These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8823#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 846 fasta sequence [CCGCGGACGCGTGGGCACCCATTTCCCTTAGTACATTATAGCCCATGACCCTTAACTGGAGCAATTGGAGCAATAACTACTGTTTCAGGATTAGTACAATGATTTCATCAATATACTATAACATTATTTATATTAGGTAATGTTATTACTATTTTAACTATGTATCAATGATGACGAGATATTTCTCGAGAAGGAACTTTTCAAGGACTTCATACTTTTCCAGTAACTATTGGATTACGATGAGGAATAATTTTATTTATTGTATCTGAAGTA-TTTTTTTTTATTTCTTTTTTCTGAGCATTTTTCCATAGTAGTTTATCTCCTACAATTGAATTAGGAATAACATGACCTCCAGTAGGAATTGCCGCATTTAATCCCTTCCAAATTCCTCTTTTA-AATACTGCTATTTTATTAGCTTCTGGAGTAACTGTCACTTGAGCTCATCATGCTCTAATAGAAGGTAATCATTCACAAGCCACACAAGGATTATTTTTTACAATTGTATTAGGAGTATATTTTACTATTTTACAAGCTTATGAATATATTGAAGCTCCTTTTACTATTGCAGATGCTGTTTATGGATCAACTTTTTATATAGCAACAGGATTCCACGGATTACATGTACTAATTGGAACAACTTTTTTATTAATTTGCTTTTTACGTCATATTAATTATCATTTTTCTAAAAATCATCATTTTGGTTTTGAAGCTGCAGCTTGATACTGACACTTTGTAGATGTTGTATGATTATTTTGGGATCCTACAATTTATTGATGAGGTAGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGCCCAATGTGCCGGG] [+] EMBL BM592234 [CCGCGGACGCGTGGGCACCCATTTCCCTTAGTACATTATAGCCCATGACCCTTAACTGGAGCAATTGGAGCAATAACTACTGTTTCAGGATTAGTACAATGATTTCCTCAATATACT ] [+] EMBL BX607242 [ TCACTTAGTAGATTATAGCCCATGACCCTTAACTGGAGCAATTGGAGCAATAACTACTGTTTCAGGATTAGTACAATGATTTCATCAATACACTATAACATTATTTATTTTAGGTAATGTTATTACTATTTTAACTATGTATCAATGATGACGAGATATTTCTCGAGAAGGAACTTTTCAAGGACTT ] [+] EMBL BX605001 [ TTAACTGGAGCAATTGGAGCAATAACTACTGTTTCAGGATTAGTACAATGATTTCATCAATATACTATAACATTATTTATATTAGGTAATGTTATTACTATTTTAACTATGTATCAATGATGACGAGATATTTCTCGAGAAGGAACTTTTCAAGGACTTCATACTTTTCCAGTAACTATTGGATTACGATGAGGAATAATTTTATTTATTGTATCTGAAGTATTTTTTTTTTATTTCTTTTTTCTGAGCATTTTTCCATAGTAGTTTATCTCCTACAATTGAATTAGGAATAACATGACCTCCAGTAGGAATTGCCGCATTTAATCCCTTCCAAATTCCTCTTTTA AATACTGCTATTTTATTAGCTTCTGGAGTAACTGTCACTTGAGCTCATCATGCTCTAATAGAAGGTAATCATTCACAAGCCACACAAGGATTATTTTTTACAATTGTATTAGGAGTATATTTTACTATTTTACAAGCTTATGAATATATTGAAGCTCCTTTTACTATTGCAGATGCTGTTTATGGATCAACTTTTTATATAGCAACAGGATTCCACGGATTACATGTACTAATTGGAACAACTTTTTTATTAATTTGCTTTTTACGTCATATTAATTA ] [+] EMBL AGA282097 [ GAGCAATAACTACTGTTTCACGATTAGTACAATGATTTCATCAATATACTATAACATTATTTATATTAGGTAATGTTATTACTATTTTAACTATGTATCAATGATGACGAGATATTTCTCGAGAAGGAACTTTTCAAGGACTTCATACTTTTCCAGTAACTATTGGATTACGATGAGGAATAATTTTATTTATTGTATCTGAAGTA TTTTTTTTTATTTCTTTTTTCTGAGCATTTTTCCATAGTAGTTTATCTCCTACAATTGAATTAGGAATAACATGACCTCCAGTAGGAATTGCCGCATTTAATCCCTTCCAAATTCCTCTTTTA AATACTGCTATTTTATTAGCTTCTGGAGTAACTGTCACTTGAGCTCATCATGCTCTAATAGAAGGTAATCATTCACAAGCCACACAAGGATTATT ] [+] EMBL BX613627 [ CTGTTTCAGGATTAGTACAATGATTTCATCAATATACTATAACATTATTTATATTAGGTAATGTTATTACTATTTTAACTATGTATCAATGATGACGAGATATTTCTCGAGAAGGAACTTTTCAAGGACTTCATACTTTTCCAGTAACTATTGGATTACGATGAGGAATAATTTTATTTATTGTATCTGAAGTA TTTTTTTTTATTTCTTTTTTCTGAGCATTTTTCCATAGTAGTTTATCTCCTACAATTGAATTAGGAATAACATGACCTCCAGTAGGAATTGCCGCATTTAATCCCTTCCAAATTCCTCTTTTA