAGGGCGTGAAGCTGATCAAGAAAGCAATACAGATCGATGGCAAGTGCGAGTTTGCGTACGAAACGCTCGGCACGATCGAGGTGCAGCGCGGCAATCTGGTCGAGGCGATCAAGCTGTTCGAGCGGGCGATCGAGCTGGCGCGCACGGAGATGAGCCTGGTGCATCTGTACTCGCTGAAGGATGCGGCGGTCGCGCAGGTGGACGTGGCGAAGAACATGGGCTTGAGTATTAGCAACATTTCAGCCGA]
[+] EMBL BX619842 [ tTACCGGCAGGC GGCCC AAAACCGGGGACGNAATCGGCCATCGAGGCGCATCCGCAAGCGGTTCAACNNGGNATACTGGACCAGTACGCGGACTGCGTCGAGTGTTACAGCATCCTCGCCCAGGTACTGACCGAGGAGCAGAAGTTCGACGAAGCGGACAGCTGCTTCGCCCGGGCACTGAAGGTCGAGCCGGACAATGCGCAGATCTACGTGCACCGGGGGCCTGGCTGC ]
consensusID : consensus_8670#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 415 fasta sequence
[CGCCGAGTTAAACGGGACATCTTCCATCACCGCGGCAGGTGTACATACTGACCGACCGGATGGACGATGCGATCGCGGACTTTGAGCGAGCGTACCAGCTGTGCCCCACGTCCGGCATCATTGCGACGCACCTGTGCTACGCCTCGTACCGACAGGCGGCCCAAAACCGGGACGAATCGGCCATCGGGCGCATCCGCAAGCGGTTCAACGAGATACTGGACCAGTACGCGGACTGCGTCGAGTGTTACAGCATCCTCGCCCAGGTACTGACCGAGGAGCAGAAGTTCGACGAAGCGGACAGCTGCTTCGCCCGGGCACTGAAGGTCGAGCCGGACAATGCGCAGATCTACGTGCACCGGGGGCTGCTGCAGCTGCAGTGGAAGGGCGACATCGACGAGGGCGTGAAGCTGATCAA]
[+] EMBL AL932305 [CGCCGAGTTAAACGGGACATCTTCCATCACCGCGGCAGGTGTACATACTGACCGACCGGATGGACGATGCGATCGCGGACTTTGAGCGAGCGTACCAGCTGTGCCCCACGTCCGGCATCATTGCGACGCACCTGTGCTACGCCTCGTACCGACAGGCGGCCCAAAACCGGGACGAATCGGCCATCGGGCGCATCCGCAAGCGGTTCAACGAGATACTGGACCAGTACGCGGACTGCGTCGAGTGTTACAGCATCCTCGCCCAGGTACTGACCGAGGAGCAGAAGTTCGACGAAGCGGACAGCTGCTTCGCCCGGGCACTGAAGGTCGAGCCGGACAATGCGCAGATCTACGTGCACCGGGGGCTGCTGCAGCTGCAGTGGAAGGGCGACATCGACGAGGGCGTGAAGCTGATCAA]
[+] EMBL BM625522 [ CCGACCGGATGGACGATGCGATCGCGGACTTTGAGCGAGCGTACCAGCTGTGCCCCACGTCCGGCATCATTGCGACGCACCTGTGCTACGCCTCGTACCGACAGGCGGCCCAAAACCGGGACGAATCGGCCATCGGGCGCATCCGCAAGCGGTTCAACGAGATACTGGACCAGTACGCGGACTGCGTCGAGTGTTACAGCA ]
consensusID : consensus_8670#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 406 fasta sequence
[TGGATGACCTAAATTAAATCCCGGCTCGTTTTATTCGATTGTTGCACACAACGTAATTCAAGCATAACACCGGGAGACGAAAGAAACAGAAAACAAAACTGGTGATATGGAACACATTGGGCACACACACCACATTAGGTGAGCCAATGCAATTGCATACAACCATGACTGCTTGCTATTAATGCTTCACGCTAAACGATAAATTATAAACGTATTGGGGATGGGGGGAGGGGAGTCCTCGGAATTATGTGGAATCGATTCCACCCCACAAGCGCACGCCGCGGCAGCAGCTTTCCTTACAACGCTTTAACATACAAAACCAAGGCCTGCTTCTCGTGGGTACGTACTGGTACACTGCGCTTAAAAGTTCGGCTGAATGGTGCTAATACTCAAGCCCATGTTCTTC]
