These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8672#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 693 fasta sequence [AGTCCCCGAGGT-T-ATTCGTTCGCATAGTTTGGTTTAGTCGCGAGTGTGTTCTATTCTTGTCTACGTATTTCGCAAACATGTTTAGCAAAGTGCTTAT-CCTGG-CCGCGGTCACCGTGTGTAGTGTGCTGGCCGCTCCCCAGAAGCGTCTCGGTGGACCGCTGCCGCTCGGTACGGCCGAATCGCAGGCCGTCATCCT-GGCGCAGGAGCAGAACCACGACCCGAGCGGTGCGTACAACTATCGGTACGAGACGAGCAACGGCATCGCGGCGCAGCAGACCAGCTACGATGGCGCTAATGCGG-CGGGCGAGTACTCGTACACCGGGCCGGACGGTGTGCTGTACCGGGTGGCGTACAATGCCGACACGTACGGGTTCCAGCCGCAGGGTGCCCATCTGCCGGTCGAGCCGCCAGTACCGGACCATGTGCTGAAGTCGCTCGAGGAGATCCGCGCCAATCCGCCGCGTGATCAGGAGTTCAATCTGGCCGCGCTCGATGCACAGATCGCACGGCTACGGGCCAC-TCTGGGCTAA-GCC-AACGGAGCACAGCCAACCAACACAAATGACAAGCACATGGTTGTGATCGAGATGGTACCACAGGGACAGGGCAGGAAGGGTTGATTGGTTTGTTGAAATGGTGTCCGCTGATGTTTATGTTACAGTTACAACATTTAAAATAACAATAAAAATGTTTCGA] [+] EMBL AL695634 [ TCCCCGAGGT T ATTCGTTCGCATAGTTTGGTTTAGTCGCAAGTGTGTTCTATTCTTGTCTACGTATTTCGCAAACATGTTTAGCAAAGTGCTTAT CCTGG CCGCGGTCACCGTGTGTAGTGTGCTGGCCGCTCCCCAGAAGCGTCTCGGTGGACCGCTGCCGCTCGGTACGGCCGAATCGCAGGCCGTCATCCT GGCGCAGGAGCAGAACCACGACCCGAGCGGTGCGTACAACTATCGGTACGAGACGAGCAACGGCATCGCGGCGCAGCAGACCAGCTACGATGGCGCTAATGCGGCCGGGCGAGTACTCGTACACCGGGCCGGACGGTGTGCTGTACCGGGTGGCGTACAATGCCGACACGTACGGGTTCCAGCCGCAGGGTGCCCATCTGCCGGTCGAGCCGCCAGTACCGGACCATGTGCTGAAGTCGCTCGAGGAGATCCG GCCAATCCG CGCGTGATCAGGAGTTCAATCTGGCCGCGCTCGATGCACAGATCGCACGGCTACGGGCCACATCTGGGCTAACGCC AACGGAGCACAG ] [+] EMBL AL929824 [agatCCCGAGGTATCGTTCGTTCGCATAGTTTGGTTTAGTCGCGAGTGTGTTCTATTCTTGTCTACGTATTTCGCAAACATGTTTAGCAAAGTGCTTAT CCTGG CCGCGGTCACCGTGTGTAGTGTGCTGGCCGCTCCCCAGAAGCGTCTCGGTGGACCGNTG CGCTCGGTACGG CGAATCGCAGG CGTCATCCTGGGCGCAGGAGCAGAACCACGA CCGAGCGGTGCGTACAACTATCGGTACGAGACGAGC ACGGCATCGCGGCGCAGCAGACCAGCTACGATGGCGCTAATGCGG CGGGCGAGTACTCGTACACCGGGCCGGACGGTGTGCTGTACCGGGTGGCGTACAATGCCGACACGTACGGGTTCCAGCCGCAGGGTGCCCATCTGCCGGTCGAGCCGCCAGTACCGGACCATGTGCTGAAGTCGCTCGAGGAGATCCGCGCCAATCCGCCGCGTGATCAGGAGTTCAATCTGGCCGCGCTCGATGCACAGATCGCACGGCTACGGGCCAC TCTGGGC ] [+] EMBL BX626051 [ CGCATAGTTTGGTTTAGTCGCAAGTGTGTTCTATTCTTGTCTACGTATTTCGCAAACATGTTTAGCAAAGTGCTTAT CCTGG CCGCGGTCACCGTGTGTAGTGTGCTGGCCGCTCCCCAGAAGCGTCTCGGTGGACCGCTGCCGCTCGGTACGGCCGAATCGCAGGCCGTCATCCT GGCGCAGGAGCAGAACCACGACCCGAGCGGTGCGTACAACTATCGGTACGAGACGAGCAACGGCATCGCGGCGCAGCAGACCAGCTACGATGGCGCTAATGCGG CGGGCGAGTACTCGTACACCGGGCCGGACGGTGTGCTGTACCGGGTGGCGTACAATGCCGACACGTACGGGTTCCAGCCGCAGGGTGCCCATCTGCCGGTCGAGCCGCCAGTACCGGACCATGTGCTGAAGTCGCTCGAGGAGATCCGCGCCAATCCGCCGCGTGATCAGGAGTTCAATCTGGCCGCGCTCGATGCACAGATCGCACGGCTACGGGCCAC TCTGGGCTAA GCC AACGGAGCACAGCCAACCAACACAAATGACAAGCACATGGTTGTGATCGAGATGGTACCACAGGGACAGGGCAGGAAGGGTTGATTGGTTTGTTGAAATGGTGTCCGCTGATGTTTATGTTACAGTTACAACATTTAAAATAACAATAAAAATGTTTCGA] [+] EMBL BX626052 [ AGTTTGGTTTAGTCGCANGTGTGTTCTATTCTTGTCTACGTATTTCGCAAACATGTTTAGCAAAGTGCTTAT CCTGG CCGCGGTCACCGTGTGTAGTGTGCTGGCCGCTCCCCAGAAGCGTCTCGGTGGACCGCTGCCGCTCGGTACGGCCGAATCGCAGGCCGTCATCCT GGCGCAGGAGCAGAACCACGACCCGAGCGGTGCGTACAACTATCGGTACGAGACGAGCAACGGCATCGCGGCGCAGCAGACCAGCTACGATGGCGCTAATGCGG CGGGCGAGTACTCGTACACCGGGCCGGACGGTGTGCTGTACCGGGTGGCGTACAATGCCGACACGTACGGGTTCCAGCCGCAGGGTGCCCATCTGCCGGTCGAGCCGCCAGTACCGGACCATGTGCTGAAGTCGCTCGAGGAGATCCGCGCCAATCCGCCGCGTGATCAGGAGTTCAATCTGGCCGCGCTCGATGCACAGATCGCACGGCTACGGGCCAC TCTGGGCTAA GCC AACGGAGCACAGCCAACCAACACAAATGACAAGCACATGGTTGTGATCGAGATGGTACCACAGGGACAGGGCAGGAAGGGTTGATTGGTTTGTTGAAATGGTGTCCGCTGATGTTTATGTTACAGTTACAACATTTAAAATAACAATAAAAATGTTTCGA] [+] EMBL BX623567 [ GTTTAGTCGCGAGTGTGTTCTATTCTTGTCTACGTATTTCGCAAACATGTTTAGCAAAGTGCTTAT CCTGG CCGCGGTCACCGTGTGTAGTGTGCTGGCCGCTCCCCAGAAGCGTCTCGGTGGACCGCTGCCGCTCGGTACGGCCGAATCGCAGGCCGTCATCCT GGCGCAGGAGCAGAACCACGACCCGAGCGGTGCGTACAACTATCGGTACGAGACGAGCAACGGCATCGCGGCGCAGCAGACCAGCTACGATGGCGCTAATGCGG CGGGCGAGTACTCGTACACCGGGCCGGACGGTGTGCTGTACCGGGTGGCGTACAATGCCGACACGTACGGGTTCCAGCCGCAGGGTGCCCATCTGCCGGTCGAGCCGCCAGTACCGGACCATGTGCTGAAGTCGCTCGAGGAGATCCGCGCCAATCCGCCGCGTGATCAGGAGTTCAATCTGGCCGCGCTCGATGCACAGATCGCACGGCTACGGGCCAC TCTGGGCTAA GCC AACGGAGCACAGCCAACCAACACAAATGACAAGCACATGGTTGTGATCGAGATGGTACCACAGGGACAGGGCAGGAAGGGTTGATTGGTTTGTTGAAATGGTGTCCGCTGATGTTTAT ] [+] EMBL