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Anopheles gambiae
cluster # 8829 cluster # 8829       Sequences # 12       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8829#0 length = 1117 sequences # 6  
consensus_8829#1 length = 1093 sequences # 2  
consensus_8829#2 length = 788 sequences # 3  
consensus_8829#3 length = 224 sequences # 1  

consensusID : consensus_8829#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1117
fasta sequence
                              [CCGCGGACGCGTGGGTGCTGGAGTTGCATCAATGAACATCACGCAGGGAGTGCCTCGTATTGTCGAGATTATTAACGCTACTAAAGCCATTTCTACACCAATAATAACAGCGGAGATCGAAAACAACACCAACATGGAGTTCGCTCGCAAAGTAAAGGCTCGTATTGAAAAAACGACACTGGGAGAAATTTCGTCTTATATAGAGGAGGTGTATAAAATGAATGAGTGTTTTCTTCTCATTAAGCTCGACCTTGGTCGCATTAGAGTGCTGGGCTTGGAAGTTAATGCTGACACCATACGCTACTCAATTTGCACATCAAAACTAAAGCTGAAGCAAGAGAATGTGGAAGTATATGGACCATCACTCATTATCATTCGGCCTGACAGCAGCAAGCACAGCCACAGCTTGAATGC--GGAA--CTGCAACGGCTCATCACAGCAATACCAAACGTAGTGGTTGCCGG--ATTACCGCAA--GTATCTCGCGCAGTTATAGCCGTCGATGATTCCCGCGGCACGCCCAAGTATCGATTATGCGTGGAAGGATGTGGGTTACGTGATGTAATGGGCACATACGGAGTGATCGGAAACAGAACTAAGAGTAACAACATTTTGGAGGTGTACCAAACGCTAGGTA-TTGAAGCAGCGCGGACTACCATTATGACTGAAATTACTGAAGTAATGGAGGGGCATGGTATGAGCGTAGATCATCGACA-CATCATGCTACTCTCTGGCCAGATGACATCGAGGGGTGAAGTGCTTGGAATCACCCGTCACGGTCTTGCGAAAATGCGCGAGTCCGTGTTTAACCTTGCATCGTTTGAAAAAACAG-CGGATCATTTGTTTGATGCTGCGTACTATGGCCAAACGGATTCAGTGGATGGCGTTTCGGAGCGTATCATATTGGGAATGCCTGCATCAATTGGTACCGGATTATTCAAACTAATTCATAATCACAGCAACACACAACTTGAGTCGATTAGTTGTCCTATTTTTAATGTGGTGTAACCTTAACCATAACTCCTGATAAGAGTATCATTTGTGGTGCCGTGCCATCTAACACAGATAGCATCCCGGAGCGTACGCACGGATAATAAAGAGATCACTTGATCAACCTAACTG]

