These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_88#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 656 fasta sequence [CCGATTTGAGCGTTCCCAAGAAACGCAGGCAACAGCAAAAAAACGGACCATGTTTTTTGCACCCTTCATGTGGCGAGTGCGTTTGGCTTAGTTTTCGAAAAAAAGAAAAAGCGACCCTGAAAAACAAACACACTCACCATGTCCACGGAAGCCTTGGAGACGGCTGCGCGGAACGATGCTGGCCGGGATACGCGATGTCGCCTGTGCCTGAAGCAGATCGAAATAGCACAGACGGCCGGCATCGATTTGCTGGAAAATCAGGACATCAACCGCCTACTGCTCGATGTGTACCGGGTGGAGGTACTGCAAACCGATGAGGGTCCAACGATGATCTGCGTGCCTTGCTACGTACAGCTCGTACACCACTACAAACTTCGGATACGCTGTCTGTCGCTGAGGAAAAACTTCCGGCTAAATCAGTCGGTGCTGCTCGCCCAGATCAACGCATTCCGCGCTATCGCCGGGGAGGCGCGCATTGCGAGCATCAACGAACTCGCTGAAAGTGCGCCACAATGCAGCAACGGCACGGCGGTGCAGGAGAGGGGTACCCAGACAGACGTTGTTAGTCTGCCGTCACCGGCAAAGTCCAGTGCACCAGAACCAAATACCGCACTGGTCGGTATGCCGAACCGGCCAGAACCAAATGCCGAACCGGC] [+] EMBL BM579076 [CCGATTTGAGCGTTCCCAAGAAACGCAGGCAACAGCAAAAAAACGGACCATGTTTTTTGCACCCTTCATGTGGCGAGTGCGTTTGGCTTAGTTTTCGAAAAAAAGAAAAAGCGACCCTGAAAAACAAACACACTCACCATGTCCACGGAAGCCTTGGAGACGGCTGCGCGGAACGATGCTGGCCGGGATACGCGATGTCGCCTGTGCCTGAAGCAGATCGAAATAGCACAGACGGCCGGCATCGATTTGCTGGAAAATCAGGACATCAACCGCCTACTGCTCGATGTGTACCGGGTGGAGGTACTGCAAACCGATGAGGGTCCAACGATGATCTGCGTGCCTTGCTACGTACAGCTCGTACACCACTACAAACTTCGGATACGCTGTCTGTCGCTGAGGAAAAACTTCCGGCTAAATCAGTCGGTGCTGCTCGCCCAGATCAACGCATTCCGCGCTATCGCCGGGGAGGCGCGCATTGCGAGCATCAACGAACTCGCTGAAAGTGCGCCACAATGCAGCAACGGCACGGCGGTGCAGGAGAGGGGTACCCAGACAGACGTTGTTAGTCTGCCGTCACCGGCAAAGTCCAGTGCACCAGAACCAAATACCGCACTGGTCGGTATGCCGAACCGGCCAGAACCAAATGCCGAACCGGC] consensusID : consensus_88#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 454 fasta sequence [TTGACGAACGTGGTGACCATTTCGCAGGTACTGCAAACCGATGAGGGTCCAACGATGATCTGCGTGCCTTGCTACGTACAGCTCGTACACCACTACAAACTTCGGATACGCTGTCTGTCGCTGAGGAAAAACTTCCGGCTAAATCAGTCGGTGCTGCTCGCCCAGATCAACGCATTCCGCGCTATCGCCGGGGAGGCGCGCATTGCGAGCATGAACGAACTCGCTGAAAGTGCGCCACAATGCAGCAACGGCACGGCGGTGCAGGAGAGGGGTACCCAGACAGACGTTGTTAGCCTGCCGTCACCGGCAAAGTCCAGTGCACCAGAACCAAATGCCGAACCGGCCGTGGAAAAGGAATCGGCCACTATTGTTATCGACGATGAATCGAGGGAAGGATCGGTTGTGACCGTACAAAGCGAAGTAATGGCAGATCTGATGAATGCAGCTTGAAAAC] [+] EMBL BX606921 [TTGACGAACGTGGTGACCATTTCGCAGGTACTGCAAACCGATGAGGGTCCAACGATGATCTGCGTGCCTTGCTACGTACAGCTCGTACACCACTACAAACTTCGGATACGCTGTCTGTCGCTGAGGAAAAACTTCCGGCTAAATCAGTCGGTGCTGCTCGCCCAGATCAACGCATTCCGCGCTATCGCCGGGGAGGCGCGCATTGCGAGCATGAACGAACTCGCTGAAAGTGCGCCACAATGCAGCAACGGCACGGCGGTGCAGGAGAGGGGTACCCAGACAGACGTTGTTAGCCTGCCGTCACCGGCAAAGTCCAGTGCACCAGAACCAAATGCCGAACCGGCCGTGGAAAAGGAATCGGCCACTATTGTTATCGACGATGAATCGAGGGAAGGATCGGTTGTGACCGTACAAAGCGAAGTAATGGCAGATCTGATGAATGCAGCTTGAAAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_88#0 