AL692574 [ cccccgaggTTAGTCGCGAGTGTGTTCTATTCTTGTCTACGTATTTCGCAAACATGTTTAGCAAAGTGCTTAT CCTGG CCGCGGTCACCGTGTGTAGTGTGCTGGCCGCTCCCCAGAAGCGTCTCGGTGGACCGCTGCCGCTCGGTACGGCCGAATCGCAGGCCGTCATCCT GGCGCAGGAGCAGAACCACGACCCGAGCGGTGCGTACAACTATCGGTACGAGACGAGCAACGGCATCGCGGCGCAGCAGACCAGCTACGATGGCGCTAATGCGG CGGGCGAGTACTCGTACACCGGGCCGGACGGTGTGCTGTACCGGGTGGCGTACAATGCCGACACGTACGGGTTCCAGCCGCAGGGTGCCCATCTGCCGGTCGAGCCG CAGTACCGGACCATGTGCTGAAGTCGCTCGAGGAGATCCGCGCCAATCCGCCGCGTGATCAGGAGTTCAATCTGGCCGCGCTCGATGCACAGATCGCACGG TACGGGCCAC TCTGGGCTAA GCCAAACGGAGCACAG CAACa ] [+] EMBL BX628244 [ AGTCGCGAGTGTGTTCTATTCTTGTCTACGTATTTCGCAAACATGTTTAGCAAAGTGCTTAT CCTGG CCGCGGTCACCGTGTGTAGTGTGCTGGCCGCTCCCCAGAAGCGTCTCGGTGGACCGCTGCCGCTCGGTACGGCCGAATCGCAGGCCGTCATCCT GGCGCAGGAGCAGAACCACGACCCGAGCGGTGCGTACAACTATCGGTACGAGACGAGCAACGGCATCGCGGCGCAGCAGACCAGCTACGATGGCGCTAATGCGG CGGGCGAGTACTCGTACACCGGGCCGGACGGTGTGCTGTACCGGGTGGCGTACAATGCCGACACGTACGGGTTCCAGCCGCAGGGTGCCCATCTGCCGGTCGAGCCGCCAGTACCGGACCATGTGCTGAAGTCGCTCGAGGAGATCCGCGCCAATCCGCCGCGTGATCAGGAGTTCAATCTGGCCGCGCTCGATGCACAGATCGCACGGCTACGGGCCAC TCTGGGCTAA GCC AACGGAGCACAGCCAACCAACACAAATGACAAGCACATGGTTGTGATCGAGATGGTACCACAGGGACAGGGCAGGAAGGGTTGATTGGTTTGTTGAAATGGTGTCCGCTGATGTTTATGTTACAGTTACAACATTTAAAATAACAATAAAAATGTTTCGA] [+] EMBL BX619959 [ TTAGNCAAGTGCTTATACCTGGTCCGCGGTCACCGTGTGTAGTGTGCTGGCCGCTCCCCAGAAGCGTCTCGGTGGACCGCTGCCGCTCGGTACGGCCGAATCGCAGGCCGTCATCCT GGCGCAGGAGCAGAACCACGACCCGAGCGGTGCGTACAACTATCGGTACGAGACGAGCAACGGCATCGCGGCGCAGCAGACCAGCTACGATGGCGCTAATGCGG CGGGCGAGTA ] [+] EMBL BX624115 [ GTAGTGTGCTGGCCGCTCCCCAGAAGCGTCTCGGTGGACCGCTGCCGCTCGGTACGGCCGAATCGCAGGCCGTCATCCT GGCGCAGGAGCAGAACCACGACCCGAGCGGTGCGTACAACTATCGGTACGAGACGAGCAACGGCATCGCGGCGCAGCAGACCAGCTACGATGGCGCTAATGCGG CGGGCGAGTACTCGTACACCGGGCCGGACGGTGTGCTGTACCGGGTGGCGTACAATGCCGACACGTACGGGTTCCAGCCGCAGGGTGCCCATCTGCCGGTCGAGCCGCCAGTACCGGACCATGTGCTGAAGTCGCTCGAGGAGATCCGCGCCAATCCGCCGCGTGATCAGGAGTTCAATCTGGCCGCGCTCGATGCACAGATCGCACGGCTACGGGCCAC TCTGGGCTAA GCC