cluster # 8817

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Anopheles gambiae
cluster # 8817 cluster # 8817 Sequences # 12 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8817#0 length = 1439 sequences # 7
consensus_8817#1 length = 1035 sequences # 3

consensus_8817#2 length = 667 sequences # 1
consensus_8817#3 length = 650 sequences # 1

consensusID : consensus_8817#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1439
fasta sequence

                              [AACGAGGTTGCTGTGGCAATAACGTTAGAAACCGTGCAAACAGATCGCCGTCTAGAGGAATCGATTTTCGGGTGAATTGCTAATCATTTTC-AATCCTACCATCGGCCGAACCTAGACACGTTCTGTAGTAGTATTCACGATCTCGGACTAACTTCCGATTTTGCTAATTTAATCTAAATTCATATCGCGGCTTTCGCGAAGTAGCCAGACGGGCCCAAGTTAAGCTCTCTTTCATCGTGATAAGTGCAGTGACATAAAAGCGATTCAGCGG--TGCAGCGGCTTTGTTCATGTGAAAGCGTAGTAGAGTGTCTGTTGCAACACACCATCGCCGCGTGTCGTGGCAAGATACAATGTCCTCGGTGGAAAATGCAGAAAATGGCGTAGGAAAATACTCTTATCAGACGGTGTACTACATCATAACCA-ACAACAACAACAACAGCACCGAAGAAGGCGAATCGGA-TCAGGTGGAAAATTTGCACGCGATTACTGCAGCGGTCGACAGTGAGCTAACGCGGAAG-GTC-GGAGAATCGAGGCAATAAAGATGCAGGGACAAATTCCCGGCGCCGCTGCGGTGCAGGT-CCAGGGTGGATCACCCCAAGCCGCAGCCCTAGCAGCACAACAGCAGCAGCAGCAGCAACAACAAAGCATTTCGGTAAAGATGGACCCAGCGAATCAGCTGTCCTCTGCTGGGTTGTTGGAGCTGGCACACCGAGAATACCAGGCGGTCGATTACGACAACGCCGAACGGCACTGCATGCAGCTGTGGCGGCAGGAAAGCAACAACACGGGCGTACTGCTGCTACTGTCGTCGATACACTTCCAGTGCAGACGGCTGGACAAATCAGCTCAATTCTCTACACTGGCCATCAAGCAGAACCCGCTGCTTGCCGAAGCGTACAGCAATCTGGGTAATGTTTATAAGGAGCGCGGACAGCTCCAGGAAGCCCTAGAAAACTACCGACATGCAGTGCGTCTGAAGCCCGATTTCATTGACGGGTACATCAACTTGGCCGCTGCATTAGTTGCCGCTCGTGACATGGAACAGGCAGTGCAAGCGTACGTCACCGCTCTGCAATACAACCCGGATCTGTACTGCGTGAGAAGTGATTTGGGAAATCTACTGAAAGCACTGGGAAGACTTGACGAAGCGAAGCACGAGATGCCACACACGCATAACTTTAGTTTATTATATTGCATGACGTGAGCGTTTCCATCAGGCAGATGATGATGATGGATTGACAAAACCACTGTCGACGGCGAACGAACAAGTCTCGACAGGAGGGCGAAGGAATGCGATTGATTGAAACGCTCGCTTGGGTTATTTTCTATTATATCGTATCACTAAATCGTGGATCCAGCCGATCGCAGTTATTGATCGTCCAGAAATGGTTCGGCAGCAAATGAAAAAAAAAGATAACTGTGCGTGTGTAGTAGCTGTG]