CCGATTTGAGCGTTCCCAAGAAACGCAGGCAACAGCAAAAAAACGGACCATGTTTTTTGC 60 consensus_88#1 ------------------------------------------------------------ consensus_88#0 ACCCTTCATGTGGCGAGTGCGTTTGGCTTAGTTTTCGAAAAAAAGAAAAAGCGACCCTGA 120 consensus_88#1 ------------------------------------------------------------ consensus_88#0 AAAACAAACACACTCACCATGTCCACGGAAGCCTTGGAGACGGCTGCGCGGAACGATGCT 180 consensus_88#1 ------------------------------------------------------------ consensus_88#0 GGCCGGGATACGCGATGTCGCCTGTGCCTGAAGCAGATCGAAATAGCACAGACGGCCGGC 240 consensus_88#1 ------------------------------------------------------------ consensus_88#0 ATCGATTTGCTGGAAAATCAGGACATCAACCGCCTACTGCTCGATGTGTACCGGGTGGAG 300 consensus_88#1 ---------------------------------TTGACGAACGTGGTGACCATTTCGCAG 27 * * ** *** * * ** consensus_88#0 GTACTGCAAACCGATGAGGGTCCAACGATGATCTGCGTGCCTTGCTACGTACAGCTCGTA 360 consensus_88#1 GTACTGCAAACCGATGAGGGTCCAACGATGATCTGCGTGCCTTGCTACGTACAGCTCGTA 87 ************************************************************ consensus_88#0 CACCACTACAAACTTCGGATACGCTGTCTGTCGCTGAGGAAAAACTTCCGGCTAAATCAG 420 consensus_88#1 CACCACTACAAACTTCGGATACGCTGTCTGTCGCTGAGGAAAAACTTCCGGCTAAATCAG 147 ************************************************************ consensus_88#0 TCGGTGCTGCTCGCCCAGATCAACGCATTCCGCGCTATCGCCGGGGAGGCGCGCATTGCG 480 consensus_88#1 TCGGTGCTGCTCGCCCAGATCAACGCATTCCGCGCTATCGCCGGGGAGGCGCGCATTGCG 207 ************************************************************ consensus_88#0 AGCATCAACGAACTCGCTGAAAGTGCGCCACAATGCAGCAACGGCACGGCGGTGCAGGAG 540 consensus_88#1 AGCATGAACGAACTCGCTGAAAGTGCGCCACAATGCAGCAACGGCACGGCGGTGCAGGAG 267 ***** ****************************************************** consensus_88#0 AGGGGTACCCAGACAGACGTTGTTAGTCTGCCGTCACCGGCAAAGTCCAGTGCACCAGAA 600 consensus_88#1 AGGGGTACCCAGACAGACGTTGTTAGCCTGCCGTCACCGGCAAAGTCCAGTGCACCAGAA 327 ************************** ********************************* consensus_88#0 CCAAATACCGCACTGGTCG-GTATGCCGAACCGGCCAGAACCA-----AATGCCGAACCG 654 consensus_88#1 CCAAATGCCGAACCGGCCGTGGAAAAGGAATCGGCCACTATTGTTATCGACGATGAATCG 387 ****** *** ** ** ** * * *** ****** * * * *** ** consensus_88#0 GC---------------------------------------------------------- 656 consensus_88#1 AGGGAAGGATCGGTTGTGACCGTACAAAGCGAAGTAATGGCAGATCTGATGAATGCAGCT 447 consensus_88#0 ------- consensus_88#1 TGAAAAC 454 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||