These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8847#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 727 fasta sequence [ACCCACGCGTCCGGTTCATCCGAGTAACAGCAGCAGCAGCAGCAGCATCCAACCGGTTGCCTTTAGTACAGTAGTGTACTTTATAGTGTTGCGTGTGAGAGTGTGTTCAATCCCCGTATCCGAGGATGTTGAAGAAAACGATCGTTCTGAGCTGCCTGGTTGCGGTGGTTCTCTGCGCGGCTGACCTGGAAACGGCCGAAACTTCCTGGGGAGGCGGTGGTGGTGGTGGCTGGAGCAGCGGCGGAGGTGGTGGCGGCTGGAGCAGTGGCGGCGGCGGCGGCTATGGCGGTGGCAAAAAGGTGATCATCATCTCGTCCGGTGGCGGTGGACACGGAGGCAGCGGAGGCTGGAGCAGCGGTGGACGCAGCCTCGGCGGTGGTGGCGGATGGTCTAGCGGTGGCAGCGGACTTGGCAAGGGCTGGTCCAGCGGCGGTGGATCGTACGGAGGCGGTAGCTCTTACGGAGGCGGTGGCTACTCGAAGGGTTGGCCCGTCAGCAAGGGCTGGTCCAGCGGAGGCTCCTCGTTCGGTGGCGGATACGGTGGTGGCAGCAGC-T-TTGGCGGTGGCCACTCGGGAGGTGGCTGGAGCTCGGGCGGCAGCAGCCTCGGTGGATGG-CCGTCGGGTGGTGGCGTGAGCAAGGGATGGCCGTCGTCGGGCGGTGGATACGGTGGCAGCCA-GGGATGGTCCTCGGGCGGTAGCGGTGGATACGGCGGCGGTAGCCATGGAAG] [+] EMBL BM626027 [ACCCACGCGTCCGGTTCATCCGAGTAACAGCAGCAGCAGCAGCTGCATCCAACCGGTTGCCTTTAGTACAGTAGTGTACTTTATAGTGTTGCGTGTGAGAGTGTGTTCAATCCCCGTATCCGAGGATGTTGAAGAAAACGATCGTTCTGAGCTGCCTGGTTGCGGTGGTTCTCTGCGCGGCTGACCTGGAAACGGCCGAAACTTCTTGGGGAGGCGGTGGTGGTGGTGGCTGGAGCAGCGGCGGAGGTGGTGGCGGCTGGAGCAGCGGCGGCGGTGGCGGTTATGGCGGTGGCAAGAACGTGATCATCATTTCGTCCGGCGGCGGTGGACACGGAGGCAGCGGAGGCTGGAGCAGCGGTGGACGCAGCCTCGGCGGTGGTGGCGGATGGTCTAGCGGTGGTAGCGGACTTGGCAAGGGCTGGTCCAGCGGCGGTGGATCGTACGGAGGCGGTGGCTCTTACGGAGGCGGTGGCTACTCTAAGGGTTGGCCCGTCAGCAAGGGCTGGTCCAGCGGAGGCTCCTCGTTCGGTGGCGGATACGGTGGTGGCAGCAGC T TTGGCGGTGGCCACTCGGGAGGTGGCTGGAGCTCGGGCGGCAGCAGCCTCGGTGGATGG CCGTCGGGTGGTGGCGTAAGCAAGGGATGGCCGTCGTCGGGCGGTGGATACGGTGGCAGCCAGGGGATGGTCCTCG ] [+] EMBL BM611980 [ CCGGTTCATCCGAGTAA CAGCAGCAGCATCCAATCGGTGGTTTTTAGTACAGTAGTGTACTTTATAGTGTTGCGTGAGAGAGTGTGTTTAATCCCCGTATCCGAGGATGTTGAAGAAAACGATCGTTCTGAGCTGCCTGGTTGCGGTGGTTCTCTGCGCGGCTGACCTGGAAACGGCCGAAACTTCCTGGGGAGGCGGTGGTGGTGGTGGCTGGAGCAGCGGCGGAGGTGGTGGTGGCTGGAGCGGTGGCGGCGGCGGCGGCTATGGCGGTGGCAAAAAGGTGATCATCATCTCGTCCGGTGGCGGTGGACACGGAGGTAGCGGAGGCTGGAGCAGCGGTGGACGCAGCCTCGGCGGTGGTGGCGGATGGTCTAGCGGTGGCAGCGGACTTGGCAAGGGCTGGTCCAGCGGCGGTGGATCGTACGGAGGCGGTAGCTCTTACGGAGGCGGTGGCTACTCGAAGGGTTGGCCCGTCAGCAAGGGCTGGTCCAGCGGAGGCTCCTCGTTCGGTGGCGGATACGGTGGTGGCAGCAGC T TTGGCGGTGGCCACTCGGGAGGTGGCTGGAGCTCGGGCGGCAGCAGCCTCGGTGGATGG