[+] EMBL CNS09CHA             [AACGAGGTTGCTGTGGCAATAACGTTAGAAACCGTGCAAACAGATCGCCGTCCAGAGGAATCGATTTTCGGGTGAATTGCTAATCGTTTTC AATCCTACCATCGGCCGAACCTAGACACGTTCTGTAGTAGTATTCACGATCTCGGACTAACTTCCGATTTTGCTAATTTAATCTAAATTCATATCGCGGCTTTCGCGAAGTAGCCAGACGGGCCCAAGTTAAGCTCTCTTTCATCGTGATAAGTGCAGTGACATAAAAGCGATTCAGCGG  TGCAGCGGCTTTGTTCATGTGAAAGCGTAGTAGAGTGTCTGTTGCAACACACCATCGCCGCGTGTCGTGGCAAGATACAATGTCCTCGGTGGAAAATGCAGAAAATGGCGTAGGAAAATACTCTTATCAGACGGTGTACTACATCATAACCA ACAACAACAACAACAGCACCGAAGAAGGCGAATCGGATTCAGGTGGAAAATTTGCACGCGATTACTGCAGCGGTCGACAGTGAGCTAACGCGGAAG GTC GGAGAATCGAGGCAATAAAGATGCAGGGACAAATTCCCGGCGCCGCTGCGGTGCAGGT CCAGGGTGGATCACCCCAAGCCGCAGCCCTAGCAGCACAACAGCAGCAGCAGCAGCAACAACAAAGCATTTCGGTAAAGATGGACCCAGCGAATCAGCTGTCCTCTGCTGGGTTGTTGGAGCTGGCACACCGAGAATACCAGGCGGTCGATTACGACAACGCCGAACGGCACTGCATGCAGCTGTGGCGGCAGGAAAGCAACAACACGGGCGTACTGCTGCTACTGTCGTCGATACACTTCCAGTGCAGACGGCTGGACAAATCAGCTCAATTCTCTACACTGGCCATCAAGCAGAACCCGCTGCTTGCCGAAGCGTACAGCAATCTGGGTTATGTTTATAAGGAGCGCGGACA CTCCAGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CNS099NB             [                           GAAACCGTGCAAACAGATCGCCGTCTAGAGGAATCGATTTTCGGGTGAATTGCTAATCATTTTC AATCCTACCATCGGCCGAACCTAGACACGTTCTGTAGTAGTATTCACGATCTCGGACTAACTTCCGATTTTGCTAATTTAATCTAAATTCATATCGCGGCTTTCGCGAAGTAGCCAGACGGGCCCAAGTTAAGCTCTCTTTCATCGTGATAAGTGCAGTGACATAAAAGCGATTCAGCGG  TGCAGCGGCTTTGTTCATGTGAAAGCGTAGTAGAGTGTCTGTTGCAACACACCATCGCCGCGTGTCGTGGCAAGATACAATGTCCTCGGTGGAAAATGCAGAAAATGGCGTAGGAAAATACTCTTATCAGACGGTGTACTACATCATAACCACACAACAACAACAACAGCACCGAAGAAGGCGAATCGGA TCAGGTGGAAAATTTGCACGCGATTACTGCAGCGGTCGACAGTGAGCTAACGCGGAAG GTCGGGAGAATCGAGGCAATAAAGATGCAGGGACAAATTCCCGGCGCCGCTGCGGTGCAGGT CCAGGGTGGATCACCCCAAGCCGCAGCCCTAGCAGCACAACAGCAGCAGCAGCAGCAACAACAAAGCATTTCGGTAAAGATGGACCCAGCGAATCAGCTGTCCTCTGCTGGGTTGTTGGAGCTGGCACACCGAGAATACCAGGCGGTCGATTACGACAACGCCGAACGGCACTGCATGCAGCTGTGGCGGCAGGAAAGCAACAACACGGGCGTACTGCTGCTACTGTCGTCGATACACTTCCAGTGCAGACGGCTGGACAAATCAGCTCAATTCTCTACACTGGCCATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BM613067             [                                 ccGCAAACAGATCGCCGTCTAGAGGAATCGATTTTCGGATGAATTGCTAATCACTCTC AATCCTACCATCGGCCGAGCCTAGACACGTTCTGTAGTAGTATTCACGATCTCGGACTAACTTCCGATTTTTCTAATTTAATCTAAATTCATATCGCGGCTTTCGCGAAGTAGCCAGACGGGCCCAAGTTAAGCTCTCTTTCATCGTGATAAGTGTAGTGACATAAAAGCGATTCAGCGG  TGCAGCGGCTTTGTTCATGTGAAAGCGTAGTAGTGTGTCTGTTGCACCACACCATCGCCGCGTGTCGTGGCAAGATACAATGTCCTCGGTGGAAAATGCAGAAAATGGCGTAGGAAAATACTCTTATCAGACGGTGTACTACATCATAACCA ACAACAACAACAACAGCACCGAAGAAGGCGAATCGGA TCAGGTGGAAAATTTGCACGCGATTACTGCAGCGGTCGACAGTGAGCTAACGCGGAAGCGTC GGAGAATCGAGGCAATAAAGATGCAGGGACAAATTCCCGGTGCCGCTGCGGTGCAGGT CCAGGGTGGATCACCGCAAGCCGCAGCCCTAGCAGC   ACAGCAGCAGCAGCAGCAACAACAAAGCATTTCGGTAAAGATGGACCCAGCGAATCAGCTGTCCTCTGCTGGGTTGTTGGAGCTGGCACACCGAGAATACCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CNS09GA7             [                                                  TCTAGAGGAATCGATTTTCGGGTGAATTGCTAATCATTTTCAAATCCTACCATCGGCCGAACCTAGACACGTTCTGTAGTAGTATTCACGATCTCGGACTAACTTCCGATTTTGCTAATTTAATCTAAATTCATATCGCGGCTTTCGCGAAGTAGCCAGACGGGCCCAAGTTAAGCTCTCTTTCATCGTGATAAGTGCAGTGACATAAAAGCGATTCAGCGGGCTGCAGCGGCTTTGTTCATGTGAAAGCGTAGTAGAGTGTCTGTTGCAACACACCATCGCCGCGTGTCGTGGCAAGATACAATGTCCTCGGTGGAAAATGCAGAAAATGGCGTAGGAAAATACTCTTATCAGACGGTGTACTACATCATAACCA ACAACAACAACAACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CNS09CHB             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TC GGAGAATCGAGGCAATAAAGATGCAGGGACAAATTCCCGGCGCCGCTGCGGTGCAGGT CCAGGGTGGATCACCCCAAGCCGCAGCCCTAGCAGCACAACAGCAGCAGCAGCAGCAACAACAAAGCATTTCGGTAAAGATGGACCCAGCGAATCAGCTGTCCTCTGCTGGGTTGTTGGAGCTGGCACACCGAGAATACCAGGCGGTCGATTACGACAACGCCGAACGGCACTGCATGCAGCTGTGGCGGCAGGAAAGCAACAACACGGGCGTACTGCTGCTACTGTCGTCGATACACTTCCAGTGCAGACGGCTGGACAAATCAGCTCAATTCTCTACACTGGCCATCAAGCAGAACCCGCTGCTTGCCGAAGCGTACAGCAATCTGGGTAATGTTTATAAGGAGCGCGGACAGCTCCAGGAAGCCCTAGAAAACTACCGACATGCAGTGCGTCTGAAGCCCGATTTCATTGACGGGTACATCAACTTGGCCGCTGCATTAGTTGCCGCTCGTGACATGGAACAGGCAGTGCAAGCGTACGTCACCGCTCTGCAATACAACCCGGATCTGTACTGCGTGAGAAGTGATTTGGGAAATCTACTGAAAGCACTGGGAAGACTTGACGAAGCGAAGCACGAGATGCCACACACGCATAACTTTAGTTTATTATATTGCATGACGTGAGCGTTTCCATCAGGCAGATGATGATGATGGATTGACAAAGCCACTGTCGACGGCGAACGAACAAGTCTCGACAGGAGGGCGAAGGAATGCGATTGATTGAAACGCTCGCTTGGGTTATTTTCTATTATATCGTATCACTAAATCGTGGATCCAGCCGATCGCAGTTATTGATC                                                              ]
[-] EMBL CNS099NC             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GCAGGTCCCAGGGT GATCACCCCAAGCCGCAGCCCTAGCAGCACAACAGCAGCAGCAGCAGCAACAACAAAGCATTTCGGTAAAGATGGACCCAGCGAATCAGCTGTCCTCTGCTGGGTTGTTGGAGCTGGCACACCGAGAATACCAGGCGGTCGATTACGACAACGCCGAACGGCACTGCATGCAGCTGTGGCGGCAGGAAAGCAACAACACGGGCGTACTGCTGCTACTGTCGTCGATACACTTCCAGTGCAGACGGCTGGACAAATCAGCTCAATTCTCTACACTGGCCATCAAGCAGAACCCGCTGCTTGCCGAAGCGTACAGCAATCTGGGTAATGTTTATAAGGAGCGCGGACAGCTCCAGGAAGCCCTAGAAAACTACCGACATGCAGTGCGTCTGAAGCCTGATTTCATTGACGGGTACATCAACTTGGCCGCTGCATTAGTTGCCGCTCGTGACATGGAACAGGCAGTGCAAGCGTACGTCACCGATCTGCAATACAACCCGGATCTGTACTGCGTGAGAAGTGATTTGGGAAATCTACTGAAAGCACTGGGAAGACTTGACGAAGCGAAGCACGAGATGCCACACACGCATAACTTTAGTTTATTATATTGCATGACGTGAGCGTTTCCATCAGGCAGATGATGATGATGGATTGACAAAACCACTGTCGACGGCGAACGAACAAGTCTCGACAGGAGGGCGAAGGAATGCGATTGATTGAAACGCTCGCTTGCATTATTTTCTATTATATCGTATCAC AAATCGTGGATCCAGCCGATCGCAGTTATTGATCGTCCAGAAATGGTTCGGCAGCAAATGAAAAAAAAAGATAACTGTGCGTGTGTAGTAGCTGTG]
[-] EMBL CNS09GA8             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TTGCCGCTCGTGACATGGAACAGGCAGTGCAAGCGTACGTCACCGCTCTGCAATACAACCCGGATCTGTACTGCGTGAGAAGTGATTTGGGAAATCTACTGAAAGCACTGGGAAGACTTGACGAAGCGAAGCACGAGATGCCACACACGCATAACTTTAGTTTATTATATTGCATGACGTGAGCGTTTCCATCAGGCAGATGATGATGATGGATTGACAAAACCACTGTCGACGGCGAACGAACAAGTCTCGACAGGAGGGCG                                                                                                                                                          ]