AACGGAGCACAGCCAACCAACACAAATGACAAGCACATGGTTGTGATCGAGATGGTACCACAGGGACAGGGCAGGAAGGGTTGATTGGTTTGTTGAAATGGTGTCCGCTGATGTTTATGTTACAGTTACAACATTTAAAATAACAATAAAAATGTTTCGA] [+] EMBL BX626042 [ ATCGCGGCGCAGCAGACCAGCTACGATGGNGCTANTGCGG CGGGCGAGTACTCGNACACCGGGCCGGACGGTGTGCTGTACCGGGTGGNGTACAATGCCNACACGTACGGGTTCCANCCGCAGGGTGCCCATCTGCCGGTCGAGCCGCCANTACCGGACCATGTGCTGAAGTCNCTCNAGGAGATCCGCGCCAATCCGCCGCNTGATCAGGAGTTCNATCTGGCCGCGCTCGATGCACAGATCGCACGGCTACGGGCCAC TCTGGGCTAA GCC AACGGANCACAGCCAACCAACACNAATGACAAGCACATGGTTGTGATCGAGATGGTACCACAG ] consensusID : consensus_8672#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 491 fasta sequence [TCGTTCGCATAGTTTGGTTTAGTCGCGAGTGTAGTTCTATTCTTGTCTACGTATTTCGCAAACATGTTTAGCAAAGTGCTTATCCTGGCCGCGGTCACCGTGTGTATTGTGCTGGCCGCTCCCCAAAACCNTCTCGGTGGACCGCTGCCGCTCGGTACGGCCAATTCGCAGGCCGTCTTCCTGGCCCAGGACCAAAACCACAACCCAACCGGTGCTTACAACTATCGGTACAAAACAACCAACGGCTTCGCGGCCCACCAAACCACCTACAATGGCCCTATTGCGGCGGGCAATTACTCTTACACCGGGCCGGACGGTTTGCTGTACCGGGTGGCTTACAATGCCAACACTTACGGTTCCCACCCGCAGGGTGCCNNTCTGCCGGTCAAGCGGCNNTTACCGAACCTTGTGCTGAATTCCCTCAAGGAGATCGCCCCATTCCGCCGCTTGATCAGGATTCCATTCTGGCCGCCCTCAATGCCCAAATCCCN] [+] EMBL BX624246 [TCGTTCGCATAGTTTGGTTTAGTCGCGAGTGTAGTTCTATTCTTGTCTACGTATTTCGCAAACATGTTTAGCAAAGTGCTTATCCTGGCCGCGGTCACCGTGTGTATTGTGCTGGCCGCTCCCCAAAACCNTCTCGGTGGACCGCTGCCGCTCGGTACGGCCAATTCGCAGGCCGTCTTCCTGGCCCAGGACCAAAACCACAACCCAACCGGTGCTTACAACTATCGGTACAAAACAACCAACGGCTTCGCGGCCCACCAAACCACCTACAATGGCCCTATTGCGGCGGGCAATTACTCTTACACCGGGCCGGACGGTTTGCTGTACCGGGTGGCTTACAATGCCAACACTTACGGTTCCCACCCGCAGGGTGCCNNTCTGCCGGTCAAGCGGCNNTTACCGAACCTTGTGCTGAATTCCCTCAAGGAGATCGCCCCATTCCGCCGCTTGATCAGGATTCCATTCTGGCCGCCCTCAATGCCCAAATCCCN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8672#0 AGTCCCCGAGGTTATTCGTTCGCATAGTTTGGTTTAGTCGCGAGTGT-GTTCTATTCTTG 59 consensus_8672#1 ---------------TCGTTCGCATAGTTTGGTTTAGTCGCGAGTGTAGTTCTATTCTTG 45 ******************************** ************ consensus_8672#0 TCTACGTATTTCGCAAACATGTTTAGCAAAGTGCTTATCCTGGCCGCGGTCACCGTGTGT 119 consensus_8672#1 TCTACGTATTTCGCAAACATGTTTAGCAAAGTGCTTATCCTGGCCGCGGTCACCGTGTGT 105 ************************************************************ consensus_8672#0 AGTGTGCTGGCCGCTCCCCAGAAGCGTCTCGGTGGACCGCTGCCGCTCGGTACGGCCGAA 179 consensus_8672#1 ATTGTGCTGGCCGCTCCCCAAAACCNTCTCGGTGGACCGCTGCCGCTCGGTACGGCCAAT 165 * ****************** ** * ******************************* * consensus_8672#0 TCGCAGGCCGTCATCCTGGCGCAGGAGCAGAACCACGACCCGAGCGGTGCGTACAACTAT 239 consensus_8672#1 TCGCAGGCCGTCTTCCTGGCCCAGGACCAAAACCACAACCCAACCGGTGCTTACAACTAT 225 ************ ******* ***** ** ****** **** * ****** ********* consensus_8672#0 CGGTACGAGACGAGCAACGGCATCGCGGCGCAGCAGACCAGCTACGATGGCGCTAATGCG 299 consensus_8672#1 CGGTACAAAACAACCAACGGCTTCGCGGCCCACCAAACCACCTACAATGGCCCTATTGCG 285 ****** * ** * ******* ******* ** ** **** **** ***** *** **** consensus_8672#0 GCGGGCGAGTACTCGTACACCGGGCCGGACGGTGTGCTGTACCGGGTGGCGTACAATGCC 359 consensus_8672#1 GCGGGCAATTACTCTTACACCGGGCCGGACGGTTTGCTGTACCGGGTGGCTTACAATGCC 345 ****** * ***** ****************** **************** ********* consensus_8672#0 GACACGTACGGGTTCCAGCCGCAGGGTGCCCATCTGCCGGTCGAGCCGCCAGTACCGGAC 419 consensus_8672#1 AACACTTACGGTTCCCACCCGCAGGGTGCCNNTCTGCCGGTCAAGCGGCNNTTACCGAAC 405 **** ***** * *** ************ ********** *** ** ***** ** consensus_8672#0 CATGTGCTGAAGTCGCTCGAGGAGATCCGCGCCAATCCGCCGCGTGATCAGGAGTTCAAT 479 consensus_8672#1 CTTGTGCTGAATTCCCTCAAGGAGATC-GCCCCATTCCGCCGCTTGATCAGGATTCCATT 464 * ********* ** *** ******** ** *** ******** ********* * ** * consensus_8672#0 CTGGCCGCGCTCGATGCACAGATCGCACGGCTACGGGCCACTCTGGGCTAAGCCAACGGA 539 consensus_8672#1 CTGGCCGCCCTCAATGCCCAAATCCCN--------------------------------- 491 ******** *** **** ** *** * consensus_8672#0 GCACAGCCAACCAACACAAATGACAAGCACATGGTTGTGATCGAGATGGTACCACAGGGA 599 consensus_8672#1 ------------------------------------------------------------ consensus_8672#0 CAGGGCAGGAAGGGTTGATTGGTTTGTTGAAATGGTGTCCGCTGATGTTTATGTTACAGT 659 consensus_8672#1 ------------------------------------------------------------ consensus_8672#0 TACAACATTTAAAATAACAATAAAAATGTTTCGA 693 consensus_8672#1 ---------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||