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Anopheles gambiae
cluster # 8749 cluster # 8749       Sequences # 12       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8749#0 length = 1232 sequences # 7  
consensus_8749#1 length = 1166 sequences # 2  
consensus_8749#2 length = 674 sequences # 3  

consensusID : consensus_8749#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1232
fasta sequence
                              [TTCCATTTGATTTATTAGTGTCAATCTGCCGGCTGCAAACGCGTGCATCGTCCATTTTTACCACCTCGATCCGGCTGTTCAGTTCTGCGATTGCGAAAAGCATGGAGAAGCACGAAGTCGTCCCCGATGTGGTGCCGGTCGCCCCGGCCGAGCCGCAAGGAACCGACGTACCGCGAGTGGCACCACTGGCTGGTCGGCAACATTCCCGGGGCCGATGTAGCGCAGGGAATGGAACGCGGACAGTGGCGCCCTGTACACGCTCTGCATGACCGATCCGGATGCGCCGGACCAGATACGGGAGGAAATTACGGGCTGTTTGGACTTTTTGCGCCACGTGTACACCATTTTCGGGTTCACGTTCAATCTGGTGCTGTCGACGCGGCCGGAGAAGTACCTCGGGGAGATAGAGGTGTGGAACGAGGCGGAAAAGGCGCTGGCCGACTCGCTGGACAAGTTCGGCGAGCCGTGGAAGGAAAACCCGGGCGATGGGGCGTTCTACGGGCCGAAGATTGACATTACGATCATGG-ATGCGCTGAAGCGCAACCATCAGTGCGCTACGATTCAGCTCGACTTCCAGCTGCCGATTCGCTTCAACCTGAACTACATCGACGACAGTGGGGAGAAGAAGCGGCCGGTCATTATTCACCGGGCGGTGCTCGGCTCGGTGGAGCGTATGATTGCCATTCTGACGGAGAATTACGCCGGCAAGTGGCCGTTCTGGCTGTCCCCGCGGCAGGTGATGGTGGTCCCGGTCGGACCGGCGTACGACGATTATGCGGACCAGGTGCGACAGCGGCTGCACGAGGCAGGATTTATGGTGGAGGCCGATCTGGATGCGGGCGATACGATGAACAAGAAGATTCGCAATGCGCAGCT-GGCACAGTTTAACTTCATTCTGGTGGTTGGCGAAAAGGAACGCAGCTCAGAAACGGTCAACGTGCGCACACGCGACAACAAGGTGCATGGCGAGGTGACCGTCAACGATCTGGTCACTAAGCTGTCCAAGCTGCGCGACGAGTATGCACGCGGTGAGGATCAGTTTTAAGCGGAATTGGCAACCATTTTTCCCCGGAAGCATTTAGAGAGCGCTAACGTCGCGCAATTGCGCAAAACGCGTAAATTAGACAGGGTCTGATAATTCTTTGATTTTTTTTTCTACGTAAGTTATTGCTCATCATTCGTTCTGCTTGGCCCATTCTTATTCGCGCTACAGATACTGAAATGGAATAAAA]