>consensus_8817#0
AACGAGGTTGCTGTGGCAATAACGTTAGAAACCGTGCAAACAGATCGCCGTCTAGAGGAA
TCGATTTTCGGGTGAATTGCTAATCATTTTCAATCCTACCATCGGCCGAACCTAGACACG
TTCTGTAGTAGTATTCACGATCTCGGACTAACTTCCGATTTTGCTAATTTAATCTAAATT
CATATCGCGGCTTTCGCGAAGTAGCCAGACGGGCCCAAGTTAAGCTCTCTTTCATCGTGA
TAAGTGCAGTGACATAAAAGCGATTCAGCGGTGCAGCGGCTTTGTTCATGTGAAAGCGTA
GTAGAGTGTCTGTTGCAACACACCATCGCCGCGTGTCGTGGCAAGATACAATGTCCTCGG
TGGAAAATGCAGAAAATGGCGTAGGAAAATACTCTTATCAGACGGTGTACTACATCATAA
CCAACAACAACAACAACAGCACCGAAGAAGGCGAATCGGATCAGGTGGAAAATTTGCACG
CGATTACTGCAGCGGTCGACAGTGAGCTAACGCGGAAGGTCGGAGAATCGAGGCAATAAA
GATGCAGGGACAAATTCCCGGCGCCGCTGCGGTGCAGGTCCAGGGTGGATCACCCCAAGC
CGCAGCCCTAGCAGCACAACAGCAGCAGCAGCAGCAACAACAAAGCATTTCGGTAAAGAT
GGACCCAGCGAATCAGCTGTCCTCTGCTGGGTTGTTGGAGCTGGCACACCGAGAATACCA
GGCGGTCGATTACGACAACGCCGAACGGCACTGCATGCAGCTGTGGCGGCAGGAAAGCAA
CAACACGGGCGTACTGCTGCTACTGTCGTCGATACACTTCCAGTGCAGACGGCTGGACAA
ATCAGCTCAATTCTCTACACTGGCCATCAAGCAGAACCCGCTGCTTGCCGAAGCGTACAG
CAATCTGGGTAATGTTTATAAGGAGCGCGGACAGCTCCAGGAAGCCCTAGAAAACTACCG
ACATGCAGTGCGTCTGAAGCCCGATTTCATTGACGGGTACATCAACTTGGCCGCTGCATT
AGTTGCCGCTCGTGACATGGAACAGGCAGTGCAAGCGTACGTCACCGCTCTGCAATACAA
CCCGGATCTGTACTGCGTGAGAAGTGATTTGGGAAATCTACTGAAAGCACTGGGAAGACT
TGACGAAGCGAAGCACGAGATGCCACACACGCATAACTTTAGTTTATTATATTGCATGAC
GTGAGCGTTTCCATCAGGCAGATGATGATGATGGATTGACAAAACCACTGTCGACGGCGA
ACGAACAAGTCTCGACAGGAGGGCGAAGGAATGCGATTGATTGAAACGCTCGCTTGGGTT
ATTTTCTATTATATCGTATCACTAAATCGTGGATCCAGCCGATCGCAGTTATTGATCGTC
CAGAAATGGTTCGGCAGCAAATGAAAAAAAAAGATAACTGTGCGTGTGTAGTAGCTGTG

consensusID : consensus_8817#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1035
fasta sequence

