These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_870#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 647 fasta sequence [CCGCACAAATCGCGCTTTGTGGCGTCAAAACTTTTACACATTTAGTACAGCACAAACAAACAAACAAACACCCGCCCTCCTGGTAGAAAATCATAGTGAATCGTACGCAAACATAGTACACGTTGTCTTCACCTTCGGCTCGCGTGGGTCGGAGATTAGTATGCCCTTTAGTAGTAGCTGTAAGAGGTGATTAACAGTGCAGCATCGTGCAGCATCCGCATGTTTCCCATCGTGCTAGCAACACACTAGAAGAATTTTACTTCAGCATGAGGATGCTCTTCCTCTTCTTCCACGGCTGCCAGCCCTTAGAAAGGTTCGGTAGCTCCGCAGTGCGCTAGGCAGCGATCTTTTGCAGGCAGAATGCGGCAAAACATTGTTGCGCAGCGCACTGGATACTAGTAGGTTCGATTTATGTCCCCTCCCCACCCGTACATACTGCAACATGTTACTAGCATACGATTACTGCAACCCACCCTCCTCCCTCTTACCCTGTTCATGCACACCAACACACGCCAACACCCGCCAAAACACACATATACACACAAGCACACCGTATACTTATGTATGTACTTGTTTAAAACATTGCGCATAGAATCATAATGGTATGAATGACTAACCGCCTACAAATGGTGAGCTGGTGGTTGTAC] [+] EMBL BM581325 [CCGCACAAATCGCGCTTTGTGGCGTCAAAACTTTTACACATTTAGTACAGCACAAACAAACAAACAAACACCCGCCCTCCTGGTAGAAAATCATAGTGAATCGTACGCAAACATAGTACACGTTGTCTTCACCTTCGGCTCGCGTGGGTCGGAGATTAGTATGCCCTTTAGTAGTAGCTGTAAGAGGTGATTAACAGTGCAGCATCGTGCAGCATCCGCATGTTTCCCATCGTGCTAGCAACACACTAGAAGAATTTTACTTCAGCATGAGGATGCTCTTCCTCTTCTTCCACGGCTGCCAGCCCTTAGAAAGGTTCGGTAGCTCCGCAGTGCGCTAGGCAGCGATCTTTTGCAGGCAGAATGCGGCAAAACATTGTTGCGCAGCGCACTGGATACTAGTAGGTTCGATTTATGTCCCCTCCCCACCCGTACATACTGCAACATGTTACTAGCATACGATTACTGCAACCCACCCTCCTCCCTCTTACCCTGTTCATGCACACCAACACACGCCAACACCCGCCAAAACACACATATACACACAAGCACACCGTATACTTATGTATGTACTTGTTTAAAACATTGCGCATAGAATCATAATGGTATGAATGACTAACCGCCTACAAATGGTGAGCTGGTGGTTGTAC] consensusID : consensus_870#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 206 fasta sequence [ACCAAATACGGCCACCCGGCCGAATTTAAAAGTACACCACATAAAAGAAAAAACAAAACAGGCAAATCACACATCGCGCTGGGGGGCGTCAAAACTTTGACACAGTGAGTACAGCACAAACAAACAAACAAACACCCGCCCCCCTGGTAGAAAATCATAGTGAATCGTACGCAAACACAGAACACGGTGGCGTCACCTCCGGCTCG] [+] EMBL BX613772 [ACCAAATACGGCCACCCGGCCGAATTTAAAAGTACACCACATAAAAGAAAAAACAAAACAGGCAAATCACACATCGCGCTGGGGGGCGTCAAAACTTTGACACAGTGAGTACAGCACAAACAAACAAACAAACACCCGCCCCCCTGGTAGAAAATCATAGTGAATCGTACGCAAACACAGAACACGGTGGCGTCACCTCCGGCTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_870#0 ------------------------------------------------------------ consensus_870#1 ACCAAATACGGCCACCCGGCCGAATTTAAAAGTACACCACATAAAAGAAAAAACAAAACA 60 consensus_870#0 ----CCGCACAAATCGCGCTTTGTGGCGTCAAAACTTTTACACATTTAGTACAGCACAAA 56 consensus_870#1 GGCAAATCACACATCGCGCTGGGGGGCGTCAAAACTTTGACACAGTGAGTACAGCACAAA 120 **** ******** * ************** ***** * ************* consensus_870#0 CAAACAAACAAACACCCGCCCTCCTGGTAGAAAATCATAGTGAATCGTACGCAAACATAG 116 consensus_870#1 CAAACAAACAAACACCCGCCCCCCTGGTAGAAAATCATAGTGAATCGTACGCAAACACAG 180 ********************* *********************************** ** consensus_870#0 TACACGTTGTCTTCACCTTCGGCTCGCGTGGGTCGGAGATTAGTATGCCCTTTAGTAGTA 176 consensus_870#1 AACACGGTGGCGTCACCTCCGGCTCG---------------------------------- 206 ***** ** * ****** ******* consensus_870#0 GCTGTAAGAGGTGATTAACAGTGCAGCATCGTGCAGCATCCGCATGTTTCCCATCGTGCT 236 consensus_870#1 ------------------------------------------------------------ consensus_870#0 AGCAACACACTAGAAGAATTTTACTTCAGCATGAGGATGCTCTTCCTCTTCTTCCACGGC 296 consensus_870#1 ------------------------------------------------------------ consensus_870#0 TGCCAGCCCTTAGAAAGGTTCGGTAGCTCCGCAGTGCGCTAGGCAGCGATCTTTTGCAGG 356 consensus_870#1 ------------------------------------------------------------ consensus_870#0 CAGAATGCGGCAAAACATTGTTGCGCAGCGCACTGGATACTAGTAGGTTCGATTTATGTC 416 consensus_870#1 ------------------------------------------------------------ consensus_870#0 CCCTCCCCACCCGTACATACTGCAACATGTTACTAGCATACGATTACTGCAACCCACCCT 476 consensus_870#1 ------------------------------------------------------------ consensus_870#0 CCTCCCTCTTACCCTGTTCATGCACACCAACACACGCCAACACCCGCCAAAACACACATA 536 consensus_870#1 ------------------------------------------------------------ consensus_870#0 TACACACAAGCACACCGTATACTTATGTATGTACTTGTTTAAAACATTGCGCATAGAATC 596 consensus_870#1 ------------------------------------------------------------ consensus_870#0 ATAATGGTATGAATGACTAACCGCCTACAAATGGTGAGCTGGTGGTTGTAC 647 consensus_870#1 --------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||