AATACTGCTATTTTATTAGCTTCTGGAGTAACTGTCACTTGAGCTCATCATGCTCTAATAGAAGGTAATCATTCACAAGCCACACAAGGATTATTTTTTACAATTGTATTAGGAGTATATTTTACTATTTTACAAGCTTATGAATATATTGAAGCTCCTTTTACTATTGCAGATGCTGTTTATGGATCAACTTTTTATATAGCAACAGGATTCCACGGATTACATGTACTAATTGGAACAACTTTTTTATTAATTTGCTTTTTACGTCATATTAATTAT ] [+] EMBL BM628098 [ GACGAGATATTTCTCGAGAAGGAACTTTTCGAGGACTTCATACTTGTCCGGCAACTATTGGATTACGATGAGGAATAATTTTATTTATTGTATCTGAAGTA TTTTTTTTTATTTCTTTTTTCTGAGCATTTTTCCATAGTACTTTATCTCCTACAATTGAA TAGGAATAACATGACCTCCTGTAGGAATTGCAGCATTGAATCCCTTCCAAATTCCTCTTTTAGAATACTGCTATTTTATTAGCTTCTGGAGTAACTGTCACTTGA ] [-] EMBL AGA280396 [ TTTTA AATACTGCTATTTTATTAGCTTCTGGAGTAACTATCACTTGAGCTCATCATGCTCTAATAGAAGGTAATCATTCACAAGCCACACAAGGATTATTTTTTACAATTGTATTAGGAGTATATTTTACTATTTTACAAGCTTATGAATATATTGAAGCTCCTTTTACTATTGCAGATGCTGTTTATGGATCAACTTTTTATATAGCAACAGGATTCCACGGATTACATGTACTAATTGGAACAACTTTTTTATTAATTTGCTTTTTACGTCATATTAATTATCATTTTTCTAAAAATCATCATTTTGGTTTTGAAGCTGCAGCTTGATACTGACACTTTGTAGATGTTGTATGATTATTTTGGGATCCTACAATTTATTGATGAGGTAGCTAAAAAAAA ] [+] EMBL CNS08XPH [ CTAATTGGAACAACTTTTTTATTAATTTGCTTTTTACGTCATATTAATTATCATTTTTCTAAAAATCATCATTTTGGTTTTGAAGCTGCAGCTTGATACTGACACTTTGTAGATGTTGTATGATTATTTTTATATATTACAATTTATTGATGAGGTAGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGCCCAATGTGCCGGG] consensusID : consensus_8823#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 449 fasta sequence [ACTGTTTCAGGATTAGTACAATGATTTCATCAATATACTATAACATTATTTATTTTAGGTAATGTTATTACTATTTTAACTATGTATCAATGATGACGAGATATTTCTCGAGAAGGAACTTTTCAAGGACTTCATACTTTTCCAGTAACTATTGGATTACGATGAGGAATAATTTTATTTATTGTATTTTAAGTATTTTTTTTTATTTCTTTTTTCTGAGCATTTTTTCCCCCCCCCCCCCTGGGAGGGGGAATTAGGAATAACATGACCTCCTGTAGGAATTGCCGCATTTAATCCCTTCCAAATTCCTCTTTTAAATACTGCTATTTTATTAGCTTCTGGAGTAACTGTCACTTGAGCTCATCATGCTCTAATAGAAGGTAATCATTCACAAGCCACACAAGGATTATTTTTTACAATTGTATTAGGAGTATATTTTACTATTTTAC] [+] EMBL BM624564 [ACTGTTTCAGGATTAGTACAATGATTTCATCAATATACTATAACATTATTTATTTTAGGTAATGTTATTACTATTTTAACTATGTATCAATGATGACGAGATATTTCTCGAGAAGGAACTTTTCAAGGACTTCATACTTTTCCAGTAACTATTGGATTACGATGAGGAATAATTTTATTTATTGTATTTTAAGTATTTTTTTTTATTTCTTTTTTCTGAGCATTTTTTCCCCCCCCCCCCCTGGGAGGGGGAATTAGGAATAACATGACCTCCTGTAGGAATTGCCGCATTTAATCCCTTCCAAATTCCTCTTTTAAATACTGCTATTTTATTAGCTTCTGGAGTAACTGTCACTTGAGCTCATCATGCTCTAATAGAAGGTAATCATTCACAAGCCACACAAGGATTATTTTTTACAATTGTATTAGGAGTATATTTTACTATTTTAC] consensusID : consensus_8823#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 378 fasta sequence [CCCCGAGCACTGTTGGCCTACTGGACACAAGGATTATTTTTTACAATTTTATTAGGGGTATATTTTACTATTTTACAAGCTTATGAATATATTGAAGCCCCTTTTACTATTGCAGATGCTGTTTATGGATCAACTTTTTATATAGCAACAGGATTCCCCGGATTACATGTACTAATTGGAACAACTTTTTTATTAATTTGCTTTTTACGTCATATTAATTATCATTTTTCTAAAAATCATCATTTTGGTTTTGAAGCTGCAGCTTGATACTGACACTTTGTAGATGTTGTATGATTATTTTTATATATTACAATTTATTGATGAGGTAGATAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGGGCGG] [-] EMBL