[+] EMBL CNS097QL             [TTCCATTTGATTTATTAGTGTCAATCTGCCGGCTGCAAACGCGTGCATCGTCCATTTTTACCACCTCGATCCGGCTGTTCAGTTCTGCGATTGCGAAAAGCATGGAGAAGCACGAAGTCGTCCCCGATGTGGTGCCGGTCGCCCCGGCCGAGCCGCAAGGAACCGACGTACCGCGAGTGGCACCACTGGCTGGTCGGCAACATTCCCGGGGCCGATGTAGCGCAGGGAATGGAACGCGGACAGTGGCGCCCTGTACACGCTCTGCATGACCGATCCGGATGCGCCGGACCAGATACGGGAGGAAATTACGGGCTGTTTGGACTTTTTGCGCCACGTGTACACCATTTTCGGGTTCACGTTCAATCTGGTGCTGTCGACGCGGCCGGAGAAGTACCTCGGGGAGATAGAGGTGTGGAACGAGGCGGAAAAGGCGCTGGCCGACTCGCTGGACAAGTTCGGCGAGCCGTGGAAGGAAAACCCGGGCGATGGGGCGTTCTACGGGCCGAAGATTGACATTACGATCATGG ATGCGCTGAAGCGCAACCATCAGTGCGCTACGATTCAGCTCGACTTCCAGCTGCCGATTCGCTTCAACCTGAACTACATCGACGACAGTGGGGAGAAGAAGCGGCCGGTCATTATTCACCGGGCGGTGCTCGGCTCGGTGGAGCGTATGATTGCCATTCTGACGGAGAATTACGCCGGCAAGTGGCCGTTCTGGCTGTCCCCGCGGCAGGTGATGGTGGTCCCGGTCGGACCGGCGTACGACGATTATGCGGACCAGGTGCGACACCGGCTGCACGAGGCAGGATTTATGGTGGAGGCCGATCTGGATGCGGGCGATACGATGAACAAGAAGATTCGCAATGCGCA CTGGGCACAGTTTAACTTCATTCTGGTGGTTGGCGAA                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CNS097QM             [                                                                                                                                                                                                                                                          CTGTACACGCTCTGCATGACCGATCCGGATGCGCCGGACCAGATACGGGAGAAAAAAACGGGCTGTTTGGACTTTTTGCGCCACGTGTACACCATTTTCGGGTTCACGTTCAATCTGGTGCTGTCGACGCGGCCGGAGAAGTACCTCGGGGAGATAGAGGTGTGGAACGAGGCGGAAAAGGCGCTGGCCGACTCGCTGGACAAGTTCGGCGAGCCGTGGAAGGAAAACCCGGGCGATGGGGCGTTCTACGGGCCGAAGATTGACATTACGATCATGGAATG GCTGAAGCGCAACCATCAGTGCGCTACGATTCAGCTCGACTTCCAGCTGCCGATTCGCTTCAACCTGAACTACATCGACGACAGTGGGGAGAAGAAGCGGCCGGTCATTATTCACCGGGCGGTGCTCGGCTCGGTGGAGCGTATGATTGCCATTCTGACGGAGAATTACGCCGGCAAGTGGCCGTTCTGGCTGTCCCCGCGGCAGGTGATGGTGGTCCCGGTCGGACCGGCGTACGACGATTATGCGGACCAGGTGCGACAGCGGCTGCACGAGGCAGGATTTATGGTGGAGGCCGATCTGGATGCGGGCGATACGATGAACAAGAAGATTCGCAATGCGCAGCT GGCACAGTTTAACTTCATTCTGGTGGTTGGCGAAAAGGAACGCAGCTCAGAAACGGTCAACGTGCGCACACGCGACAACAAGGTGCATGGCGAGGTGACCGTCAACGATCTGGTCACTAAGCTGTCCAAG TGCGCGACGAGTATGCACGCGGTGAGGATCAGTTTTAAGCGGAATTGGCAACCATTTTTCCCCGGAAGCATTTAGAGAGCGCTAACGTCGCGCAATTGCGCAAAACGCGTAAATTAGACAGGGTCTGATAATTCTTTGATTTTTTTTTCTACGTAAGTTATTGCTCATCATTCGTTCTGCTTGGCCCATTCTTATTCGCGCTACAGATACTGAAATGG       ]
[+] EMBL BX615896             [                                                                                                                                                                                                                                                                                                                                                                                                           TCGGGGAGATAGAGGTGTGGAACGAGGCGGAAAAGGCGCTGGCCGACTCGCTGGACAAGTTCGGCGAGCCGTGGAAGGAAAACCCGGGCGATGGGGCGTTCTACGGGCCGAAGATTGACATTACGATCATGG ATGCGCTGAAGCGCAACCATCAGTGCGCTACGATTCAGCTCGACTTCCAGCTGCCGATTCGCTTCAACCTGAACTACATCGACGACAGTGGGGAGAAGAAGCGGCCGGTCATTATTCACCGGGCGGTGCTCGGCTCGGTGGAGCGTATGATTGCCATTCTGACGGAGAATTACGTCGGCAAGTGGCCGTTCTGGCTGTCCCCGCGGCAGGTGATGGTGGTCCCGGTCGGACCGGCGTACGACGATTATGCGGACCAGGTGCGACAGCGGCTGCACGAGGCAGGATTTATGGTGGAGGCCGATCTGGATGCGGGCGATACGATGAACAAGAAGATTCGCAATGCGCAGCT GGCACAGTTTAACTTCATTCTGGTGGTTGGCGAAAAGGAACGCAGCTCAGAAACGGTCAACGTGCGCACACGCGACAACAAGGTGCATGGCGAGGTGACCGTCAACGATCTGGTCACTAAGCTGTCCAAGCTGCGCGACGAGTATGCACGCGGTGAGGATCAGTTTTAAGCGGAATTGGCAACCATTTTTCCCCGGAAGCATTTAGAGAGCGCTAACGTCGCGCAATTGCGCAAAACGCGTAAATTAGAC                                                                                                          ]
[+] EMBL BX613625             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CGTGGAAGGAAAACCCGGGCGATGGGGCGTTCTACGGGCCGAAGATTGACATTACGATCATGG ATGCGCTGAAGCGCAACCATCAGTGCGCTACGATTCAGCTCGACTTCCAGCTGCCGATTCGCTTCAACCTGAACTACATCGACGACAGTGGGGAGAAGAAGCGGCCGGTCATTATTCACCGGGCGGTGCTCGGCTCGGTGGAGCGTATGATTGCCATTCTGACGGAGAATTACGCCGGCAAGTGGCCGTTCTGGCTGTCCCCGCGGCAGGTGATGGTGGTCCCGGTCGGACCGGCGTACGACGATTATGCGGACCAGGTGCGACAGCGGCTGCACGAGGCAGGATTTATGGTGGAGGCCGATCTGGATGCGGGCGATACGATGAACAAGAAGATTCGCAATGCGCAGCT GGCACAGTTTAACTTCATTCTGGTGGTTGGCGAAAAGGAACGCAGCTCAGAAACGGTCAACGTGCGCACACGCGACAACAAGGTGCATGGCGAGGTGACCGTCATCGATCTGGTCACTAAGCTGTCCAAGCTGCGCGACGAGTATGCACGCGGTGAGGATCAGTTTTAAGCGGAATTGGCAACCATTTTTCCCCGGAAGCATTTAGAGAGCGCTAACGTCGCGCAATTGCGCAAAACGCGTAAATTAGACAGGGTCTGATAATTCTTTGATTTTTTTTT                                                                             ]
[+] EMBL BM654525             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ccgGCGCAACCATCAGTGCGCCACGATTCAGCTCGACTTCCAGCTGCCGATTCGCTTCAACCTGAACTACATCGACGACAGTGGGGAGAAGAAGCGACCGGTCATTATTCACCGGGCGGTGCTCGGCTCGGTGGAGCGTATGATTGCCATTTTGACGGAGAATTACGCCGGCAAGTGGCCGTTCTGGCTGTCCCCGCGGCAGGTGATGGTGGTCCCGGTCGGACCGGCGTACGACGATTATGCGGACCAGGTGCGGCAGCGGCTGCACGAGGCAGGATTTATGGTGGAGGCCGATCTGGATGCGGGCGATACGATGAACAAGAAGATTCGCAATGCGCAGCT GGCACAGTTTAACTTTATTCTGGTGGTTGGCGAAAAGGAACGCAGCTCAGAAACGGTCAACGTGCGCACACGCGACAACAAGGTGCATGGCGAGGTGACCGTCAACGATCTGGTCACTAAGCTGTCCAAGCTGCGCGACGAGTATGCACGCGGTGAGGATCAGTTTTAAGCGGAATTGGCAACCAT                                                                                                                                                                          ]
[+] EMBL BM615412             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ccgATCGACGACAGTGGGGAGAAGAAGCGGCCGGTCATTATTCACCGGGCGGTGCTCGGCTCGGTGGAGCGTATGATTGCCATTCTGACGGAGAATTACGCCGGCAAGTGGCCGTTCTGGCTGTCCCCGCGGCAGGTGATGGTGGTCCCGGTCGGACCGGCGTACGACGATTATGCGGACCAGGTGCGACAGCGGCTGCACGAGGCAGGATTTATGGTGGAGGCCGATCTGGATGCGGGCGATACGATGAACAAGAAGATTCGCAATGCGCAGCT GGCACAGTTTAACTTCATTCTGGTGGTTGGCGAAAAGGAACGCAGCTCAGAAACGGTCAACGTGCGCACACGCGACAACAAGGTGCATGGCGAGGTGACCGTCAACGATCTGGTCACTAAGCTGTCCAAGCTGCGCGACGAGTATGCACGCGGTGAGGATCAGTTTTAAGCGGAATTGGCAACCATTTTTCCCCGGAAGCATTTAGAGAGCGCTAACGTCGCGCAATTGCGCAAAACGCGTAAATTAGACAGGGTCTGATAATTCTTTGATTTTTTTTTCTACGTAAGTTATTGCTCATCATTCGTTCTGCTTGGCCCATTCTTATTCGCGCTACAGATACTGAAATGGAATAAAA]
[-] EMBL AGA284728            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GTCCCCGCGGCAGGTGATGGTGGTCCCGGTCGGACCGGCGTACGACGATTATGCGGACCAGGTGCGACAGCGGCTGCACGAGGCAGGATTTATGGTGGAGGCCGATCTGGATGCGGGCGATACGATGAACAAGAAGATTCGCAATGCGCAGCT GGCACAGTTTAACTTCATTCTGGTGCTTGGCGAAAAGGAACGCAGCTCAGAAACGGTCAACGTGCGCACACGCGACAACAAGGTGCATGGCGAGGTGACCGTCAACGATCTGGTCACTAAGCTGTCCAAGCTGCGCGACGAGTATGCACGCGGT                                                                                                                                                                                                          ]