                              [CCGGCAGCAGCAGCAGCAAGCCACTGCTGACGATGTTAATTCTCAGAAAAGATGGCGATTAGTTGGTGTGCTTCGTGATTGAAATCGCTCGGCAATTATTAGCCTTAAAAAAAGAGTAAAATTGCGGCGTGAATGTGTGTGTTTATGTGTGTGCTATTTGCAATATTGTTCCTAAGTCGCCACAGTGTCAAAATCAGTGCTGAAATCGAGAGGCTAAGGTGTTGTTGATCTGGCTCCCCTGGAGTGTGGTGTGTGGCACGTAGTTTATATAACAAATTGATACTAACGGCAAGCAAACGTGGTTTTGTATTTCCCATCTACCTTCTACGTTCCGTTTCACTTCCCTCG-GTGCCGCTGCTACACAATGTGGTGATTGGCTGCGAACGGTGACTACCTTTTCATCCATCGGGCCTGCGGACACTACATACAGATTACTGCAGCGGTCGACAGTGAGCTAACGCGGAAGCGTCGGAGAATCGAGGCAATAAAGATGCAGGGACAAATTCCCGGTGCCGCTGCGGTGCAGGTCCAGGGTGGATCACCGCAAGCCGCAGCCCTAGCAGC---ACAGCAGCAGCAGCAGCAACAAC-AAAGCATTT-CGGTAAAGATGGACCCAGC-GAATCAGCTGTCC-TCTGCTGGGTTGTTGGAGCTGGCACACCGAG-AATACCA-GGCGGTCGATTACGACAACGCCGAACGGCACTGCATGCAGCTGTGGCGGCAGGAAAGCAACAACACGGGCGTACTGCTGCTACTGTCGTCGATACACTTCCAGTGCAGACGGCTGGACAAATCAGCCCAATTCTCTACACTGGCCATCAAGCAGAACCCGCTGCTTGCCGAAGCGTACAGCAATCTGGGTAATGTTTATAAGGAGCGCGGACAGCTCCAGGAAGCCCTAGAAAACTACCGACATGCAGTGCGTCTGAAGCCCGATTTCATTGACGGGTACATCAACTTGGCCGCTGCATTAGTTGCCGCTCGTGTACATGGAACAGGCAGTGCAAGCGTACGTCACCGCTCTGCAATACAACCCGGATC]

[+] EMBL BM583003             [CCGGCAGCAGCAGCAGCAAGCCACTGCTGACGATGTTAATTCTCAGAAAAGATGGCGATTAGTTGGTGTGCTTCGTGATTGAAATCGCTCGGCAATTATTAGCCTTAAAAAAAGAGTAAAATTGCGGCGTGAATGTGTGTGTTTATGTGTGTGCTATTTGCAATATTGTTCCTAAGTCGCCACAGTGTCAAAATCAGTGCTGAAATCGAGAGGCTAAGGTGTTGTTGATCTGGCTCCCCTGGAGTGTGGTGTGTGGCACGTAGTTTATATAACAAATTGATACTAACGGCAAGCAAACGTGGTTTTGTATTTCCCATCTACCTTCTACGTTCCGTTTCACTTCCCTCG GTGCTGCTGCTACACAATGTGGTGATTGGCTGCGAACGGTGACTACCTTTTCATCCATCGGGCCTGCGGACACTACATACAGATTACTGCAGCGGTCGACAGTGAGCTAACGCGGAAGCGTCGGAGAATCGAGGCAATAAAGATGCAGGGACAAATTCCCGGTGCCGCTGCGGTGCAGGTCCAGGGTGGATCACCGCAAGCCGCAGCCCTAGCAGC   ACAGCAGCAGCAGCAGCAACAACAAAAGCATTTCCGGTAAAGATGGACCCAGCAGAATCAGCTGTCCTTCTGCTGGGTTGTTGGAGCTGGCACACCGAGAAATACCAGGGCGGTCGATTACGACAACGCCGAACGGCACctg                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BM608454             [                                                                                                                                                                                                                                                                                                                                                   ccgCCCACGCGT CCGCTGCTACACAATGTGGTGATTGGCTGCGAACGGTGACTACCTTTTCATCCATCGGGCCTGCGGACACTACATACAGATTACTGCAGCGGTCGACAGTGAGCTAACGCGGAAGCGTCGGAGAATCGAGGCAATAAAGATGCAGGGACAAATTCCCGGTGCCGCTGCGGTGCAGGTCCAGGGTGGATCACCGCAAGCCGCAGCCCTAGCAGC   ACAGCAGCAGCAGCAGCAACAAC AAAGCATTT CGGTAAAGATGGACCCAGC GAATCAGCTGTCC TCTGCTGGGTTGTTGGAGCTGGCACACCGAG AATACCA GGCGGTCGATTACGACAACGCCGAACGGCACTGCATGCAGCTGTGGCGGCAGGAAAGCAACAACACGGGCGTACTGCTGCTACTGTCGTCGATACACTTCCAGTGCAGACGGCTGGACAAATCAGCCCAATTCTCTACACTGGCCATCAAGCAGAACCCGCTGCTTGCCGAAGCGTA                                                                                                                                                                                                ]
[+] EMBL BM604305             [                                                                                                                                                                                                                                                                                                                                                                CCGCTGCTACACAATGTGGTGATTGGCTGCGAACGGCGACTACCTTTTCATCCATCGGGCCTGCGGACATTACACACAGATTACTGCAGCGGTCGACAGTGAGCTAACGCGGAAGCGTCGGAGAATCGAGGCAATAAAGATGCAGGGACAAATTCCCGGTGCCGCTGCGGTGCAGGTCCAGGGTGGATCACCCCAAGCCGCAGCCCTAGCAGCACAACAGCAGCAGCAGCAGCAACAAC AAAGCATTT CGGTAAAGATGGACCCAGC GAATCAGCTGTCC TCTGCTGGGTTGTTGGAGCTGGCACACCGAG AATACCA GGCGGTCGATTACGACAACGCCGAACGGCACTGCATGCAGCTGTGGCGGCAGGAAAGCAACAACACGGGCGTACTGCTGCTACTGTCATCGATACACTTCCAGTGCAGACGGCTGGACAAATCAGCTCAATTCTCTACACTGGCCATCAAGCAGAACCCGCTGCTTGCCGAAGCGTACAGCAATCTGGGTAATGTTTATAAGGAGCGCGGACAGCTCCAGGAAGCCCTAGAAAACTACCGACATGCAGTGCGTCTGAAGCCCGATTTCATTGACGGGTACATCAACTTGGCCGCTGCATTAGTTGCCGCTCGTGTACATGGAACAGGCAGTGCAAGCGTACGTCACCGCTCTGCAATACAACCCGGATC]