CNS08YPD [CCCCGAGCACTGTTGGCCTACTGGACACAAGGATTATTTTTTACAATTTTATTAGGGGTATATTTTACTATTTTACAAGCTTATGAATATATTGAAGCCCCTTTTACTATTGCAGATGCTGTTTATGGATCAACTTTTTATATAGCAACAGGATTCCCCGGATTACATGTACTAATTGGAACAACTTTTTTATTAATTTGCTTTTTACGTCATATTAATTATCATTTTTCTAAAAATCATC ] [+] EMBL CNS08YPC [ CTAATTGGAACAACTTTTTTATTAATTTGCTTTTTACGTCATATTAATTATCATTTTTCTAAAAATCATCATTTTGGTTTTGAAGCTGCAGCTTGATACTGACACTTTGTAGATGTTGTATGATTATTTTTATATATTACAATTTATTGATGAGGTAGATAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGGGCGG] consensusID : consensus_8823#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 91 fasta sequence [CCGGTTTTGAAGCTGCAGCTTGATACAACATCTACAAAGTGTCAGTATCAAGCTGCAGCTTGATACTGACACTTTGTAGATGTTGTATGAT] [+] EMBL BM647984 [CCGGTTTTGAAGCTGCAGCTTGATACAACATCTACAAAGTGTCAGTATCAAGCTGCAGCTTGATACTGACACTTTGTAGATGTTGTATGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8823#2 ------------------------------------------------------------ consensus_8823#3 ------------------------------------------------------------ consensus_8823#0 CCGCGGACGCGTGGGCACCCATTTCCCTTAGTACATTATAGCCCATGACCCTTAACTGGA 60 consensus_8823#1 ------------------------------------------------------------ consensus_8823#2 -------------------------------------------------------CCCCG 5 consensus_8823#3 ------------------------------------------------------------ consensus_8823#0 GCAATTGGAGCAATAACTACTGTTTCAGGATTAGTACAATGATTTCATCAATATACTATA 120 consensus_8823#1 ------------------ACTGTTTCAGGATTAGTACAATGATTTCATCAATATACTATA 42 consensus_8823#2 AGCACTGTTGGCCTACTGGACACAAGGATTATTTT--TTACAATTTTATTAGGGGTATAT 63 consensus_8823#3 ------------------------------------------------------------ consensus_8823#0 ACATTATTTATATTAGGTAATGTTATTACTATTTTAACTATGTATCAATGATGACGAGAT 180 consensus_8823#1 ACATTATTTATTTTAGGTAATGTTATTACTATTTTAACTATGTATCAATGATGACGAGAT 102 consensus_8823#2 TTTACTATTTTACAAGCTTATGAATATATTGAAGCCCCTTTTACTATTGCAGATGCTGTT 123 consensus_8823#3 ------------------------------------------------------------ consensus_8823#0 ATTTCTCGAGAAGGAACTTTTCAAGGACTTCATACTTTTCCAGTAACTATTGGATTACGA 240 consensus_8823#1 ATTTCTCGAGAAGGAACTTTTCAAGGACTTCATACTTTTCCAGTAACTATTGGATTACGA 162 consensus_8823#2 TATGGATCAACTTTTTATATAGCAACAGGATTCCCCGGATTACATGTACTAATTGGAACA 183 consensus_8823#3 ------------------------------------------------------------ consensus_8823#0 TGAGGAATAATTTTATTTATTGTATCTGAAGTATTTTTTTTTATTTCTTTTTTCTGAGCA 300 consensus_8823#1 TGAGGAATAATTTTATTTATTGTATTTTAAGTATTTTTTTTTATTTCTTTTTTCTGAGCA 222 consensus_8823#2 ACTTTTTTATTAATTTGCTTTTTACGTCA-----TATTAATTATCATTTTTC---TAAAA 235 consensus_8823#3 --------------CCGGTTTTGAAGCTG-----CAGCT-TGATACAACATC---TACAA 37 consensus_8823#0 TTTTTCCATAGTAGTTTATCTCCTACAATTGAATTAGGAATAACATGACCTCCAGTAGGA 360 consensus_8823#1 TTTTTTCCCCCC--CCCCCCCTGGGAGGGGGAATTAGGAATAACATGACCTCCTGTAGGA 280 * * * ** ** * consensus_8823#2 ATCATCA----TTTTGGTTTTGAAGCTGCAGCTT--GATACTGACACTTTGT-AGATGTT 288 consensus_8823#3 AGTGTCA----GTATC------AAGCTGCAGCTT--GATACTGACACTTTGT-AGATGTT 84 consensus_8823#0 ATTGCCGCATTTAATCCCTTCCAAATTCCTCTTTTAAATACTGCTATTTTATTAGCTTCT 420 consensus_8823#1 ATTGCCGCATTTAATCCCTTCCAAATTCCTCTTTTAAATACTGCTATTTTATTAGCTTCT 340 * * * ** * * ** ****** * *** * ** * * consensus_8823#2 GTA-TGATTATTTTTATATATTACAATTTATTGATGAGGTAGATAAAAAAAAAAAAAAAA 347 consensus_8823#3 GTA-TGAT---------------------------------------------------- 91 consensus_8823#0 GGAGTAACTGTCACTTGAGCTCATCATGCTCTAATAGAAGGTAATCATTCACAAGCCACA 480 consensus_8823#1 GGAGTAACTGTCACTTGAGCTCATCATGCTCTAATAGAAGGTAATCATTCACAAGCCACA 400 * * * * consensus_8823#2 AAAAAAAAAAAGGCCACATGTGCCCGGGCGG----------------------------- 378 consensus_8823#3 ------------------------------------------------------------ consensus_8823#0 CAAGGATTATTTTTTACAATTGTATTAGGAGTATATTTTACTATTTTACAAGCTTATGAA 540 consensus_8823#1 CAAGGATTATTTTTTACAATTGTATTAGGAGTATATTTTACTATTTTAC----------- 449 consensus_8823#2 ------------------------------------------------------------ consensus_8823#3 ------------------------------------------------------------ consensus_8823#0 TATATTGAAGCTCCTTTTACTATTGCAGATGCTGTTTATGGATCAACTTTTTATATAGCA 600 consensus_8823#1 ------------------------------------------------------------ consensus_8823#2 ------------------------------------------------------------ consensus_8823#3 ------------------------------------------------------------ consensus_8823#0 ACAGGATTCCACGGATTACATGTACTAATTGGAACAACTTTTTTATTAATTTGCTTTTTA 660 consensus_8823#1 ------------------------------------------------------------ consensus_8823#2 ------------------------------------------------------------ consensus_8823#3 ------------------------------------------------------------ consensus_8823#0 CGTCATATTAATTATCATTTTTCTAAAAATCATCATTTTGGTTTTGAAGCTGCAGCTTGA 720 consensus_8823#1 ------------------------------------------------------------ consensus_8823#2 ------------------------------------------------------------ consensus_8823#3 ------------------------------------------------------------ consensus_8823#0 TACTGACACTTTGTAGATGTTGTATGATTATTTTGGGATCCTACAATTTATTGATGAGGT 780 consensus_8823#1 ------------------------------------------------------------ consensus_8823#2 ------------------------------------------------------------ consensus_8823#3 ------------------------------------------------------------ consensus_8823#0 AGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGCCCAATGT 840 consensus_8823#1 ------------------------------------------------------------ consensus_8823#2 ------ consensus_8823#3 ------ consensus_8823#0 GCCGGG 846 consensus_8823#1 ------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||