>consensus_8749#0 TTCCATTTGATTTATTAGTGTCAATCTGCCGGCTGCAAACGCGTGCATCGTCCATTTTTA CCACCTCGATCCGGCTGTTCAGTTCTGCGATTGCGAAAAGCATGGAGAAGCACGAAGTCG TCCCCGATGTGGTGCCGGTCGCCCCGGCCGAGCCGCAAGGAACCGACGTACCGCGAGTGG CACCACTGGCTGGTCGGCAACATTCCCGGGGCCGATGTAGCGCAGGGAATGGAACGCGGA CAGTGGCGCCCTGTACACGCTCTGCATGACCGATCCGGATGCGCCGGACCAGATACGGGA GGAAATTACGGGCTGTTTGGACTTTTTGCGCCACGTGTACACCATTTTCGGGTTCACGTT CAATCTGGTGCTGTCGACGCGGCCGGAGAAGTACCTCGGGGAGATAGAGGTGTGGAACGA GGCGGAAAAGGCGCTGGCCGACTCGCTGGACAAGTTCGGCGAGCCGTGGAAGGAAAACCC GGGCGATGGGGCGTTCTACGGGCCGAAGATTGACATTACGATCATGGATGCGCTGAAGCG CAACCATCAGTGCGCTACGATTCAGCTCGACTTCCAGCTGCCGATTCGCTTCAACCTGAA CTACATCGACGACAGTGGGGAGAAGAAGCGGCCGGTCATTATTCACCGGGCGGTGCTCGG CTCGGTGGAGCGTATGATTGCCATTCTGACGGAGAATTACGCCGGCAAGTGGCCGTTCTG GCTGTCCCCGCGGCAGGTGATGGTGGTCCCGGTCGGACCGGCGTACGACGATTATGCGGA CCAGGTGCGACAGCGGCTGCACGAGGCAGGATTTATGGTGGAGGCCGATCTGGATGCGGG CGATACGATGAACAAGAAGATTCGCAATGCGCAGCTGGCACAGTTTAACTTCATTCTGGT GGTTGGCGAAAAGGAACGCAGCTCAGAAACGGTCAACGTGCGCACACGCGACAACAAGGT GCATGGCGAGGTGACCGTCAACGATCTGGTCACTAAGCTGTCCAAGCTGCGCGACGAGTA TGCACGCGGTGAGGATCAGTTTTAAGCGGAATTGGCAACCATTTTTCCCCGGAAGCATTT AGAGAGCGCTAACGTCGCGCAATTGCGCAAAACGCGTAAATTAGACAGGGTCTGATAATT CTTTGATTTTTTTTTCTACGTAAGTTATTGCTCATCATTCGTTCTGCTTGGCCCATTCTT ATTCGCGCTACAGATACTGAAATGGAATAAAA