[+] EMBL BM596518             [CCGCGGACGCGTGGGTGCTGGAGTTGCATCAATGAACATCACGCAGGGAGTGCCTCGTATTGTCGAGATTATTAACGCTACTAAAGCCATTTCTACACCAATAATAACAGCGGAGATCGAAAACAACACCAACATGGAGTTCGCTCGCAAAGTAAAGGCTCGTATTGAAAAAACGACACTGGGAGAAATTTCGTCTTATATAGAGGAGGTGTATAAAATGAATGAGTGTTTTCTTCTCATTAAGCTCGACCTTGGTCGCATTAGAGTGCTGGGCTTGGAAGTTAATGCTGACACCATACGCTACTCAATTTGCACATCAAAACTAAAGCTGAAGCAAGAGAATGTGGAAGTATATGGACCATCACTCATTATCATTCGGCCTGACAGCAGCAAGCACAGCCACAGCTTGAATGC  GGAA  CTGCAACGGCTCATCACAGCAATACCAAACGTAGTGGTTGCCGG  ATTACCGCAA  GTATCTCGCGCAGTTATAGCCGTCGATGATTCCCGCGGCACGCCGAAGTATCGATTATGCGTGGAAGGATGTGGGTTACGTGATGTAATGGGCACATACGGAGTGATCGGAAACAGAACTAAGAGTAACCACATTTTGGAGGTGTACCAAACGCTAGGTATTTGAAGCAGCGCGGACTACCATTATGACTGAAATTACTGAAGTAATGGAGGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BX623816             [                                                                                                                                                                                                                                                                         GTGCTGGGCTTGGAAGTTAATGCTGACACCATACGCTACTCAATTTGCACATCAAAACTAAAGCTGAAGCAAGAGAATGTGGAAGTATATGGACCATCACTCATTATCATTCGGCCTGACAGCAGCAAGCACAGCCACAGCTTGAATGC  GGAA  CTGCAACGGCTCATCACGGCAATACCAAACGTNGTGGTTGCCGG  ATTACCGCAA  GTATCTCGCGCAGTTATAGCCGTCGATGATTCCCGCGGCACGCCCAAGTATCGATTATGCGTGGAAGGATGTGGGTTACGTGATGTAATGGGCACATACGGAGTGATCGGAAACAGAACTAAGAGTAACAACATTTTGGAGGTGTACCAAACGCTAGGTA TTGAAGCAGCGCGGACTACCATTATGACTGAAATTACTGAAGTAATGGAGGGGCATGGTATGAGCGTAGATCATCGACA CATCATGCTACTCTCTGGCCAGATGACATCGAGGGGTGAAGTGCTTGGAATCACCCGTCACGGTCTTGCGAAAATGCGCGAGTCCGTGTTTAACCTTGCATCGTTTGAAAAAACAG CGGATCATTTGTTTGATGCTGCGTACTATGGCCAAACGGATTCAGTGGATGGCGTTTCGGAGCGTATCATATTGGGAATGCCTGCATCAATTGGTACCGGATTATTCAAACTAATTCATAATCACAGCAACACACNACTTGAGTCGATTAGTTGTCCTAT                                                                                                                                  ]
[+] EMBL AL930012             [                                                                                                                                                                                                                                                                                                                                             gccccgaggTGT GAAGTATATGGACCATCACTCATTATCATTCGGCCTGACAGCAGC AGCACAGCCACAGCTTGAATGCCGGGAAACCTG AACGGCTCATCACGGCAATACCAAACGTAGTGGTTGCCGGGAATTACCGCAAAGGTATCTCGCGCAGTTATAGCCGTCGATGATTCCCGCGGCACGCCCAAGTATCGATTATGCGTGGAAGGATGTGGGTTACGTGATGTAATGGGCACATACGGAGTGATCGGAAACAGAACTAAGAGTAACAACATTTTGGAGGTGTACCAAACGCTAGGTA TTGAAGCAGCGCGGACTACCATTATGACTGAAATTACTGAAGTAATGGAGGGGCATGGTATGAGCGTAGATCATCGACACCATCATGCTACTCTCTGGCCAGATGACATCGAGGGGTGAAGTGCTTGGAATCACCCGTCACGGTCTTGCGAAAATGCGCGAGTCCGTGTTTAACCTTGCATCGTTTGAAAAAACAGCCGGATCATTTGTTTGAT                                                                                                                                                                                                                                                                                 ]
[+] EMBL BX622646             [                                                                                                                                                                                                                                                                                                                                                                TATGGACCATCACTCATTATCATTCGGCCTGACAGCAGCAAGCACAGCCACAGCTTGAATGC  GGAA  CTGCAACGGCTCATCACAGCAATACCAAACGTAGTGGTTGCCGG  ATTACCGCAA  GTATCTCGCGCAGTTATAGCCGTCGATGATTCCCGCGGCACGCCCAAGTATCGATTATGCGTGGAAGGATGTGGGTTACGTGATGTAATGGGCACATACGGAGTGATCGGAAACAGAACTAAGAGTAACAACATTTTGGAGGTGTACCAAACGCTAGGTA TTGAAGCAGCGCGGACTACCATTATGACTGAAATTACTGAAGTAATGGAGGGGCATGGTATGAGCGTAGATCATCGACA CATCATGCTACTCTCTGGCCAGATGACATCGAGGGGTGAAGTGCTTGGAATCACCCGTCACGGTCTTGCGAAAATGCGCGAGTCCGTGTTTAACCTTGCATCGTTTGAAAAAACAG CGGATCATTTGTTTGATGCTGCGTACTATGGCCAAACGGATTCAGTGGATGGCGTTTCGGAGCGTATCATATTGGGAATGCCTGCATCAATTGGTACCGGATTATTCAAACTAATTCATAATCACAGCAACACACAACTTGAGTCGATTAGTTGTCCTATTTTTAATGTGGTGTAACCTTAACCATAACTCCTGATAAGAGTATCATTTGTGGTGCCGTGCCATCTAACACAGATAGCATCCCGGAGCGTACGCACGGATAATAAAGAGATCACTTGATC          ]
[-] EMBL AGA282508            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TCGGAAACAGAACTAAGAGTAACAACATTTTGGAGGTGTACCAAACGCTAGGTA TTGAAGCAGCGCGGACTACCATTATGACTGAAATTACTGAAGTAATGGAGGGGCATGGTATGAGCGTAGATCATCGACA CATCATGCTACTCTCTGGCCAGATGACATCGAGGGGTGAAGTGCTTGGAATCACCCGTCACGGTCTTGCGAAAATGCGCGAGTCCGTGTTTAACCTTGCATCGTTTGAAAAAACAG CGGATCATTTGTTTGATGCTGCGTACTATGGCCAAACGGATTCAGTGGATGGCGTTTCGGAGCGTATCATATTGGGAATGCCTGCATCAATTGGTACCGGATTATTCAAACTAATTCATAATCACAGCAACACACAACTTGAGTCGATTAGTTGTCCTATTTTTAATGTGGTGTAACCTTAACCATAACTCCTGATAAGAGTATCATTTGTGG                                                                             ]
[+] EMBL BM576723             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ccgCGTTTGAAAAAACAG CGGATCATTTGTTTGATGCTGCGTACTATGGCCAAACGGATTCAGTGGATGGCGTTTCGGAGCGTATCATATTGGGAATGCCTGCATCAATTGGGACCGGATTATTCAAACTAATTCATAATCACAGCAACACACAACTTGAGTCGATTAGTTGTCCTATTTTTAATGTGTTGTAACCTTAACCATAACTCCTGATAAGAGTATCATTTGTGGTGCCGTGCCATCTAACACAGATAGCATCCCGGAGCGTACGCACGGATAATAAAGAGATCACTTGATCAACCTAACTG]