[+] EMBL BM633560 [TGGATGACCTAAATTAAATCCCGGCTCGTTTTATTCGATTGTTGCACACAACGTAATTCAAGCATAACACCGGGAGACGAAAGAAACAGAAAACAAAACTGGTGATATGGAACACATTGGGCACACACACCACATTAGGTGAGCCAATGCAATTGCATACAACCATGACTGCTTGCTATTAATGCTTCACGCTAAACGATAAATTATAAACGTATTGGGGATGGGGGGAGGGGAGTCCTCGGAATTATGTGGAATCGATTCCACCCCACAAGCGCACGCCGCGGCAGCAGCTTTCCTTACAACGCTTTAACATACAAAACCAAGGCCTGCTTCTCGTGGGTACGTACTGGTACACTGCGCTTAAAAGTTCGGCTGAATGGTGCTAATACTCAAGCCCATGTTCTTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8670#0 CCGGGAAGCGATGAAGAGCAAGAAACCGACCTACCCGTCGAAGCAGTTCCTCAAGAGCTA 60
consensus_8670#1 ------------------------------------------------------------
consensus_8670#2 ------------------------------------------------------------
consensus_8670#0 CTTCAGCTCGTTCAACAACGATCCGATCGGCAAGCTGGTCGTGGCCAGCACGGAACAGAA 120
consensus_8670#1 ------------------------------------------------------------
consensus_8670#2 ------------------------------------------------------------
consensus_8670#0 GGGTTTCATCAAGGCAAAGGCCCTGTTCGACAGCGGCGAGTACGAGGGCATTGTGGCGGC 180
consensus_8670#1 ------------------------------------------------------------
consensus_8670#2 ------------------------------------------------------------
consensus_8670#0 CTGCACCGAGGAGTTGGAGAAGAGCGAGTCCGAGTCGGAGTACAAGCTGGAGGCGCTGCT 240
consensus_8670#1 ------------------------------------------------------------
consensus_8670#2 ------------------------------------------------------------
consensus_8670#0 GCTCCGCGGCACCTTCTACAACCTGATCGCCTGCTACGAGGAGGCGAAACAGGACCTGGA 300
consensus_8670#1 ------------------------------------------------------------
consensus_8670#2 ------------------------------------------------------------
consensus_8670#0 CGCGGTAATTGAGCTGGAAACGGCGGACAAGCGGCTCCGCTCGAACGCCCTCATCAAGCG 360
consensus_8670#1 ------------------------------------------------------------
consensus_8670#2 ------------------------------------------------------------
consensus_8670#0 GGCCTCGCTGGCCATGCAAACGGAGCCGGATTCACCGGGCGAATGCTTCAAGTACTTTGC 420
consensus_8670#1 ------------------------------------------------------------
consensus_8670#2 ------------------------------------------------------------
consensus_8670#0 GCGCGCCGAAACGATCGACAGCACGAACGGGGACATCTTCCATCA--CCGCGGCCAGGTG 478
consensus_8670#1 ---------------CGCCGAGTTAAACGGG-ACATCTTCCATCA--CCGCGGC-AGGTG 41
consensus_8670#2 -----------------------------TGGATGACCTAAATTAAATCCCGGCTCGTTT 31
* * * * ** * * **** * *
consensus_8670#0 TACATACTGACCGACCGGATGGACGATGCGATCGCGGACTTTGAGCGAGCGTACCAGCTG 538
consensus_8670#1 TACATACTGACCGACCGGATGGACGATGCGATCGCGGACTTTGAGCGAGCGTACCAGCTG 101
consensus_8670#2 TATTCGATTGTTGCACACA-ACGTAATTCAAGCATA-ACACCGGGAGA-CGAAAGAAACA 88
** * * * * ** * * * ** * * ** ** * *
consensus_8670#0 TGCCCCACGTCCGGCATCATTGCGACGCACCTGTGCTACGCCTCGTACCGGCAGGCGGCC 598