consensusID : consensus_8749#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1166
fasta sequence
                              [CTTTACGCCGCCAGCAACCCGCTAGGCGAGCACAAAACAGTGACCGGGGCATCTCGCCAAAGCGATGGGTTTCTAGGTGCAAAAGCACCCCGTCCATCGAGCTGCTCGAGTTCTGTTGCCTGTACGCAACGTAAAATGCTCCCAGTGTTGTGCCGCCCAGTGTAATGCATAAATTCCTCGCAAACGGGCGGCTATGGTGCGACCTCGTGCGTCAAGCCGGACCGAAAGCCACCAGCGGTCACCGCCGTCCACCGTTCGCCTTCTGCACTCGGCTGGACACCAGCATCTACACCCCAATGAAACGCTACAGTATTCTGAATACGTGGGTCGGCTCGGTCGTCGGCGCCATTCCGCCGCTGATGGGCTGGGCTGCCTGCACCGGCGGCGACCTGGGCGCCGGCGCATGGATCCTGGCCGGGCTGCTGTACTGCTGGCAGTTTCCTCACTTTAACGCGCTGTCGTGGAACATCCGGCCGGAGTACCTTAAGGCCGGCTACAAAATGATGGCCAACTCACACCCGGCCCTCTGTACGCGCGTTTCCCTGCGGCATACCGGGTTCATTGCCGGTCTGTCGCTGCTCGCCCCCGCGCTGGATGTGACGAACGTTTGGTTCGCGCTGGAATCCCTTCCGCTGAATGCTTACTTTGCCTACCTGGCGTACGATTTCCATCAGAAGGCGGACAGTAAAAGCTCGCGCAA-CTGTTCCGCTTCTCGCTGCTCCATCTGCCCCTGCTGATGGCACTGTTTCTGCTGAACAAAAAGCACTGGCAGTTTAGGGAGGACAAGAAGAGCGGCGAAACAACGGTCGAGCTGCAGGGTGGTGGTGCCATCGCTGCTACGGGTGTGTTTGTGAGTGGTGGTGAGCGGCCGGGGGAGCAGGGCAGCGGCGAATACCTTGTACCAAATATTGTGGCCGACATTGGGGCA-CGACACCGTCGCCCGGTAGTATCAAGGCGATCGAGGAGAGTTTGCTATCGAACGTGGCCACCGTGCTACCGACGGCGGGCAAACAGAAGCTTTGAGAGGGCTTTTGTTGCTGTAGGGGTAGGTGTGTCCGCGTATTTCCGGTGCTGCAAGGATTTATTTGTATAAAGGAGAGATAGATTTACGAAGTGATATAGAAGTCAATGATAAATAAAATGCCCCGCGAATTAAAAAAAAAAAA]

[+] EMBL CNS08HQ9             [CTTTACGCCGCCAGCAACCCGCTAGGCGAGCACAAAACAGTGACCGGGGCATCTCGCCAAAGCGATGGGTTTCTAGGTGCAAAAGCACCCCGTCCATCGAGCTGCTCGAGTTCTGTTGCCTGTACGCAACGTAAAATGCTCCCAGTGTTGTGCCGCCCAGTGTAATGCATAAATTCCTCGCAAACGGGCGGCTATGGTGCGACCTCGTGCGTCAAGCCGGACCGAAAGCCACCAGCGGTCACCGCCGTCCACCGTTCGCCTTCTGCACTCGGCTGGACACCAGCATCTACACCCCAATGAAACGCTACAGTATTCTGAATACGTGGGTCGGCTCGGTCGTCGGCGCCATTCCGCCGCTGATGGGCTGGGCTGCCTGCACCGGCGGCGACCTGGGCGCCGGCGCATGGATCCTGGCCGGGCTGCTGTACTGCTGGCAGTTTCCTCACTTTAACGCGCTGTCGTGGAACATCCGGCCGGAGTACCTTAAGGCCGGCTACAAAATGATGGCCAACTCACACCCGGCCCTCTGTACGCGCGTTTCCCTGCGGCATACCGGGTTCATTGCCGGTCTGTCGCTGCTCGCCCCCGCGCTGGATGTGACGAACGTTTGGTTCGCGCTGGAATCCCTTCCGCTGAATGCTTACTTTGCCTACCTGGCGTACGATTTCCATCAGAAGGCGGACAGTAAAAGCTCGCGCAA CTGTTCCGCTTCTCGCTGCTCCATCTGCCCCTGCTGATGGCACTGTTTCTGCTGAACAAAAAGCACTGGCAGTTTAGGGAGGACAAGAAGAGCGGCGAAACAACGGTCGAGCTGCAGGGTGGTGGTGCCATCGCTGCTACGGGTGTGTTTGTGAGTGGTGGTGAGCGGCCGGGGGAGCAGGGCAGCGGCGAATACCTTGTACCAAATATTGTGGCCGACATTGGGGCA CGACACCGTCGCCCGGTAGTATCAAGGCGATCGAGGAGAGTTTGCTATCGAACGTGGCCACCGTGCTACCGACGGCGGGCAA                                                                                                                                                            ]
[-] EMBL CNS08HQA             [                                                                                                                                                                                                                   TCAAGCCGGACCGAAAGCCACCAGCGGTCACCGCCGTCCACCGTTCGCCTTCTGAACTCGGCTGGACACCAGCATCTACACCCCAATGAAACGCTACAGTATTCTGAATACGTGGGTCGGCTCGGTCGTCGGCGCCATTCCGCCGCTGATGGGCTGGGCTGCCTGCACCGGCGGCGACCTGGGCGCCGGCGCATGGATCCTGGCCGGGCTGCTGTACTGCTGGCAGTTTCCTCACTTTAACGCGCTGTCGTGGAACATCCGGCCGGAGTACCTTAAGGCCGGCTACAAAATGATGGCCAAATCACACCCGGCCCTCTGAACGCGCGTTTCCCTGCGGCATACCGGGTTCATTGCCGGTCTGTCGCTGCTCGCCCCCGCGCTGGATGTGACGAACGTTTGGTTCGCGCTGGAATCCCTTCCGCTGAATGCTTACTTTGCCTCCCTGGCGTACGATTTCCATCAGAAGGCGGACAGTAAAAGCTCGCGCAAGCTGTTCCGCTTCTCGCTGCTCCATCTGCCCCTGCTAATGGCACTGTTTCTGCTGAACAAAAAGCACTGGCAGTTTAGGGAGGACAAGAAGAGCGGCGAAACAACGGTCGAGCTGCAGGGTGGTGGTGCCATCGCTGCTACGGGTGTGTTTGTGAGTGGTGGTGAGCGGCCGGGGGAGCAGGGCAGCGGCGAATACCTTGTACCAAATATTGTGGCCGACATTGGGGCACCGACACCGTCGCCCGGTAGTATCAAGGCGATCGAGGAGAGTTTGCTATCGAACGTGGCCACCGTGCTACCGACGGCGGGCAAACAGAAGCTTTGAGAGGGCTTTTGTTGCTGTAGGGGTAGGTGTGTCCGCGTATTTCCGGTGCTGCAAGGATTTATTTGTATAAAGGAGAGATAGATTTACGAAGTGATATAGAAGTCAATGATAAATAAAATGCCCCGCGAATTAAAAAAAAAAAA]