>consensus_8829#0 CCGCGGACGCGTGGGTGCTGGAGTTGCATCAATGAACATCACGCAGGGAGTGCCTCGTAT TGTCGAGATTATTAACGCTACTAAAGCCATTTCTACACCAATAATAACAGCGGAGATCGA AAACAACACCAACATGGAGTTCGCTCGCAAAGTAAAGGCTCGTATTGAAAAAACGACACT GGGAGAAATTTCGTCTTATATAGAGGAGGTGTATAAAATGAATGAGTGTTTTCTTCTCAT TAAGCTCGACCTTGGTCGCATTAGAGTGCTGGGCTTGGAAGTTAATGCTGACACCATACG CTACTCAATTTGCACATCAAAACTAAAGCTGAAGCAAGAGAATGTGGAAGTATATGGACC ATCACTCATTATCATTCGGCCTGACAGCAGCAAGCACAGCCACAGCTTGAATGCGGAACT GCAACGGCTCATCACAGCAATACCAAACGTAGTGGTTGCCGGATTACCGCAAGTATCTCG CGCAGTTATAGCCGTCGATGATTCCCGCGGCACGCCCAAGTATCGATTATGCGTGGAAGG ATGTGGGTTACGTGATGTAATGGGCACATACGGAGTGATCGGAAACAGAACTAAGAGTAA CAACATTTTGGAGGTGTACCAAACGCTAGGTATTGAAGCAGCGCGGACTACCATTATGAC TGAAATTACTGAAGTAATGGAGGGGCATGGTATGAGCGTAGATCATCGACACATCATGCT ACTCTCTGGCCAGATGACATCGAGGGGTGAAGTGCTTGGAATCACCCGTCACGGTCTTGC GAAAATGCGCGAGTCCGTGTTTAACCTTGCATCGTTTGAAAAAACAGCGGATCATTTGTT TGATGCTGCGTACTATGGCCAAACGGATTCAGTGGATGGCGTTTCGGAGCGTATCATATT GGGAATGCCTGCATCAATTGGTACCGGATTATTCAAACTAATTCATAATCACAGCAACAC ACAACTTGAGTCGATTAGTTGTCCTATTTTTAATGTGGTGTAACCTTAACCATAACTCCT GATAAGAGTATCATTTGTGGTGCCGTGCCATCTAACACAGATAGCATCCCGGAGCGTACG CACGGATAATAAAGAGATCACTTGATCAACCTAACTG



consensusID : consensus_8829#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1093
fasta sequence
                              [CCGATTTTGGCGAAGAATATGCCATTAAATCGATGTGGCGCTTAGCACGGATGGCATCGTACTTTATGATGAACCATGGGTTTTCATTTGGTATCGGCGACGTAACACCGAGTCGGAAGCTGCTTGAGGAAAAACAAAAGCTTTTAGAAAATGGATATCGAAAATGTGATGAATATATTGCAGAAATGAAGAAGGGAACGTTGCAGTGTCAGCCGGGTTGCACGGCAGAGCAAACTCTCGAAGCGGTTATGCTAAAGGAACTGTCTAGTATCCGCGAGCTTGCAGCAAAGGCTTGCTTCAGAGAGCTACATCCGACAAACAGTGCACTCATCATGGCGCAATCGGGCTCGAAGGGATCGAACATAAATATCTCTCAAATGATTGCCTGTGTTGGACAACAAGCCATCAACGGCAAAAGAGTACCGAACGGATTCGAGGACCGAGCGTTGCCTCATTTTGAAAAGTTTTCCAAAATTCCTGCTGCTCGTGGTTTCGTACAGAACAGCTTTTATTCCGGTTTAACACCAACGGAATTCTTTTTTCATACCATGGCTGGCCGAGAGGGTCTGGTTGATACTGCAGTGAAAACAGCCGAAACGGGTTACTTTGCAGCGACGTTTGGTAAAGTGCCTTGAAGATTTAGTAGTACAATATGACGGAACAGTACGGAACGCTATTGGGGGAGGTAGTCGAATTTTCATACGGTGCTGATGGCTTGGATCCGGTTTACATGGAAGTGAAGAACAAACCGGTGGATATTGAAAGACAGTTTATGCATGTGCGAAACATGCTTCCATGCCGCGATGAGATTCCTTTACGAGGGGAGGAAGTGCTAAGCGAAGGAGAACGCATTCTATCCACACCACAATTTTCTAACTGCCGTCAAGATTTTCGTAAGGAATGTTTGTAAGTATTTACCTTATGACTATGGTTGAGCTACTATGGGACTGTGGGTGGTGAATACATACTATGGTACTATATAGAAACATACTATGGTAAGTAATATGACGTCTTATCGTATCACACTTTTTGTTTCGTCGTATGACGTGGTGTTGTAGAGATTTTCTGGAAAAATTCGGCAGACGTTTGTGTA]