>consensus_8817#1
CCGGCAGCAGCAGCAGCAAGCCACTGCTGACGATGTTAATTCTCAGAAAAGATGGCGATT
AGTTGGTGTGCTTCGTGATTGAAATCGCTCGGCAATTATTAGCCTTAAAAAAAGAGTAAA
ATTGCGGCGTGAATGTGTGTGTTTATGTGTGTGCTATTTGCAATATTGTTCCTAAGTCGC
CACAGTGTCAAAATCAGTGCTGAAATCGAGAGGCTAAGGTGTTGTTGATCTGGCTCCCCT
GGAGTGTGGTGTGTGGCACGTAGTTTATATAACAAATTGATACTAACGGCAAGCAAACGT
GGTTTTGTATTTCCCATCTACCTTCTACGTTCCGTTTCACTTCCCTCGGTGCCGCTGCTA
CACAATGTGGTGATTGGCTGCGAACGGTGACTACCTTTTCATCCATCGGGCCTGCGGACA
CTACATACAGATTACTGCAGCGGTCGACAGTGAGCTAACGCGGAAGCGTCGGAGAATCGA
GGCAATAAAGATGCAGGGACAAATTCCCGGTGCCGCTGCGGTGCAGGTCCAGGGTGGATC
ACCGCAAGCCGCAGCCCTAGCAGCACAGCAGCAGCAGCAGCAACAACAAAGCATTTCGGT
AAAGATGGACCCAGCGAATCAGCTGTCCTCTGCTGGGTTGTTGGAGCTGGCACACCGAGA
ATACCAGGCGGTCGATTACGACAACGCCGAACGGCACTGCATGCAGCTGTGGCGGCAGGA
AAGCAACAACACGGGCGTACTGCTGCTACTGTCGTCGATACACTTCCAGTGCAGACGGCT
GGACAAATCAGCCCAATTCTCTACACTGGCCATCAAGCAGAACCCGCTGCTTGCCGAAGC
GTACAGCAATCTGGGTAATGTTTATAAGGAGCGCGGACAGCTCCAGGAAGCCCTAGAAAA
CTACCGACATGCAGTGCGTCTGAAGCCCGATTTCATTGACGGGTACATCAACTTGGCCGC
TGCATTAGTTGCCGCTCGTGTACATGGAACAGGCAGTGCAAGCGTACGTCACCGCTCTGC
AATACAACCCGGATC

consensusID : consensus_8817#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 667
fasta sequence

                              [CCGCTTCGTGATTGAAATCGCTCGGCAATTATTAGCCTCAAAAAAGAGTAAAATAGCGGCGTGAGTGTGTGTGTTTATGTGTGCGATATTTGCAATATTGTTCCTAAGTCGCCATAGTGTCAAAATCAGTGCTGAAATCGAGAGGCTAAGGTGTTGTTGATCTGGCTCCCCTGGAGTGTGATTACTGCAGCGGTCGACAGTGAGCTAACGCGGAAGCGTCGGAGAATCGAGGCAATAAAGATGCAGGGACAAATTCCCGGTGCCGCTGCGGTGCAGGTCCAGGGTGGATCACCCCAAGCCGCAGCCCTAGCAGCACAACAGCAGCAGCAGCAGCAACAACAAAGCATTTCGGTAAAGATGGACCCAGCGAATCAGCTGTCCTCTGCTGGGTTGTTGGAGCTGGCACACCGAGAATACCAGGCGGTCGATTACGACAACGCCGAACGGCACTGCATGCAGCTGTGGCGGCAGGAAAGCAACAACACGGGCGTACTGCTGCTACTGTCATCGATACACTTCCAGTGCAGACGGCTGGACAAATCAGCTCAATTCTCTACACTGGCCATCAAGCAGAACCCGCTGCTTGCCGAAGCGTACAGCAATCTGGGTAATGTTTATAAGGAGCGCGGACAGCTCCAGGAAGCCCTAGAAAACTACCGACATGCAG]

[+] EMBL BM602063             [CCGCTTCGTGATTGAAATCGCTCGGCAATTATTAGCCTCAAAAAAGAGTAAAATAGCGGCGTGAGTGTGTGTGTTTATGTGTGCGATATTTGCAATATTGTTCCTAAGTCGCCATAGTGTCAAAATCAGTGCTGAAATCGAGAGGCTAAGGTGTTGTTGATCTGGCTCCCCTGGAGTGTGATTACTGCAGCGGTCGACAGTGAGCTAACGCGGAAGCGTCGGAGAATCGAGGCAATAAAGATGCAGGGACAAATTCCCGGTGCCGCTGCGGTGCAGGTCCAGGGTGGATCACCCCAAGCCGCAGCCCTAGCAGCACAACAGCAGCAGCAGCAGCAACAACAAAGCATTTCGGTAAAGATGGACCCAGCGAATCAGCTGTCCTCTGCTGGGTTGTTGGAGCTGGCACACCGAGAATACCAGGCGGTCGATTACGACAACGCCGAACGGCACTGCATGCAGCTGTGGCGGCAGGAAAGCAACAACACGGGCGTACTGCTGCTACTGTCATCGATACACTTCCAGTGCAGACGGCTGGACAAATCAGCTCAATTCTCTACACTGGCCATCAAGCAGAACCCGCTGCTTGCCGAAGCGTACAGCAATCTGGGTAATGTTTATAAGGAGCGCGGACAGCTCCAGGAAGCCCTAGAAAACTACCGACATGCAG]