>consensus_8749#1 CTTTACGCCGCCAGCAACCCGCTAGGCGAGCACAAAACAGTGACCGGGGCATCTCGCCAA AGCGATGGGTTTCTAGGTGCAAAAGCACCCCGTCCATCGAGCTGCTCGAGTTCTGTTGCC TGTACGCAACGTAAAATGCTCCCAGTGTTGTGCCGCCCAGTGTAATGCATAAATTCCTCG CAAACGGGCGGCTATGGTGCGACCTCGTGCGTCAAGCCGGACCGAAAGCCACCAGCGGTC ACCGCCGTCCACCGTTCGCCTTCTGCACTCGGCTGGACACCAGCATCTACACCCCAATGA AACGCTACAGTATTCTGAATACGTGGGTCGGCTCGGTCGTCGGCGCCATTCCGCCGCTGA TGGGCTGGGCTGCCTGCACCGGCGGCGACCTGGGCGCCGGCGCATGGATCCTGGCCGGGC TGCTGTACTGCTGGCAGTTTCCTCACTTTAACGCGCTGTCGTGGAACATCCGGCCGGAGT ACCTTAAGGCCGGCTACAAAATGATGGCCAACTCACACCCGGCCCTCTGTACGCGCGTTT CCCTGCGGCATACCGGGTTCATTGCCGGTCTGTCGCTGCTCGCCCCCGCGCTGGATGTGA CGAACGTTTGGTTCGCGCTGGAATCCCTTCCGCTGAATGCTTACTTTGCCTACCTGGCGT ACGATTTCCATCAGAAGGCGGACAGTAAAAGCTCGCGCAACTGTTCCGCTTCTCGCTGCT CCATCTGCCCCTGCTGATGGCACTGTTTCTGCTGAACAAAAAGCACTGGCAGTTTAGGGA GGACAAGAAGAGCGGCGAAACAACGGTCGAGCTGCAGGGTGGTGGTGCCATCGCTGCTAC GGGTGTGTTTGTGAGTGGTGGTGAGCGGCCGGGGGAGCAGGGCAGCGGCGAATACCTTGT ACCAAATATTGTGGCCGACATTGGGGCACGACACCGTCGCCCGGTAGTATCAAGGCGATC GAGGAGAGTTTGCTATCGAACGTGGCCACCGTGCTACCGACGGCGGGCAAACAGAAGCTT TGAGAGGGCTTTTGTTGCTGTAGGGGTAGGTGTGTCCGCGTATTTCCGGTGCTGCAAGGA TTTATTTGTATAAAGGAGAGATAGATTTACGAAGTGATATAGAAGTCAATGATAAATAAA ATGCCCCGCGAATTAAAAAAAAAAAA



consensusID : consensus_8749#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 674
fasta sequence
                              [CGACCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGTGAAAGCGCTCAGCTAGCACCTGCAAAAAGGAAAGCTCCAGTTCCTGTTTCATTTTCTGTGGCCCGCGGTTAGCTAAAACAAACCATCCAAAATGGACGCGATCAAGAAGAAAATGCAGGCGATGAAGATCGAGAAGGATAACGCGCAGGACAAAGCCGACACCTGCGAGAACCAGGCGAAGGAGGCGAACCTGCGCGCCGACAAGATCATGGAGGAGGTCGCCGACCTGACCAAGCGTCTGGAGCAGGTCACCCAGGACCATGAGAAGTTCAAGGCTAGCTTGGAGCAGGCCACCAAGGACAGCGAGGAGAAGGACAAGCTGCTCACCTCGACCGAGGCGAACGTGGCCGCCCTGACCCGCAAGGTCCAGCAGGTTGAGGAGGATCTGGAAAAGTCTGAGGAACGTTCGTCCGCCGCGCTGTCCAAGCTGCTGGAGGCTACCCAGTCGGCTGATGAGAACAACCGTATGTGCAAAGTGTTGGAGAACCGTTCCCAGCAGGATGAGGAGCGTATGGATCAGCTGTCCAACCAGCTGAAGGAGGCGCGTATGCTCGCTGAAGACGCCGATACCAAGTCCGACGAGGTGTCCCGCAAGCTGGCCTTCGTTGAAGACGAGCTGGAAGTGGCTGAGGA]