[+] EMBL BM604967             [CCGATTTTGGCGAAGAATATGCCATTAAATCGATGTGGCGCTTAGCACGGATGGCATCGTACTTTATGATGAACCATGGGTTTTCATTTGGTATCGGCGACGTAACACCGAGTCGGAAGCTGCTTGAGGAAAAACAAAAGCTTTTAGAAAATGGATATCGAAAATGTGATGAATATATTGCAGAAATGAAGAAGGGAACGTTGCAGTGTCAGCCGGGTTGCACGGCAGAGCAAACTCTCGAAGCGGTTATGCTAAAGGAACTGTCTAGTATCCGCGAGCTTGCAGCAAAGGCTTGCTTCAGAGAGCTACATCCGACAAACAGTGCACTCATCATGGCGCAATCGGGCTCGAAGGGATCGAACATAAATATCTCTCAAATGATTGCCTGTGTTGGACAACAAGCCATCAACGGCAAAAGAGTACCGAACGGATTCGAGGACCGAGCGTTGCCTCATTTTGAAAAGTTTTCCAAAATTCCTGCTGCTCGTGGTTTCGTACAGAACAGCTTTTATTCCGGTTTAACACCAACGGAATTCTTTTTTCATACCATGGCTGGCCGAGAGGGTCTGGTTGATACTGCAGTGAAAACAGCCGAAACGGGTTACTTTGCAGCGACGTTTGGTAAAGTGCCTTGAAGATTTAGTAGTACAATATGACGGAACAGTACGGAACGCTATTGGGGGAGGTAGTCGAATTTTCATA                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BM606327             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ccgCTTTTTTCATACCATGGCTGGCCGAGAGGGTCTGGTTGATACTGCAGTGAAAACAGCCGAAACGGGTTAC TTGCAGCGACGTTTGGTAAAGTGCCTTGAAGATTTAGTAGTACAATATGACGGAACAGTACGGAACGCTATT GGGGAGGTAGTCGAATTTTCATACGGTGCTGATGGCTTGGATCCGGTTTACATGGAAGTGAAGAACAAACCGGTGGATATTGAAAGACAGTTTATGCATGTGCGAAACATGCTTCCATGCCGCGATGAGATTCCTTTACGAGGGGAGGAAGTGCTAAGCGAAGGAGAACGCATTCTATCCACACCACAATTTTCTAACTGCCGTCAAGATTTTCGTAAGGAATGTTTGTAAGTATTTACCTTATGACTATGGTTGAGCTACTATGGGACTGTGGGTGGTGAATACATACTATGGTACTATATAGAAACATACTATGGTAAGTAATATGACGTCTTATCGTATCACACTTTTTGTTTCGTCGTATGACGTGGTGTTGTAGAGATTTTCTGGAAAAATTCGGCAGACGTTTGTGTA]


>consensus_8829#1 CCGATTTTGGCGAAGAATATGCCATTAAATCGATGTGGCGCTTAGCACGGATGGCATCGT ACTTTATGATGAACCATGGGTTTTCATTTGGTATCGGCGACGTAACACCGAGTCGGAAGC TGCTTGAGGAAAAACAAAAGCTTTTAGAAAATGGATATCGAAAATGTGATGAATATATTG CAGAAATGAAGAAGGGAACGTTGCAGTGTCAGCCGGGTTGCACGGCAGAGCAAACTCTCG AAGCGGTTATGCTAAAGGAACTGTCTAGTATCCGCGAGCTTGCAGCAAAGGCTTGCTTCA GAGAGCTACATCCGACAAACAGTGCACTCATCATGGCGCAATCGGGCTCGAAGGGATCGA ACATAAATATCTCTCAAATGATTGCCTGTGTTGGACAACAAGCCATCAACGGCAAAAGAG TACCGAACGGATTCGAGGACCGAGCGTTGCCTCATTTTGAAAAGTTTTCCAAAATTCCTG CTGCTCGTGGTTTCGTACAGAACAGCTTTTATTCCGGTTTAACACCAACGGAATTCTTTT TTCATACCATGGCTGGCCGAGAGGGTCTGGTTGATACTGCAGTGAAAACAGCCGAAACGG GTTACTTTGCAGCGACGTTTGGTAAAGTGCCTTGAAGATTTAGTAGTACAATATGACGGA ACAGTACGGAACGCTATTGGGGGAGGTAGTCGAATTTTCATACGGTGCTGATGGCTTGGA TCCGGTTTACATGGAAGTGAAGAACAAACCGGTGGATATTGAAAGACAGTTTATGCATGT GCGAAACATGCTTCCATGCCGCGATGAGATTCCTTTACGAGGGGAGGAAGTGCTAAGCGA AGGAGAACGCATTCTATCCACACCACAATTTTCTAACTGCCGTCAAGATTTTCGTAAGGA ATGTTTGTAAGTATTTACCTTATGACTATGGTTGAGCTACTATGGGACTGTGGGTGGTGA ATACATACTATGGTACTATATAGAAACATACTATGGTAAGTAATATGACGTCTTATCGTA TCACACTTTTTGTTTCGTCGTATGACGTGGTGTTGTAGAGATTTTCTGGAAAAATTCGGC AGACGTTTGTGTA