consensus_8670#1 TGCCCCACGTCCGGCATCATTGCGACGCACCTGTGCTACGCCTCGTACCGACAGGCGGCC 161
consensus_8670#2 GAAAACAAAACTGGTGATATGG-AACACATTGGGCACACACACCACATT---AGGTGAGC 144
** * ** ** * ** ** * ** * * * *** * *
consensus_8670#0 CAAAACCGGGACGAATCGGCCATCGGGCGCAT-CCGCAAGCGGTTCA-ACGAGATACTGG 656
consensus_8670#1 CAAAACCGGGACGAATCGGCCATCGGGCGCAT-CCGCAAGCGGTTCA-ACGAGATACTGG 219
consensus_8670#2 CAATGCAATTGCATA-CAACCAT-GACTGCTTGCTATTAATGCTTCACGCTAAACGATAA 202
*** * * * * **** * ** * * * * **** * * * *
consensus_8670#0 ACCAGTACGCGGACTGCGT-CGAGTGTTACAGCATCCTCGCCCAGGTACTGACCGAGGAG 715
consensus_8670#1 ACCAGTACGCGGACTGCGT-CGAGTGTTACAGCATCCTCGCCCAGGTACTGACCGAGGAG 278
consensus_8670#2 ATTA-TAAACGTATTGGGGATGGGGGGAGGGGAGTCCTCG---GAATTATGTGGAATCGA 258
* * ** ** * ** * * * * * ****** * ** *
consensus_8670#0 CAGAAGTTCGACGAAGCGGACAGCTGCTTCGCCCGGGCACTGAAGGTCGAGCCGGACAAT 775
consensus_8670#1 CAGAAGTTCGACGAAGCGGACAGCTGCTTCGCCCGGGCACTGAAGGTCGAGCCGGACAAT 338
consensus_8670#2 TTCCACCCCACAAGCGCACGCCGCGGCAGCAGCTTTCCTTACAACGCTTTAACATACAAA 318
* * ** * ** ** * * * ** * * ****
consensus_8670#0 GCGCAGATCTACGTGCACCGGGGGCTGCTGCAGCTGCAGTGGAAGGGCGACATCGACGAG 835
consensus_8670#1 GCGCAGATCTACGTGCACCGGGGGCTGCTGCAGCTGCAGTGGAAGGGCGACATCGACGAG 398
consensus_8670#2 ACCAAGGCCTGCTTCT--CGTGGGTACGTACTGGTACACTGCGCTTAAAAGTTCGGCTGA 376
* ** ** * * ** *** * * * * ** ** * *** *
consensus_8670#0 GGCGTGAAGCTGATCAAGAAAGCAATACAGATCGATGGCAAGTGCGAGTTTGCGTACGAA 895
consensus_8670#1 GGCGTGAAGCTGATCAA------------------------------------------- 415
consensus_8670#2 ATGGTGCTAATACTCAAGCCCATGTTCTTC------------------------------ 406
*** * ****
consensus_8670#0 ACGCTCGGCACGATCGANGTGCAGCGCGGCAATCTGGTCGAGGCGATCAAGCTGTTCGAG 955
consensus_8670#1 ------------------------------------------------------------
consensus_8670#2 ------------------------------------------------------------
consensus_8670#0 CGGGCGATCGAGCTGGCGCGCACGGAGATGAGCCTGGTGCATCTGTACTCGCTGAAGGAT 1015
consensus_8670#1 ------------------------------------------------------------
consensus_8670#2 ------------------------------------------------------------
consensus_8670#0 GCGGCGGTCGCGCAGGTGGACGTGGCGAAGAACATGGGCTTGAGTATTAGCAACATTTCA 1075
consensus_8670#1 ------------------------------------------------------------
consensus_8670#2 ------------------------------------------------------------
consensus_8670#0 GCCGA 1080
consensus_8670#1 -----
consensus_8670#2 -----
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||