[+] EMBL BM619821             [CGACCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGTGAAAGCGCTCAGCTAGCACCTGCAAAAAGGAAAGCTCCAGTTCCTGTTTCATTTTCTGTGGCCCGCGGTTAGCTAAAACAAACCATCCAAAATGGACGCGATCAAGAAGAAAATGCAGGCGATGAAGATCGAGAAGGATAACGCGCAGGACAAAGCCGACACCTGCGAGAACCAGGCGAAGGAGGCGAACCTGCGCGCCGACAAGATCATGGAGGAGGTCGCCGACCTGACCAAGCGTCTGGAGCAGGTCACCCAGGACCATGAGAAGTTCAAGGCTAGCTTGGAGCAGGCCACCAAGGACAGCGAGGAGAAGGACAAGCTGCTCACCTCGACCGAGGCGAACGTGGCCGCCCTGACCCGCAAGGTCCAGCAGGTTGAGGAGGATCTGGAAAAGTCTGAGGAACGTTCGTCCGCCGCGCTGTCCAAGCTGCTGGAGGCTACCCAGTCGGCTGATGAGAACAACCGTATGTGCAAAGTGTTGGAGAACCGTTCCCAGCAGGATGAGGAGCGTATGGATCAGCTGTCCAACCAGCTGAAGGAGGCGCGTATGCTCGCTGAAGACGCCGATACCAAGTCCGACGAGGTGTCCCGCAA                                       ]
[+] EMBL BM624041             [            CCGCGGACGCGTGGGCGGACGCGTGGGGTGAAAGCGCTCAGCTAGCACCTGCAAAAAGGAAAGCTCCAGTTCCTGTTTCATTTTCTGTGGCCCGCGGTTAGCTAAAACAAACCATCCAAAATGGACGCGATCAAGAAGAAAATGCAGGCGATGAAGATCGAGAAGGATAACGCGCAGGACAAAGCCGACACCTGCGAGAACCAGGCGAAGGAGGCGAACCTGCGCGCCGACAAGATCATGGAGGAGGTCGCCGACCTGACCAAGCGTCTGGAGCAGGTCACCCAGGACCATGAGAAGTTCAAGGCTAGCTTGGAGCAGGCCACCAAGGACAGCGAGGAGAAGGACAAGCTGCTCACCTCGACCGAGGCGAACGTGGCCGCCCTGACCCGCAAGGTCCAGCAGGTTGAGGAGGATCTGGAAAAGTCTGAGGAACGTTCGTCCGCCGCGCTGTCCAAGCTGCTGGAGGCTACCCAGTCGGCTGATGAGAACAACCGTATGTGCAAAGTGTTGGAGAACCGTTCCCAGCAGGATGAGGAGCGTATGGATCAGCTGTCCAACCAGCTGAAGGAGGCGCGTATGCTCGCTGAAGACGCCGATACCAAGTCCGACGAGGTGTCCCGCAAGCTGGCCTTCGTTGAAGACGAGCTGGAAGTGGCTGAGGA]
[+] EMBL BM620611             [                        CCGCCCACGCGTCCGGTGAAAGCGCTCAGCTAGCACCTGCAAAAAGGAAAGCTCCAGTTCCTGTTTCATTTTCTGTGGCCCGCGGTTAGCTAAAACAAACCATCCAAAATGGACGCGATCAAGAAGAAAATGCAGGCGATGAAGATCGAGAAGGATAACGCGCAGGACAAAGCCGACACCTGCGAGAACCAGGCGAAGGAGGCGAACCTGCGCGCCGACAAGATCATGGAGGAGGTCGCCGACCTGACCAAGCGTCTGGAGCAGGTCACCCAGGACCATGAGAAGTTCAAGGCTAGCTTGGAGCAGGCCACCAAGGACAGCGAGGAGAAGGACAAGCTGCTCACCTCGACCGAGGCGAACGTGGCCGCCCTGACCCGCAAGGTCCAGCAGGTTGAGGAGGATCTGGAAAAGTCTGAGGAACGTTCGTCCGCCGCGCTGTCCAAGCTGCTGGAGGCTACCCAGTCGGCTGATGAGAACAACCGTATGTGCAAAGTGTTGGAGAACCGTTCCCAGCAGGATGAGGAGCGTATGGATCAGCTGTCCAACCAGCTGAAGGAGGCGCGTATGCTCGCTGAAGACGCCGATACCAAGTCCGACGAGGTGTCCCGCAAGCTGGCCTTCGTTGAAGACGAGCTGGAAGTGGCTGAGG ]