consensusID : consensus_8829#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 788
fasta sequence
                              [TTTTTTATACCATGGCTGGCCGAGAGGGTCTGGTTGATACTGCAGTGAAAACAGCCGAAACGGGTTACTTGCAGCG-ACGTTTGGTAAAGTGCCTTGAAGATTTAGTAGTACAATATGACGGAACAGTACGGAACG--CTATTGGGGAGGTAGTCGAATTTTCATACGGTGCTGATGGCTTGGATCCGGTTTACATGGAAGTGAAGAACAAACCGGTGGATATTGAAAGACAGTTTATGCATGTGCGAAACATGCTTCCATGCCGCGATGAGATTCCTTTACGAGGGGAGGAAGTGCTAAGCGAAGGAGAACGCATTCTATCCACACCACAATTTTCTAACTGCCGTCAAGATTTTCGCAAGGAATGTTTAGATTTTCTGGAAAAATTCGGCAGACGTTTGTGTACACTGCAACGGCTTTATCGTAACGGTCCAAGGGTAACGACGGAAGTTCAGCGGACCACAGCTGGTCAATTGGAAGAATTCTTGTTGCAAGTACGAAATAAATACAACAAGGCCGTAACCGAACCAGGAACAGCCGTAGGTGCATTGGCGGCTCAAAGTATAGGTGAGCCCGGTACGCAAATGACACTGAAAACGTTCCATTTTGCTGGAGTTGCATCAATGAACATCACGCAGGGCAGTGCCTCGTATTGTCGAGATTATTAACGCTACTAAAGCCATTTCTACACCAATAATAACAGCGGAGATCGAAAACAACACCCAACATGGAGTTCGCTCGCAAAGTAAAGGCTCGTATTGAAAAAACGACACTGGGAGAAATTTCGTCTT]

[+] EMBL AGA280881            [TTTTTTATACCATGGCTGGCCGAGAGGGTCTGGTTGATACTGCAGTGAAAACAGCCGAAACGGGTTACTTGCAGCG ACGTTTGGTAAAGTGCCTTGAAGATTTAGTAGTACAATATGACGGAACAGTACGGAACG  CTATTGGGGAGGTAGTCGAATTTTCATACGGTGCTGATGGCTTGGATCCGGTTTACATGGAAGTGAAGAACAAACCGGTGGATATTGAAAGACAGTTTATGCATGTGCGAAACATGCTTCCATGCCGCGATGAGATTCCTTTACGAGGGGAGGAAGTGCTAAGCGAAGGAGAACGCATTCTATCCACACCACAATTTTCTAACTGCCGTCAAGATTTTCGCAAGGAATGTTTAGATTTTCTGGAAAAATTCGGCAGACGTTTGTGTACACTGCAACGGCTTTATCGTAACGGTCCAAGGGTAACGACGGAAGTTCAGCGGA                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AL695605             [ TTTTCATA CAT GCT GCCGAGAGGGTCTGGTTGATACTGCAGTGAAAACAGCCGAAACGGGTTACTTGCAGCGCACGTTTGGTAAAGTGCCTTGAAGATTTAGTAGTACAATATGACGGAACAGTACGGAACGCTCTATTGGGGAGGTAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BM584676             [                                                                                                                  ccgGACGGAACAGTACGGAACG  CTATTGGGGAGGTAGTCGAATTTTCATACGGTGCTGATGGCTTGGATCCGGTTTACATGGAAGTGAAGAACAAACCGGTGGATATTGAAAGACAGTTTATGCATGTGCGAAACATGCTTCCATGCCGCGATGAGATTCCTTTACGAGGGGAGGAAGTGCTAAGCGAAGGAGAACGCATTCTATCCACACCACAATTTTCTAACTGCCGTCAAGATTTTCGTAAGGAATGTTTAGATTTTCTGGAAAAATTCGGCAGACGTTTGTGTACACTGCAACGGCTTTATCGTAACGGTCCAAGGGTAACGACGGAAGTTCAGCGGACCACAGCTGGTCAATTGGAAGAATTCTTGTTGCAAGTACGAAATAAATACAACAAGGCCGTAACCGAACCAGGAACAGCCGTAGGTGCATTGGCGGCTCAAAGTATAGGTGAGCCCGGTACGCAAATGACACTGAAAACGTTCCATTTTGCTGGAGTTGCATCAATGAACATCACGCAGGGCAGTGCCTCGTATTGTCGAGATTATTAACGCTACTAAAGCCATTTCTACACCAATAATAACAGCGGAGATCGAAAACAACACCCAACATGGAGTTCGCTCGCAAAGTAAAGGCTCGTATTGAAAAAACGACACTGGGAGAAATTTCGTCTT]


