These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_878#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 792 fasta sequence [GCTTCATTGGGTAGCTTAAAATCACTTATTATACCGATAAAAAGAGCTTTACACTTTTCCACTAGACTACGTATTTAATTATCTTCCAGCATAATACCCTTTAGGCAGCTCTGTATCATTCGACAGTGGTGCAACAACATACATTTCTCCCACTACACGACAACCTAAAGAGCTTAATTTTGAATGTATCTTTTTTCCACCCGCCAACCTTGATTTCAACCCCAGCCTGTATAAAACCTACCGTGACAAGAAGTATCTCTACTTCCTGATGGAGGCCTGTCTCGGCGGTGACGTCTGGACCGTGCTGCAGAAGAGTAAGTTCTTCGACGAGCGCACCGCTCGCTTCATAACGGGCTGTGTCGTCGAAGCGTTCGAGTATCTGCACAGCCGGAACATGATCTACCGTGACTTGAAGCCGGAAAATCTAATGCTGGACGAGAAGGGCTACATCAAGCTGGTTGACTTTGGGTTTGCCAAGCGCATCGGACCGAACCAGAAGACGTGGACGTTCGCCGGTACGCCAGAGTACGTGTCGCCGGAAATCATCCTCAACAAGGGTCACGACCGGGCCGTCGACTACTGGGCGCTGGGTGTGCTGATTCACGAGCTGCTGGTCGGGAAGCCACCGTTCCGGGGCAAGAATCACATGAAGACGTACAATGCCATCCTGCGCGGTATTGACATCATTGAGCTACCGTCCCGCGTACCCAAGAAGGCACAGGTGCTGATTAAGCGCCTCTGCCGACAGACGGCGGCCGAACGGCTGGGGTACGGCAAGAACGGTATAGCCGA] [+] EMBL BX624510 [GCTTCATTGGGTAGCTTAAAATCACTTATTATACCGATAAAAAGAGCTTTACACTTTTCCACTAGACTACGTATTTAATTATCTTCCAGCATAATACCCTTTAGGCAGCTCTGTATCATTCGACAGTGGTGCAACAACATACATTTCTCCCACTACACGACAACCTAAAGAGCTTAATTTTGAATGTATCTTTTTTCCACCCGCCAACCTTGATTTCAACCCCAGCCTGTATAAAACCTACCGTGACAAGAAGTATCTCTACTTCCTGATGGAGGCCTGTCTCGGCGGTGACGTCTGGACCGTGCTGCAGAAGAGTAAGTTCTTCGACGAGCGCACCGCTCGCTTCATAACGGGCTGTGTCGTCGAAGCGTTCGAGTATCTGCACAGCCGGAACATGATCTACCGTGACTTGAAGCCGGAAAATCTAATGCTGGACGAGAAGGGCTACATCAAGCTGGTTGACTTTGGGTTTGCCAAGCGCATCGGACCGAACCAGAAGACGTGGACGTTCGCCGGTACGCCAGAGTACGTGTCGCCGGAAATCATCCTCAACAAGGGTCACGACCGGGCCGTCGACTACTGGGCGCTGGGTGTGCTGATTCACGAGCTGCTGGTCGGGAAGCCACCGTTCCGGGGCAAGAATCACATGAAGACGTACAATGCCATCCTGCGCGGTATTGACATCATTGAGCTACCGTCCCGCGTACCCAAGAAGGCACAGGTGCTGATTAAGCGCCTCTGCCGACAGACGGCGGCCGAACGGCTGGGGTACGGCAAGAACGGTATAGCCGA] consensusID : consensus_878#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 713 fasta sequence [GACGATGACAAATATTGTCTCAGAGTACGACCATATCCAGTTGCACGATCTGACCTACATCGGAACGCTTGGCATCGTTGGTTTCGGGCGGGTGGAGCTGGTCCAGTACAAAAACCACCAAACCTTTGCCCTCAAATATCTGAAAAAGATCGAAATGGTACGGCAGCAGCAGCAGGAGCACGCCTACAGCGAAAAGGACATCATGCTAAGCTGCAACAGTCCGTTCATCGTACGCCTGTATAAAACCTACCGTGACAAGAAGTATCTTTACTTTCTGATGGAGGCCTGTCTCGGCGGTGACGTCTGGACCGTGCTGCAGAAGAGTAAGTTCTTCGACGAGCGCACCGCTCGCTTCATAACGGGCTGTGTCGTCGAAGCGTTCGAGTATCTGCACAGCCGGAACATGATCTACCGTGACTTGAAGCCGGAAAATCTAATGCTGGACGAGAAGGGCTACATCAAGCTGGTTGACTTTGGGTTTGCCAAGCGCATCGGACCGAACCAGAAGACGTGGACGTTCGCCGGTACGCCAGAGTACGTGTCGCCGGAAATCATCCTCAACAAGGGTCACGACCGGGCCGTCGACTACTGGGCGCTGGGTGTGCTGATCCACGAGCTGCTGGTCGGGAAACCACCGTTCCGGGGCAAGAATCACATGAAGACGTACAATGCCATCCTGCGCGGTATTGACATCATTGAGCTACCGTCCCGCG] [+] EMBL BX615244 [GACGATGACAAATATTGTCTCAGAGTACGACCATATCCAGTTGCACGATCTGACCTACATCGGAACGCTTGGCATCGTTGGTTTCGGGCGGGTGGAGCTGGTCCAGTACAAAAACCACCAAACCTTTGCCCTCAAATATCTGAAAAAGATCGAAATGGTACGGCAGCAGCAGCAGGAGCACGCCTACAGCGAAAAGGACATCATGCTAAGCTGCAACAGTCCGTTCATCGTACGCCTGTATAAAACCTACCGTGACAAGAAGTATCTTTACTTTCTGATGGAGGCCTGTCTCGGCGGTGACGTCTGGACCGTGCTGCAGAAGAGTAAGTTCTTCGACGAGCGCACCGCTCGCTTCATAACGGGCTGTGTCGTCGAAGCGTTCGAGTATCTGCACAGCCGGAACATGATCTACCGTGACTTGAAGCCGGAAAATCTAATGCTGGACGAGAAGGGCTACATCAAGCTGGTTGACTTTGGGTTTGCCAAGCGCATCGGACCGAACCAGAAGACGTGGACGTTCGCCGGTACGCCAGAGTACGTGTCGCCGGAAATCATCCTCAACAAGGGTCACGACCGGGCCGTCGACTACTGGGCGCTGGGTGTGCTGATCCACGAGCTGCTGGTCGGGAAACCACCGTTCCGGGGCAAGAATCACATGAAGACGTACAATGCCATCCTGCGCGGTATTGACATCATTGAGCTACCGTCCCGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_878#0 -GCTTCATTGGGTA--GCTTAAAATCACTTATTATA-CCGATAAAAAGAGCT---TTACA 53 consensus_878#1 GACGATGACAAATATTGTCTCAGAGTACG-ACCATATCCAGTTGCACGATCTGACCTACA 59 * ** * * * * ** * *** ** * * ** ** **** consensus_878#0 CTTTTCCACTAGACTACGT--ATTTAATTATCTTCCAGCATAATACCCTTTAGGCAGCTC 111 consensus_878#1 TCGGAACGCTTGGCATCGTTGGTTTCGGGCGGGTGGAGC-TGGTCCAGTACAAAAACCAC 118 * ** * * *** *** * *** * * * * * * * * consensus_878#0 TGTATCATTCGAC---AGTGGTGCAACAACATACATTTCTCCCACTACACGACAACCTAA 168 consensus_878#1 CAAACCTTTGCCCTCAAATATCTGAAAAAGATCGAAATGGTACGGCA-GCAGCAGCAGGA 177 * * ** * * * ** ** ** * * * * * ** * * consensus_878#0 AGAGCTTAATTTTGAATGTATCTTTTTTCCACCCGCCAACCTTGATTTCAACCCCAGCCT 228 consensus_878#1 GCACGCCTACAGCGAAAAGGACATCATGCTAAGCTGCAACAGTCCGTTCATCGTACGCCT 237 * * *** * * * * * * **** * **** * **** consensus_878#0 GTATAAAACCTACCGTGACAAGAAGTATCTCTACTTCCTGATGGAGGCCTGTCTCGGCGG 288 consensus_878#1 GTATAAAACCTACCGTGACAAGAAGTATCTTTACTTTCTGATGGAGGCCTGTCTCGGCGG 297 ****************************** ***** *********************** consensus_878#0 TGACGTCTGGACCGTGCTGCAGAAGAGTAAGTTCTTCGACGAGCGCACCGCTCGCTTCAT 348 consensus_878#1 TGACGTCTGGACCGTGCTGCAGAAGAGTAAGTTCTTCGACGAGCGCACCGCTCGCTTCAT 357 ************************************************************ consensus_878#0 AACGGGCTGTGTCGTCGAAGCGTTCGAGTATCTGCACAGCCGGAACATGATCTACCGTGA 408 consensus_878#1 AACGGGCTGTGTCGTCGAAGCGTTCGAGTATCTGCACAGCCGGAACATGATCTACCGTGA 417 ************************************************************ consensus_878#0 CTTGAAGCCGGAAAATCTAATGCTGGACGAGAAGGGCTACATCAAGCTGGTTGACTTTGG 468 consensus_878#1 CTTGAAGCCGGAAAATCTAATGCTGGACGAGAAGGGCTACATCAAGCTGGTTGACTTTGG 477 ************************************************************ consensus_878#0 GTTTGCCAAGCGCATCGGACCGAACCAGAAGACGTGGACGTTCGCCGGTACGCCAGAGTA 528 consensus_878#1 GTTTGCCAAGCGCATCGGACCGAACCAGAAGACGTGGACGTTCGCCGGTACGCCAGAGTA 537 ************************************************************ consensus_878#0 CGTGTCGCCGGAAATCATCCTCAACAAGGGTCACGACCGGGCCGTCGACTACTGGGCGCT 588 consensus_878#1 CGTGTCGCCGGAAATCATCCTCAACAAGGGTCACGACCGGGCCGTCGACTACTGGGCGCT 597 ************************************************************ consensus_878#0 GGGTGTGCTGATTCACGAGCTGCTGGTCGGGAAGCCACCGTTCCGGGGCAAGAATCACAT 648 consensus_878#1 GGGTGTGCTGATCCACGAGCTGCTGGTCGGGAAACCACCGTTCCGGGGCAAGAATCACAT 657 ************ ******************** ************************** consensus_878#0 GAAGACGTACAATGCCATCCTGCGCGGTATTGACATCATTGAGCTACCGTCCCGCGTACC 708 consensus_878#1 GAAGACGTACAATGCCATCCTGCGCGGTATTGACATCATTGAGCTACCGTCCCGCG---- 713 ******************************************************** consensus_878#0 CAAGAAGGCACAGGTGCTGATTAAGCGCCTCTGCCGACAGACGGCGGCCGAACGGCTGGG 768 consensus_878#1 ------------------------------------------------------------ consensus_878#0 GTACGGCAAGAACGGTATAGCCGA 792 consensus_878#1 ------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||