>consensus_8749#2 CGACCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGTGAAAGCGCTCAGCTAGCAC CTGCAAAAAGGAAAGCTCCAGTTCCTGTTTCATTTTCTGTGGCCCGCGGTTAGCTAAAAC AAACCATCCAAAATGGACGCGATCAAGAAGAAAATGCAGGCGATGAAGATCGAGAAGGAT AACGCGCAGGACAAAGCCGACACCTGCGAGAACCAGGCGAAGGAGGCGAACCTGCGCGCC GACAAGATCATGGAGGAGGTCGCCGACCTGACCAAGCGTCTGGAGCAGGTCACCCAGGAC CATGAGAAGTTCAAGGCTAGCTTGGAGCAGGCCACCAAGGACAGCGAGGAGAAGGACAAG CTGCTCACCTCGACCGAGGCGAACGTGGCCGCCCTGACCCGCAAGGTCCAGCAGGTTGAG GAGGATCTGGAAAAGTCTGAGGAACGTTCGTCCGCCGCGCTGTCCAAGCTGCTGGAGGCT ACCCAGTCGGCTGATGAGAACAACCGTATGTGCAAAGTGTTGGAGAACCGTTCCCAGCAG GATGAGGAGCGTATGGATCAGCTGTCCAACCAGCTGAAGGAGGCGCGTATGCTCGCTGAA GACGCCGATACCAAGTCCGACGAGGTGTCCCGCAAGCTGGCCTTCGTTGAAGACGAGCTG GAAGTGGCTGAGGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8749#1      ----CTTTACGCCGCCAGCAACCCGCTAGGCGAGCACAAAACAGTGACCGGGGCATCTCG 56
consensus_8749#2      ------------------------------------------------------------
consensus_8749#0      TTCCATTTGATTTATTAGTGTCAATCTGCCGGCTGCAAACGCGTGCATCGTCCATTTTTA 60
                                                                                  

consensus_8749#1      CCAAAGCGAT--GGGTTTCTAGGTGCAAAAGCACCCCGTCCATCGAGCTGCTCGAGTTCT 114
consensus_8749#2      ------------------------------------------------------------
consensus_8749#0      CCACCTCGATCCGGCTGTTCAGTTCTGCGATTGCGAAAAGCATGGAGAAGCACGAAGTCG 120
                                                                                  

consensus_8749#1      GTTGCCTGTACGCAACGTAAAATGCTCCCAGTGTTGTGCCGCCCAGTGTAATGCATAAAT 174
consensus_8749#2      ------------------------------------------------------------
consensus_8749#0      TCCCCGATGTGGTGCCGGTCGCCCCGGCCGAGCCGCAAGGAACCGACGTACCGCGAGTGG 180
                                                                                  

consensus_8749#1      TCCTCGCAAACGGGCGGCTATGGTGCGACCTCGTGCGTCAAGCCGGACCGAAAGCCACCA 234
consensus_8749#2      ------------------------------------------------------------
consensus_8749#0      CACCACTGGCTGGTCGGCAACATTCCCGGGGCCGATGTAGCGCAGGGAATGGAACGCGGA 240
                                                                                  

consensus_8749#1      GCGGTCACCGCCGTCCACCGTTCGCCTTCTGCACTCGGCTGGACACCAGCATCTACACCC 294
consensus_8749#2      ------------------------------------------------------------
consensus_8749#0      CAGTGGCGCCCTGTACACGCTCTGCATGACCGATCCGGATGCGCCGGACCAGATACGGGA 300
                                                                                  

consensus_8749#1      CAATGAAACGC----TACAGTATTCTGAATACGTGGGT---CGGCTCGGTCGTCGGCG-C 346
consensus_8749#2      --------------------------CGACCCACGCGT---CCGCCCACGCGTCCGC--C 29
consensus_8749#0      GGAAATTACGGGCTGTTTGGACTTTTTGCGCCACGTGTACACCATTTTCGGGTTCACGTT 360
                                                     *  * **   *         **   *   

consensus_8749#1      CATTCCGCCGCTGATGGGCTGGGCTGCCT-GCACCGGCGGCGACCTGGGCGCCGGCGCAT 405
consensus_8749#2      CACGCGTCCGGTGAAAG--CGCTCAGCTA-GCACCTGCAAAAAGGAAAGCTCCAGTTCCT 86
consensus_8749#0      CAATCTGGTGCTGTCGACGCGGCCGGAGAAGTACCTCGGGGAGATAGAGGTGTGGAACGA 420
                      **  *    * **       *  * *    * ***             *     *  *  

consensus_8749#1      GGATCC-----TGGCC---GGGCTGC-TGT--ACTGCTGGCAGTTTCCTCACTTTAACGC 454
consensus_8749#2      GTTTCA-----TTTTCTGTGGCCCGC-GGTTAGCTAAAACAAACCATCCAAAATGGACGC 140
consensus_8749#0      GGCGGAAAAGGCGCTGGCCGACTCGCTGGACAAGTTCGGCGAGCCGTGGAAGGAAAACCC 480
                      *                  *    **  *     *      *        *     ** *

consensus_8749#1      GCTGTCGTGGAACATCCGGCCGGAGTACCTTAAGGCCGGCTACAAAATGATGGCCAACTC 514
consensus_8749#2      GATCAAGAAGAAAATGCAGGCGATGAAGATCGAGA--------AGGATAACGCGCAGGAC 192
consensus_8749#0      GGGCGATGGGGCGTTCTACGGGCCGAAGATTGACATTACGATCATGGATGCGCTGAAGCG 540
                      *        *    *      *  * *  *  *          *       *   *    

consensus_8749#1      ACACC--CGGCCCTCTGTAC----GCGCGTTTCCCTGCGGCATACCGGGTTCATTGCCGG 568
consensus_8749#2      AAAGC--CGACAC-CTGCGA----GAACCAGGCGAAGGAGGCGAACCTGCGCGCCGACAA 245
consensus_8749#0      CAACCATCAGTGCGCTACGATTCAGCTCGACTTCCAGCTGCCGATTCGCTTCAACCTGAA 600
                        * *  *    * **        *  *        *  *   *       *        