>consensus_8829#2 TTTTTTATACCATGGCTGGCCGAGAGGGTCTGGTTGATACTGCAGTGAAAACAGCCGAAA CGGGTTACTTGCAGCGACGTTTGGTAAAGTGCCTTGAAGATTTAGTAGTACAATATGACG GAACAGTACGGAACGCTATTGGGGAGGTAGTCGAATTTTCATACGGTGCTGATGGCTTGG ATCCGGTTTACATGGAAGTGAAGAACAAACCGGTGGATATTGAAAGACAGTTTATGCATG TGCGAAACATGCTTCCATGCCGCGATGAGATTCCTTTACGAGGGGAGGAAGTGCTAAGCG AAGGAGAACGCATTCTATCCACACCACAATTTTCTAACTGCCGTCAAGATTTTCGCAAGG AATGTTTAGATTTTCTGGAAAAATTCGGCAGACGTTTGTGTACACTGCAACGGCTTTATC GTAACGGTCCAAGGGTAACGACGGAAGTTCAGCGGACCACAGCTGGTCAATTGGAAGAAT TCTTGTTGCAAGTACGAAATAAATACAACAAGGCCGTAACCGAACCAGGAACAGCCGTAG GTGCATTGGCGGCTCAAAGTATAGGTGAGCCCGGTACGCAAATGACACTGAAAACGTTCC ATTTTGCTGGAGTTGCATCAATGAACATCACGCAGGGCAGTGCCTCGTATTGTCGAGATT ATTAACGCTACTAAAGCCATTTCTACACCAATAATAACAGCGGAGATCGAAAACAACACC CAACATGGAGTTCGCTCGCAAAGTAAAGGCTCGTATTGAAAAAACGACACTGGGAGAAAT TTCGTCTT



consensusID : consensus_8829#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 224
fasta sequence
                              [CAAGATCGCCGAGTGCTGACACATACGCTACTCAATTTGCACATCAAAACTAAAGGCCTTGGGAAGGCAAGAGGAAATTGTTGGAACGTATATGGACCATCACTCATTATTCCAAATTTCCCCGGGGCCCCCTGGGTACCAGGGCAGCAAAAGCACAGGGCCACAGCTTGAATGCGGAACTGCGAACGGCTCATCACGGCAATACCAAACGTAGTGGTTGCCGG]

[+] EMBL AL931597             [CAAGATCGCCGAGTGCTGACACATACGCTACTCAATTTGCACATCAAAACTAAAGGCCTTGGGAAGGCAAGAGGAAATTGTTGGAACGTATATGGACCATCACTCATTATTCCAAATTTCCCCGGGGCCCCCTGGGTACCAGGGCAGCAAAAGCACAGGGCCACAGCTTGAATGCGGAACTGCGAACGGCTCATCACGGCAATACCAAACGTAGTGGTTGCCGG]


>consensus_8829#3 CAAGATCGCCGAGTGCTGACACATACGCTACTCAATTTGCACATCAAAACTAAAGGCCTT GGGAAGGCAAGAGGAAATTGTTGGAACGTATATGGACCATCACTCATTATTCCAAATTTC CCCGGGGCCCCCTGGGTACCAGGGCAGCAAAAGCACAGGGCCACAGCTTGAATGCGGAAC TGCGAACGGCTCATCACGGCAATACCAAACGTAGTGGTTGCCGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8829#0      ------------------------------------------------------------
consensus_8829#3      ------------------------------------------------------------
consensus_8829#1      CCGATTTTGGCGAAGAATATGCCATTAAATCGATGTGGCGCTTAGCACGGATGGCATCGT 60
consensus_8829#2      ------------------------------------------------------------
                                                                                  

consensus_8829#0      ------------------------------------------------------------
consensus_8829#3      ------------------------------------------------------------
consensus_8829#1      ACTTTATGATGAACCATGGGTTTTCATTTGGTATCGGCGACGTAACACCGAGTCGGAAGC 120
consensus_8829#2      ------------------------------------------------------------
                                                                                  

consensus_8829#0      ------------------------------------------------------------
consensus_8829#3      ------------------------------------------------------------
consensus_8829#1      TGCTTGAGGAAAAACAAAAGCTTTTAGAAAATGGATATCGAAAATGTGATGAATATATTG 180
consensus_8829#2      ------------------------------------------------------------
                                                                                  

consensus_8829#0      -------------------------------------------------CCGCGGACGCG 11
consensus_8829#3      ------------------------------------------------------------
consensus_8829#1      CAGAAATGAAGAAGGGAACGTTGCAGTGTCAGCCGGGTTGCACGGCAGAGCAAACTCTCG 240
consensus_8829#2      ------------------------------------------------------------
                                                                                  