>consensus_8817#2
CCGCTTCGTGATTGAAATCGCTCGGCAATTATTAGCCTCAAAAAAGAGTAAAATAGCGGC
GTGAGTGTGTGTGTTTATGTGTGCGATATTTGCAATATTGTTCCTAAGTCGCCATAGTGT
CAAAATCAGTGCTGAAATCGAGAGGCTAAGGTGTTGTTGATCTGGCTCCCCTGGAGTGTG
ATTACTGCAGCGGTCGACAGTGAGCTAACGCGGAAGCGTCGGAGAATCGAGGCAATAAAG
ATGCAGGGACAAATTCCCGGTGCCGCTGCGGTGCAGGTCCAGGGTGGATCACCCCAAGCC
GCAGCCCTAGCAGCACAACAGCAGCAGCAGCAGCAACAACAAAGCATTTCGGTAAAGATG
GACCCAGCGAATCAGCTGTCCTCTGCTGGGTTGTTGGAGCTGGCACACCGAGAATACCAG
GCGGTCGATTACGACAACGCCGAACGGCACTGCATGCAGCTGTGGCGGCAGGAAAGCAAC
AACACGGGCGTACTGCTGCTACTGTCATCGATACACTTCCAGTGCAGACGGCTGGACAAA
TCAGCTCAATTCTCTACACTGGCCATCAAGCAGAACCCGCTGCTTGCCGAAGCGTACAGC
AATCTGGGTAATGTTTATAAGGAGCGCGGACAGCTCCAGGAAGCCCTAGAAAACTACCGA
CATGCAG

consensusID : consensus_8817#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 650
fasta sequence

                              [CCGCCCGGCGCGCCACCACCGCGCGACCATGGGCGGCAGAGAACAGAGTTGTTAAGTTTATTTTTGCAACTGCCGGCATCATGTGCTATTATTGGACTCACCAACAAAAAAAATACCAGCTTCACTAAACTTTGTCATCATTCTTTCTGTTCTTATCCCTACCCCTTCCACTTGCAGGGTTGTTGGAGCTGGCACACCGAGAATACCAGGCGGTCGATTACGACAACGCCGAACGGCACTGCATGCAGCTGTGGCGGCAGGAAAGCAACAACACGGGCGTACTGCTGCTACTGTCGTCGATACACTTCCAGTGCAGACGGCTGGACAAATCAGCTCAATTCTCTACACTGGCCATCAAGCAGAACCCGCTGCTTGCCGAAGCGTACAGCAATCTGGGTAATGTTTATAAGGAGCGCGGACAGCTCCAGGAAGCCCTAGAAAACTACCGACATGCAGTGCGTCTGAAGCCCGATTTCATTGACGGGTACATCAACTTGGCCGCTGCATTAAGTTGCCGCTCGTGACATGGAACAGGCAGTGCAAGCGTACGTCACCGCTCTGCAATACAACCCGGATCTGTACTGCGTGAGAAGTGATTTGGGAAATCTACTGAAAGCACTGGGAAGGCTTGACGAAGCGAAGCACGAGAT]

[+] EMBL BM591964             [CCGCCCGGCGCGCCACCACCGCGCGACCATGGGCGGCAGAGAACAGAGTTGTTAAGTTTATTTTTGCAACTGCCGGCATCATGTGCTATTATTGGACTCACCAACAAAAAAAATACCAGCTTCACTAAACTTTGTCATCATTCTTTCTGTTCTTATCCCTACCCCTTCCACTTGCAGGGTTGTTGGAGCTGGCACACCGAGAATACCAGGCGGTCGATTACGACAACGCCGAACGGCACTGCATGCAGCTGTGGCGGCAGGAAAGCAACAACACGGGCGTACTGCTGCTACTGTCGTCGATACACTTCCAGTGCAGACGGCTGGACAAATCAGCTCAATTCTCTACACTGGCCATCAAGCAGAACCCGCTGCTTGCCGAAGCGTACAGCAATCTGGGTAATGTTTATAAGGAGCGCGGACAGCTCCAGGAAGCCCTAGAAAACTACCGACATGCAGTGCGTCTGAAGCCCGATTTCATTGACGGGTACATCAACTTGGCCGCTGCATTAAGTTGCCGCTCGTGACATGGAACAGGCAGTGCAAGCGTACGTCACCGCTCTGCAATACAACCCGGATCTGTACTGCGTGAGAAGTGATTTGGGAAATCTACTGAAAGCACTGGGAAGGCTTGACGAAGCGAAGCACGAGAT]




>consensus_8817#3
CCGCCCGGCGCGCCACCACCGCGCGACCATGGGCGGCAGAGAACAGAGTTGTTAAGTTTA
TTTTTGCAACTGCCGGCATCATGTGCTATTATTGGACTCACCAACAAAAAAAATACCAGC
TTCACTAAACTTTGTCATCATTCTTTCTGTTCTTATCCCTACCCCTTCCACTTGCAGGGT
TGTTGGAGCTGGCACACCGAGAATACCAGGCGGTCGATTACGACAACGCCGAACGGCACT
GCATGCAGCTGTGGCGGCAGGAAAGCAACAACACGGGCGTACTGCTGCTACTGTCGTCGA
TACACTTCCAGTGCAGACGGCTGGACAAATCAGCTCAATTCTCTACACTGGCCATCAAGC
AGAACCCGCTGCTTGCCGAAGCGTACAGCAATCTGGGTAATGTTTATAAGGAGCGCGGAC
AGCTCCAGGAAGCCCTAGAAAACTACCGACATGCAGTGCGTCTGAAGCCCGATTTCATTG
ACGGGTACATCAACTTGGCCGCTGCATTAAGTTGCCGCTCGTGACATGGAACAGGCAGTG
CAAGCGTACGTCACCGCTCTGCAATACAACCCGGATCTGTACTGCGTGAGAAGTGATTTG
GGAAATCTACTGAAAGCACTGGGAAGGCTTGACGAAGCGAAGCACGAGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8817#0      AACGAGGTTGCTGTGGCAATAACGTTAGAAACCGTGCAAACAGATCGCCGTCTAGAGGAA 60
consensus_8817#3      ------------------------------------------------------------
consensus_8817#1      ----------------------------------------------------CCGGCAGC 8
consensus_8817#2      ------------------------------------------------------------
                                                                                  

consensus_8817#0      TCGATTTTCGGGTGAATTGCTAATCATTTTCAATCCTACCATCGGCCGAACCTAGACACG 120
consensus_8817#3      ------------------------------------------------------------
consensus_8817#1      AGCAGCAGCAAGCCACTGCTGACGATGTTAATTCTCAGAAAAGATGGCGATTAGTTGGTG 68
consensus_8817#2      -----------------------------------------------------------C 1
                                                                                  