consensus_8749#1      TCTGTCGCTGCTCGCCCCCGCGCTGGATGTGACGAACGTTTGGTTCGCGCTGGAATCCCT 628
consensus_8749#2      GATCATGGAGGAGGTCGCCGACCTGAC-----CAAGCGTCTGGAGCAGGTC---ACCCAG 297
consensus_8749#0      CTACATCGACGACAGTGGGGAGAAGAAGCGGCCGGTCATTATTCACCGGGCGGTGCTCGG 660
                                         *    *       *   * *      *  *        *  

consensus_8749#1      TCCGCTGAATGCTTACTTTGCCTACCTGGCGTACGATTT--CCATCAGAAGGC------G 680
consensus_8749#2      GACCATGAGAAGTT-CAAGGCTAGCTTGGAGCAGG------CCACCAA-----------G 339
consensus_8749#0      CTCGGTGGAGCGTATGATTGCCATTCTGACGGAGAATTACGCCGGCAAGTGGCCGTTCTG 720
                        *  **     *      **     **  * *        **  **            *

consensus_8749#1      GACAGTAAAAGCTCGCGCAACTGTTCCGCTTCTCGCTGCTCCAT-CTGC--CCCTGCTGA 737
consensus_8749#2      GACAGCGAGGAGAAGGACAA-------GCTGCTCACC------T-CGAC--CGAGGCGAA 383
consensus_8749#0      GCTGTCCCCGCGGCAGGTGATGGTGGTCCCGGTCGGACCGGCGTACGACGATTATGCGGA 780
                      *                  *        *   **         * *  *      **  *

consensus_8749#1      T--GGCACTGTTTCTGCTGAACAAAAAGCACTGGCAGTTTAGGGAGGACAAGAAGAGCGG 795
consensus_8749#2      C--GTGGCCGCC----CTGACCCGCAAGGTCCAGCAGGTTGAGGAGGATCTGGAAAA-GT 436
consensus_8749#0      CCAGGTGCGACAGCGGCTGCACGAGGCAGGATTTATGGTGGAGGCCGATCTGGATGCGGG 840
                         *   *        ***  *              * *   **  **   * *    * 

consensus_8749#1      CGAAACAACGGTCGAGCTGCAGGGT--GGTGGTGCCATCGCTGCTACGGGTGTGTTTGTG 853
consensus_8749#2      CTGAGGAACGTTCGTCC------GC--CGCGCTGTCCAAGCTGCTGGAGGCTACCCAGTC 488
consensus_8749#0      CGATACGATGAACAAGAAGATTCGCAATGCGCAGCTGGCACAGTTTAACTTCATTCTGGT 900
                      *      * *  *          *    * *  *      * * *            *  

consensus_8749#1      AGTGGTGGTGAGCGGCCGGGGGAGCAGGGCAGCG-----GCGAATACCTTGTACCAAATA 908
consensus_8749#2      GGCTGATGAGAACAACCGTATGTGCAAAGTGTTG-----GAGAA----CCGTTCCCAGCA 539
consensus_8749#0      GGTTGGCGAAAAGGAACGCAGCTCAGAAACGGTCAACGTGCGCACACGCGACAACAAGGT 960
                       *  *  *  *     **                     * * *          * *   

consensus_8749#1      TTGTGGCCGACATTGGGGCACGACACCGTCGCCCGGTAGTATCAAGGCGATCGAGGAGAG 968
consensus_8749#2      GGATGAGGAGCGT------ATGGATCAGCTGTCCAA------CCAGCTGAAGGAGGCGCG 587
consensus_8749#0      GCATGGCGAGGTGACCGTCAACGATCTGGTCACTAAGCTGTCCAAGCTG--CGCGACGAG 1018
                         **              *     * *    *         * **  *   * *  * *

consensus_8749#1      TTTGCTATCGAACGTGGCCACCGTGCTACCGACGGCGGGCAAACAGAAGCTTTGAGAGGG 1028
consensus_8749#2      TATGCTCGCTGAAGACGCCG--ATACCAAGTCCGACGAGGTGTC-----CCGCAAGCTGG 640
consensus_8749#0      TATGCACGCGGTGAGGATCA--GTTTTAAGCGGAATTGGCAACCATTTTTCCCCGGAAGC 1076
                      * ***   *         *    *   *          *    *           *  * 

consensus_8749#1      CTTTTGTTGCTGTAGGGGTAGG--TGTGTCCGCGTATTTCCGGTGCTGCAAGGATTTATT 1086
consensus_8749#2      CCTTCGTTGAAGACGAGCTGGA--AGTGGCTGAGGA------------------------ 674
consensus_8749#0      ATTTAGAGAGCGCTAACGTCGCGCAATTGCGCAAAACGCGTAAATTAGACAGGGTCTGAT 1136
                        ** *     *      * *     *  *     *                        

consensus_8749#1      TGTATAAAGGAGAGATAGATTTACGAAGTGATATAGAAGTCAATGATAAATAAAATGCCC 1146
consensus_8749#2      ------------------------------------------------------------
consensus_8749#0      AATTCTTTGATTTTTTTTTCTACGTAAGTTATTGCTCATCATTCGTTCTGCTTGGCCCAT 1196
                                                                                  

consensus_8749#1      CGCGAATTAAAAAAAAAAAA---------------- 1166
consensus_8749#2      ------------------------------------
consensus_8749#0      TCTTATTCGCGCTACAGATACTGAAATGGAATAAAA 1232
                                                          




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)