consensus_8829#0      TGGGTGCTGGAGTTGCATCAATGAACATCACGCAGGGAGTGCCTCGTATTGTCGAGATTA 71
consensus_8829#3      ------------------------------------------------------------
consensus_8829#1      AAGCGGTTATGCTAAAGGAACTGTCTAGTATCCGCGAGCTTGCAGCAAAGGCTTGCTTCA 300
consensus_8829#2      ------------------------------------------------------------
                                                                                  

consensus_8829#0      TTAACGCTACTAAAGCCATTTCTACACCAATAATAACAGCGGAGATCGAAAACAACACCA 131
consensus_8829#3      ------------------------------------------------------------
consensus_8829#1      GAGAGCTACATCCGACAAACAGTGCACTCATCATGGCGCAATCGGGCTCGAAGGGATCGA 360
consensus_8829#2      ------------------------------------------------------------
                                                                                  

consensus_8829#0      ACATGGAGTTCGCTCGCAAAGTAAAGGCTCGTATTGAAAAAACGACACTGGGAGAAATTT 191
consensus_8829#3      ------------------------------------------------------------
consensus_8829#1      ACATAAATATCTCTCAAATGATTGCCTGTGTTGGACAACAAGCCATCAACGGCAAAAGAG 420
consensus_8829#2      ------------------------------------------------------------
                                                                                  

consensus_8829#0      CGTCTTATATAGAGGAGGTGTATAAAATGAATGAGTGTTTTCTTCTCATTAAGCTCGACC 251
consensus_8829#3      ------------------------------------------------------------
consensus_8829#1      TACCGAACGGATTCGAGGACCGAGCGTTGCCTCATTTTGAAAAGTTTTCCAAAATTCCTG 480
consensus_8829#2      ------------------------------------------------------------
                                                                                  

consensus_8829#0      TTGGTCGCATTAGAGTGCTGGGC--TTGGAAGTTAATGCTGACACCATACGCTACTCAAT 309
consensus_8829#3      ------------------CAAGA--TCGCCG---AGTGCTGACAC-ATACGCTACTCAAT 36
consensus_8829#1      CTGCTCGTGGTTTCGTACAGAACAGCTTTTATTCCGGTTTAACACCA-ACGGAATTCTTT 539
consensus_8829#2      ----------------------------------------------------------TT 2
                                                                                 *

consensus_8829#0      TTGCACATCAAAACTAAAGCT------GAAGCAAGAGAATGT------GGAAGTATATGG 357
consensus_8829#3      TTGCACATCAAAACTAAAGGCCTTGGGAAGGCAAGAGGAAATTGTTG-GAACGTATATGG 95
consensus_8829#1      TTTCATACCATGGCTGGCCGA----GAGGGTCTGGTTGATACTGCAGTGAAAACAGCCGA 595
consensus_8829#2      TTTTATACCATGGCTGGCCGA----GAGGGTCTGGTTGATACTGCAGTGAAAACAGCCGA 58
                      **  * * **   **                *  *   *         * *   *   * 

consensus_8829#0      ACCATCACTCATTATC----ATT----CGG-----CCTG------ACAGCAGCAA--GCA 396
consensus_8829#3      ACCATCACTCATTATTCCAAATTTCCCCGGGGCCCCCTGGGTACCAGGGCAGCAAAAGCA 155
consensus_8829#1      AACGGGTTACTTTGCAGCGACGTTTGGTAAAGTGCCTTG-------AAGATTTAGTAGTA 648
consensus_8829#2      AACGGGTTACTT-GCAGCGACGTTTGGTAAAGTGCCTTG-------AAGATTTAGTAGTA 110
                      * *      * *          *            * **         *    *   * *

consensus_8829#0      CAG--CCACAGCTTGAATGCGGAACTGC-AACGGCT--CATCACAGCAATACCAAACG-T 450
consensus_8829#3      CAGGGCCACAGCTTGAATGCGGAACTGCGAACGGCT--CATCACGGCAATACCAAACG-T 212
consensus_8829#1      CAATATGACGGAAC-AGTACGGAAC-GCTATTGGGGGAGGTAGTCGAATTTTCATACGGT 706
consensus_8829#2      CAATATGACGGAAC-AGTACGGAAC-GCTATTGGGG-AGGTAGTCGAATTTTCATACGGT 167
                      **     ** *    * * ****** ** *  **      *    * * *  ** *** *

consensus_8829#0      AGTGGTTGCCGGATTACCGCAAGTATCTC-GCGCAGTTATAGCCGTCGATGATTCCCGCG 509
consensus_8829#3      AGTGGTTGCCGG------------------------------------------------ 224
consensus_8829#1      GCTGATGGCTTGGATCCGGTTTACATGGAAGTGAAGAACAAACCGGTGGATATTGAAAGA 766
consensus_8829#2      GCTGATGGCTTGGATCCGGTTTACATGGAAGTGAAGAACAAACCGGTGGATATTGAAAGA 227
                        ** * **  *                                                