consensus_8817#0      TTCTGTAGTAGTATTCACGATCTCGGACTAACTTCCGATTTTGCTAATTTAATCTAAATT 180
consensus_8817#3      ------------------------------------------------------------
consensus_8817#1      TGCTTCGTGATTGAAATCGCTCGGCAATTATTAGCCTTAAAAAAAGAGTAAAATTGCGGC 128
consensus_8817#2      CGCTTCGTGATTGAAATCGCTCGGCAATTATTAGCCTCAAAAAA-GAGTAAAATAGCGGC 60
                                                                                  

consensus_8817#0      CATATCGCGGCTTTCGCGAAGTAGCCAGACGGGCCCAAGTTAAGCTCTCTTTCATCGTGA 240
consensus_8817#3      ------------------------------------------------------------
consensus_8817#1      GTGAATGTGTGTGTTTATGTGTGTGCTATTTGCAATATTGTTCCTAAGTCGCCACAGTGT 188
consensus_8817#2      GTGAGTGTGTGTGTTTATGTGTGCGATATTTGCAATATTGTTCCTAAGTCGCCATAGTGT 120
                                                                                  

consensus_8817#0      TAAGTGCAGTGACATAAAAGCGATTCAGCGGTGCAGCGGCTTTGTTCATGTGAAAGCGTA 300
consensus_8817#3      ------------------------------------------------------------
consensus_8817#1      CAAAATCAGTGCTGAAATCGAGAGGCTAAGGTGTTGTTGATCTGGCTCCCCTGGAGTGTG 248
consensus_8817#2      CAAAATCAGTGCTGAAATCGAGAGGCTAAGGTGTTGTTGATCTGGCTCCCCTGGAGTGTG 180
                                                                                  

consensus_8817#0      GTAGAGTGTCTGTTGCAACACACCATCGCCGCGTGTCGTGGCAAGATACAATGTCCTCGG 360
consensus_8817#3      ------------------------------------------------------------
consensus_8817#1      GTGTGTGGCACGTAGTTTATATAACAAATTGATACTAACGGCAAGCAAACGTGGTTTTGT 308
consensus_8817#2      ------------------------------------------------------------
                                                                                  

consensus_8817#0      TGGAAAATGCAGAAAATGGCGTAGGAAAATACTCTTATCAGACGGTGTACTACATCATAA 420
consensus_8817#3      ------------------------------------------------------------
consensus_8817#1      ATTTCCCATCTACCTTCTACGTTCCGTTTCACTTCCCTCGGTGCCGCTGCTACACAATGT 368
consensus_8817#2      ------------------------------------------------------------
                                                                                  

consensus_8817#0      CCAACAACAACAACAACAGCACCGAAGAAGGCGAATCGGATCAGGTGGAAAATTTGCACG 480
consensus_8817#3      ------------------------------------------------------------
consensus_8817#1      GGTGATTGGCTGCGAACGGTGACTACCTTTTCATCCATCGGGCCTGCGGACACTACATAC 428
consensus_8817#2      ------------------------------------------------------------
                                                                                  

consensus_8817#0      CGATTACTGCAGCGGTCGACAGTGAGCTAACGCGGAAGGTC-GGAGAATCGAGGCAATAA 539
consensus_8817#3      -----------CCGCCCGGCGCGCCACCACCGCGCGACCAT-GGGCGGCAGAG--AACAG 46
consensus_8817#1      AGATTACTGCAGCGGTCGACAGTGAGCTAACGCGGAAGCGTCGGAGAATCGAGGCAATAA 488
consensus_8817#2      --ATTACTGCAGCGGTCGACAGTGAGCTAACGCGGAAGCGTCGGAGAATCGAGGCAATAA 238
                                  **  ** *      * * ****  *     **      ***  ** * 

consensus_8817#0      AGATGCAGGGACAAATTCCCGGCGCCGCTGCGGTGCAGGTCCAGGGTGGATCACCCCAAG 599
consensus_8817#3      AGTTGTTAAG-TTTATTTTTGCAACTGCCGGCATCATGTGCTATTATTGGACTCACCAA- 104
consensus_8817#1      AGATGCAGGGACAAATTCCCGGTGCCGCTGCGGTGCAGGTCCAGGGTGGATCACCGCAAG 548
consensus_8817#2      AGATGCAGGGACAAATTCCCGGTGCCGCTGCGGTGCAGGTCCAGGGTGGATCACCCCAAG 298
                      ** **    *    ***   *   * ** *   *   *  * *   * *  * *  *** 

consensus_8817#0      CCGCAGCCCTAGCAGCACAACAGCAGCAGCAGCAGCAACAACAAAGCATTTCGGTAAAGA 659
consensus_8817#3      --------CAAAAAAAATACCAGCTTCACTAAACTTTGTCATCATTCTTTCTGTT----- 151
consensus_8817#1      CCGCAGCCCTAGCAGCACA---GCAGCAGCAGCAGCAACAACAAAGCATTTCGGTAAAGA 605
consensus_8817#2      CCGCAGCCCTAGCAGCACAACAGCAGCAGCAGCAGCAACAACAAAGCATTTCGGTAAAGA 358
                              * *  *  * *   **  **  *         *  *  * **  * *     

consensus_8817#0      TGGACCCAGCGAATCAGCTGTCCTCTGCTGGGTTGTTGGAGCTGGCACACCGAGAATACC 719
consensus_8817#3      ----CTTATCCCTACCCCTTCCACTTGCAGGGTTGTTGGAGCTGGCACACCGAGAATACC 207
consensus_8817#1      TGGACCCAGCGAATCAGCTGTCCTCTGCTGGGTTGTTGGAGCTGGCACACCGAGAATACC 665
consensus_8817#2      TGGACCCAGCGAATCAGCTGTCCTCTGCTGGGTTGTTGGAGCTGGCACACCGAGAATACC 418
                          *  * *    *  **  *   *** *******************************

consensus_8817#0      AGGCGGTCGATTACGACAACGCCGAACGGCACTGCATGCAGCTGTGGCGGCAGGAAAGCA 779
consensus_8817#3      AGGCGGTCGATTACGACAACGCCGAACGGCACTGCATGCAGCTGTGGCGGCAGGAAAGCA 267
consensus_8817#1      AGGCGGTCGATTACGACAACGCCGAACGGCACTGCATGCAGCTGTGGCGGCAGGAAAGCA 725
consensus_8817#2      AGGCGGTCGATTACGACAACGCCGAACGGCACTGCATGCAGCTGTGGCGGCAGGAAAGCA 478
                      ************************************************************

consensus_8817#0      ACAACACGGGCGTACTGCTGCTACTGTCGTCGATACACTTCCAGTGCAGACGGCTGGACA 839
consensus_8817#3      ACAACACGGGCGTACTGCTGCTACTGTCGTCGATACACTTCCAGTGCAGACGGCTGGACA 327
consensus_8817#1      ACAACACGGGCGTACTGCTGCTACTGTCGTCGATACACTTCCAGTGCAGACGGCTGGACA 785
consensus_8817#2      ACAACACGGGCGTACTGCTGCTACTGTCATCGATACACTTCCAGTGCAGACGGCTGGACA 538
                      **************************** *******************************

consensus_8817#0      AATCAGCTCAATTCTCTACACTGGCCATCAAGCAGAACCCGCTGCTTGCCGAAGCGTACA 899
consensus_8817#3      AATCAGCTCAATTCTCTACACTGGCCATCAAGCAGAACCCGCTGCTTGCCGAAGCGTACA 387
consensus_8817#1      AATCAGCCCAATTCTCTACACTGGCCATCAAGCAGAACCCGCTGCTTGCCGAAGCGTACA 845
consensus_8817#2      AATCAGCTCAATTCTCTACACTGGCCATCAAGCAGAACCCGCTGCTTGCCGAAGCGTACA 598
                      ******* ****************************************************

consensus_8817#0      GCAATCTGGGTAATGTTTATAAGGAGCGCGGACAGCTCCAGGAAGCCCTAGAAAACTACC 959
consensus_8817#3      GCAATCTGGGTAATGTTTATAAGGAGCGCGGACAGCTCCAGGAAGCCCTAGAAAACTACC 447
consensus_8817#1      GCAATCTGGGTAATGTTTATAAGGAGCGCGGACAGCTCCAGGAAGCCCTAGAAAACTACC 905
consensus_8817#2      GCAATCTGGGTAATGTTTATAAGGAGCGCGGACAGCTCCAGGAAGCCCTAGAAAACTACC 658
                      ************************************************************

consensus_8817#0      GACATGCAGTGCGTCTGAAGCCCGATTTCATTGACGGGTACATCAACTTGGCCGCTGCAT 1019
consensus_8817#3      GACATGCAGTGCGTCTGAAGCCCGATTTCATTGACGGGTACATCAACTTGGCCGCTGCAT 507
consensus_8817#1      GACATGCAGTGCGTCTGAAGCCCGATTTCATTGACGGGTACATCAACTTGGCCGCTGCAT 965
consensus_8817#2      GACATGCAG--------------------------------------------------- 667
                      *********                                                   

consensus_8817#0      TA-GTTGCCGCTCGTG-ACATGGAACAGGCAGTGCAAGCGTACGTCACCGCTCTGCAATA 1077
consensus_8817#3      TAAGTTGCCGCTCGTG-ACATGGAACAGGCAGTGCAAGCGTACGTCACCGCTCTGCAATA 566
consensus_8817#1      TA-GTTGCCGCTCGTGTACATGGAACAGGCAGTGCAAGCGTACGTCACCGCTCTGCAATA 1024
consensus_8817#2      ------------------------------------------------------------
                                                                                  

consensus_8817#0      CAACCCGGATCTGTACTGCGTGAGAAGTGATTTGGGAAATCTACTGAAAGCACTGGGAAG 1137
consensus_8817#3      CAACCCGGATCTGTACTGCGTGAGAAGTGATTTGGGAAATCTACTGAAAGCACTGGGAAG 626
consensus_8817#1      CAACCCGGATC------------------------------------------------- 1035
consensus_8817#2      ------------------------------------------------------------
                                                                                  

consensus_8817#0      ACTTGACGAAGCGAAGCACGAGATGCCACACACGCATAACTTTAGTTTATTATATTGCAT 1197
consensus_8817#3      GCTTGACGAAGCGAAGCACGAGAT------------------------------------ 650
consensus_8817#1      ------------------------------------------------------------
consensus_8817#2      ------------------------------------------------------------
                                                                                  

consensus_8817#0      GACGTGAGCGTTTCCATCAGGCAGATGATGATGATGGATTGACAAAACCACTGTCGACGG 1257
consensus_8817#3      ------------------------------------------------------------
consensus_8817#1      ------------------------------------------------------------
consensus_8817#2      ------------------------------------------------------------
                                                                                  

consensus_8817#0      CGAACGAACAAGTCTCGACAGGAGGGCGAAGGAATGCGATTGATTGAAACGCTCGCTTGG 1317
consensus_8817#3      ------------------------------------------------------------
consensus_8817#1      ------------------------------------------------------------
consensus_8817#2      ------------------------------------------------------------
                                                                                  

consensus_8817#0      GTTATTTTCTATTATATCGTATCACTAAATCGTGGATCCAGCCGATCGCAGTTATTGATC 1377
consensus_8817#3      ------------------------------------------------------------
consensus_8817#1      ------------------------------------------------------------
consensus_8817#2      ------------------------------------------------------------
                                                                                  

consensus_8817#0      GTCCAGAAATGGTTCGGCAGCAAATGAAAAAAAAAGATAACTGTGCGTGTGTAGTAGCTG 1437
consensus_8817#3      ------------------------------------------------------------
consensus_8817#1      ------------------------------------------------------------
consensus_8817#2      ------------------------------------------------------------
                                                                                  

consensus_8817#0      TG 1439
consensus_8817#3      --
consensus_8817#1      --
consensus_8817#2      --