consensus_8829#0      GCACGCCCAAGTATCGATTATGCGTGGAAGGATGTGGGTTACGTGATGTAATGGGCACAT 569
consensus_8829#3      ------------------------------------------------------------
consensus_8829#1      CAGTTTATGCATGTGCGAAACATGCTTCCATGCCGCGATGAGATTCCTTTACGAGGGGAG 826
consensus_8829#2      CAGTTTATGCATGTGCGAAACATGCTTCCATGCCGCGATGAGATTCCTTTACGAGGGGAG 287
                                                                                  

consensus_8829#0      ACGGAGTGATCGGAAACAGAACTAAGAGTAACAACATTTTGGAGGTGTACCAAACGCTAG 629
consensus_8829#3      ------------------------------------------------------------
consensus_8829#1      GAAGTGCTAAGCGAAGGAGAACGCATTCTATCCACACCACAATTTTCTAACTGCCGTCAA 886
consensus_8829#2      GAAGTGCTAAGCGAAGGAGAACGCATTCTATCCACACCACAATTTTCTAACTGCCGTCAA 347
                                                                                  

consensus_8829#0      GTATTGAAGCAGCGCGGACTA------CCATTATGACTGAAATTACTGAAGTAATGGAGG 683
consensus_8829#3      ------------------------------------------------------------
consensus_8829#1      GATTTTCGTAAGGAATGTTT---------GTAAGTATTTACCTTATGACTATGGTTGAGC 937
consensus_8829#2      GATTTTCGCAAGGAATGTTTAGATTTTCTGGAAAAATTCGGCAGACGTTTGTG--TACAC 405
                                                                                  

consensus_8829#0      GGCATGGTATGAGCGTAGATCATCGACACATCATGCTACTCTCTGGCCAGATGACATCGA 743
consensus_8829#3      ------------------------------------------------------------
consensus_8829#1      TACTATGGGACTGTGG--GTGGTGAATACATA-CTATGGTACTATATAGAAACATACTAT 994
consensus_8829#2      TGCAACGGCTTTATCGTAACGGTCCAAGGGTAACGACGGAAGTTCAGCGGACCACAGC-T 464
                                                                                  

consensus_8829#0      GGGGTGAAGTGCTTGGAATCACCCGTCACGGTCTTGCGAAAATGCGCGAGTCCGTGTTTA 803
consensus_8829#3      ------------------------------------------------------------
consensus_8829#1      GGTAAGTAATATGACGTCTTATC-GTATCACACTTTTTGTTTCGTCGTATGACGTGGTGT 1053
consensus_8829#2      GGTCAATTGGAAGAATTCTTGTT-GCAA-GTACGAAATAAATACAACAAGGCCGTAACCG 522
                                                                                  

consensus_8829#0      ACCTTGCATCGTTTGAAAAAACAGCGGATCATTTGTTTGATGCTGCGTACTATGGCCAAA 863
consensus_8829#3      ------------------------------------------------------------
consensus_8829#1      TGTAGAGATTTTCTGGAAAAAT-TCGGCAGACGTTTGTGTA------------------- 1093
consensus_8829#2      AACCAGGAACAGCCGTAGGTGCATTGGCGGCTCAAAGTATAGGTGAGCCCGGTACGCAAA 582
                                                                                  

consensus_8829#0      CGGATTCAGTGGATGGCGTTTCGGAGCGTATCATATTGGGAATGCCTGCATCAATTGGTA 923
consensus_8829#3      ------------------------------------------------------------
consensus_8829#1      ------------------------------------------------------------
consensus_8829#2      TGACACTGAAAACGTTCCATTTTGCTGGAGTTGCATCAATGAACATCACGCAGGGCAGTG 642
                                                                                  

consensus_8829#0      CCGGATTATTCAAACTAATTCATAATCACAGCAACACACAACTTGAGTCGATTAGTTGTC 983
consensus_8829#3      ------------------------------------------------------------
consensus_8829#1      ------------------------------------------------------------
consensus_8829#2      CCTCGTATTGTCGAGATTATTAACGCTACTAAAGCCATTTCTACACCAATAATAACAGCG 702
                                                                                  

consensus_8829#0      CTATTTTTAATGTGGTGTAACCTTAACCATAACTCCTGATAAGAGTATCATTTGTGGTGC 1043
consensus_8829#3      ------------------------------------------------------------
consensus_8829#1      ------------------------------------------------------------
consensus_8829#2      GAGATCGAAAACAACACCCAACATGGAGTTCGCTCGCAAAGTAAAGGCTCGTATTGAAAA 762
                                                                                  

consensus_8829#0      CGTGCCATCTAACACAGATAGCATCCCGGAGCGTACGCACGGATAATAAAGAGATCACTT 1103
consensus_8829#3      ------------------------------------------------------------
consensus_8829#1      ------------------------------------------------------------
consensus_8829#2      AACGACACTGGGAGAAATTTCGTCTT---------------------------------- 788
                                                                                  

consensus_8829#0      GATCAACCTAACTG 1117
consensus_8829#3      --------------
consensus_8829#1      --------------
consensus_8829#2      --------------
                                    




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)