CCGTCGGGTGGTGGCGTGAGCAAAGGATGGCCGTCGTCGGGCGGTGGATACGGTGGCAGCCA GGGATGGT ] [+] EMBL BM650600 [ CCGGTTCATCCGAGTAACAGCAGCAGCAGCAGCAGCATCCAACCGGTTGCCTTTAGTACAGTAGTGTACTTTATAGTGTTGCGTGTGAGAGTGTGTTCAATCCCCGTATCCGAGGATGTTGAAGAAAACGATCGTTCTGAGCTGCCTGGTTGCGGTGGTTCTCTGCGCGGCTGACCTGGAAACGGCCGAAACTTCTTGGGGAGGCGGTGGTGGTGGTGGCTGGAGCAGCGGCGGAGGTGGTGGCGGCTGGAGCAGCGGCGGCGGTGGCGGTTATGGCGGTGGCAAGAAGGTGATCATCATTTCGTCCGGCGGCGGTGGACACGGAGGCAGCGGAGGCTGGAGCAGCGGTGGACGCAGCCTCGGCGGTGGTGGCGGATGGTCTAGCGGTGGTAGCGGACTTGGCAAGGGCTGGTCCAGCGGCGGTGGATCGTACGGAGGCGGTGGCTCTTACGGAGGCGGTGGCTACTCTAAGGGTTGGCCCGTCAGCAAGGGCTGGTCCAGCGGAGGCTCCTCGTTCGGTGGCGGATACGGTGGTGGCAGCAGC T TTGGCGGTGGCCACTCGGGAGGTGGCTGGAGCTCGGGCG ] [+] EMBL BM643382 [ ccgcgAGTAACAGCAGCAGCATCCAATCGGTGGTTTTTAGTACAGTAGTGTACTTTATAGTGTTGCGTGAGAGAGTGTGTTTAATCCCCGTATCCGAGGATGTTGAAGAAAACGATCGTTCTGAGCTGCCTGGTTGCGGTGGTTCTCTGCGCGGCTGACCTGGAAACGGCCGAAACTTCCTGGGGAGGCGGTGGTGGTGGTGGCTGGAGCAGCGGCGGAGGTGGTGGTGGCTGGAGCGGTGGCGGCGGCGGCGGCTATGGCGGTGGCAAAAAGGTGATCATCATCTCGTCCGGTGGCGGTGGACACGGAGGTAGCGGAGGCTGGAGCAGCGGTGGACGCAGCCTCGGCGGTGGTGGCGGATGGTCTAGCGGTGGCAGCGGACTTGGCAAGGGCTGGTCCAGCGGCGGTGGATCGTACGGAGGCGGTAGCTCTTACGGAGGCGGTGGCTACTCGAAGGGTTGGCCCGTCAGCAAGGGCTGGTCCAGCGGAGGCTCCTCGTTCGGTGGCGGATACGGTGGTGGCAGCAGC T TTGGCGGTGGCCACTCGGGAGGTGGCTGGAGCTCGGGCGGCAGCAGCCTCGGTGGATGG CCGTCGGGTGGTGGCGTGAGCAAGGGATGGCCGTCGTCGGGCGGTGGATACGGTGGCAGC ] [+] EMBL BM632910 [ ccgGCAGCAGCAGCAGCATCCAACCGGTTGCCTTTAGTACAGTAGTGTACTTTATAGTGTTGCGTGTGAGAGTGTGTTCAATCCCCGTATCCGAGGATGTTGAAGAAAACGATCGTTCTGAGCTGCCTGGTTGCGGTGGTTCTCTGCGCGGCTGACCTGGAAACGGCCGAAACTTCTTGGGGAGGCGGTGGTGGTGGTGGCTGGAGCAGCGGCGGAGGTGGTGGCGGCTGGAGCAGCGGCGGCGGTGGCGGTTATGGCGGTGGCAAGAAGGTGATCATCATTTCGTCCGGCGGCGGTGGACACGGAGGCAGCGGAGGCTGGAGCAGCGGTGGACGCAGCCTCGGCGGTGGTGGCGGATGGTCTAGCGGTGGTAGCGGACTTGGCAAGGGCTGGTCCAGCGGCGGTGGATCGTACGGAGGCGGTGGCTCTTACGGAGGCGGTGGCTACTCTAAGGGTTGGCCCGTCAGCAAGGGCTGGTCCAGCGGAGGCTCCTCGTTCGGTGGCGGATACGGTGGTGGCAGCAGCTT TTGGCGGTGGCCACTCGGGAGGTGGCTGGAGCTCGGGCGGCAGCAGCCTCGGTGGATGGCCCGTCGGGTGGTGGCGTAAGCAAGGGATGGCC ] [+] EMBL BM638638 [ ccgTTTAGTACAGTAGTGTACTTTATAGTGTTGCGTGTGAGAGTGTGTTCAATCCCCGTATCCGAGGATGTTGAAGAAAACGATCGTTCTGAGCTGCCTGGTTGCGGTGGTTCTCTGCGCGGCTGACCTGGAAACGGCCGAAACTTCCTGGGGAGGCGGTGGTGGTGGTGGCTGGAGCAGCGGCGGAGGTGGTGGCGGCTGGAGCAGTGGCGGCGGCGGCGGCTATGGCGGTGGCAAAAAGGTGATCATCATCTCGTCCGGTGGCGGTGGACACGGAGGCAGCGGCGGCTGGAGCAGCGGTGGACGCAGCCTCGGCGGTGGTGGCGGATGGTCTAGCGGCGGCAGCGGACTTGGCAAGGGCTGGTCCAGCGGCGGTGGATCGTACGGAGGCGGTAGCTCTTACGGAGGCGGTGGCTACTCGAAGGGTTGGCCCGTCAGCAAGGGCTGGTCCAGCGGAGGCTCCTCGTTCGGTGGCGGATACGGTGGTGGCAGCAGCTT TTGGCGGTGGCCACTCGGGAGGTGGCTGGAGCTCGGGCGGCAGC ] [+] EMBL BM620716 [ ccgCTGGAAACGGCCGAAACTTCCTGGGGAGGCGGTGGTGGTGGTGGCTGGAGCAGCGGCGGAGGTGGTGGTGGCTGGAGCGGTGGCGGCGGCGGCGGCTATGGCGGTGGCAAAAAGGTGATCATCATCTCGTCCGGTGGCGGTGGACACGGAGGTAGCGGAGGCTGGAGCAGCGGTGGACGCAGCCTCGGCGGTGGTGGCGGATGGTCTAGCGGTGGCAGCGGACTTGGCAAGGGCTGGTCCAGCGGCGGTGGATCGTACGGAGGCGGTAGCTCTTACGGAGGCGGTGGCTACTCGAAGGGTTGGCCCGTCAGCAAGGGCTGGTCCAGCGGAGGCTCCTCGTTCGGTGGCGGATACGGTGGTGGCAGCAGC T TTGGCGGTGGCCACTCGGGAGGTGGCTGGAGCTCGGGCGGCAGCAGCCTCGGTGGATGG CCGTCGGGTGGTGGCGTGAGCAAGGGATGGCCGTCGTCGGGCGGTGGATACGGTGGCAGCCA GGGATGGTCCTCGGGCGGTAGCGGTGGATACGGCGGCGGTAGCCATGGAAG] [+] EMBL BM633845 [ GCGGCGGAGGTGGTGGCGGCTGGAGCAGTGGCGGCGGCGGCGGCTATGGCGGTGGCAAAAAGGTGATCATCATCTCGTCCGGTGGCGGTGGACACGGAGGCAGCGGCGGCTGGAGCAGCGGTGGACGCAGCCTCGGCGGTGGTGGCGGATGGTCTAGCGGCGGCAGCGGACTTGGCAAGGGCTGGTCCAGCGGCGGTGGATCGTACGGAGGCGGTAGCTCTTACGGAGGCGGTGGCTACTCGAAGGGTTGGCCCGTCAGCAAGGGCTGGTCCAGCGGAGGCTCCTCGTTCGGTGGCGGATACGGTGGTGGCAGCAGC T TTGGCGGTGGCCACTCGGGAGGTGGCTGGAGCTCGGGCGGCAGCAGCCTCGGTGGATGG CCATCGGGTGGTGGCGTGAGCAAGGGATGGCCGTCGTCGGGCGGTGGATACGGTG ] [+] EMBL BM630506 [ GCGGCGGAGGTGGTGGCGGCTGGAGCAGCGGCGGCGGTGGCGGTTATGGCGGTGGCAAGAAGGTGATCATCATTTCGTCCGGCGGCGGTGGACACGGAGGCAGCGGAGGCTGGAGCAGCGGTGGACGCAGCCTCGGCGGTGGTGGCGGATGGTCTAGCGGTGGTAGCGGACTTGGCAAGGGCTGGTCCAGCGGCGGTGGATCGTACGGAGGCGGTGGCTCTTACGGAGGCGGTGGCTACTCTAAGGGTTGGCCCGTCAGCAAGGGCTGGTCCAGCGGAGGCTCCTCGTTCGGTGGCGGATACGGTGGTGGCAGCAGC T TTGGCGGTGGCCACTCGGGAGGTGGCTGGAGCTCGGGCGGCAGCAGCCTCGGTGGATGG CCGTCGGGTGGTGGCGTAAGCAAGGGATGGCCGTCGTCGGGCG ] [+] EMBL BM655242 [ GCGGCGGAGGTGGTGGCGGCTGGAGCAGTGGCGGCGGCGGCGGCTATGGCGGTGGCAAAAAGGTGATCATCATCTCGTCCGGTGGCGGTGGACACGGAGGCAGCGGCGGCTGGAGCAGCGGTGGACGCAGCCTCGGCGGTGGTGGCGGATGGTCTAGCGGCGGCAGCGGACTTGGCAAGGGCTGGTCCAGCGGCGGTGGATCGTACGGAGGCGGTAGCTCTTACGGAGGCGGTGGCTACTCGAAGGGTTGGCCCGTCAGCAAGGGCTGGTCCAGCGGAGGCTCCTCGTTCGGTGGCGGATACGGTGGTGGCAGCAGC TCTTGGCGGTGGCC ] [+] EMBL BM618268 [ GCGGCGGAGGTGGTGGCGGCTGGAGCAGTGGCGGCGGCGGCGGCTATGGCGGTGGCAAGAAGGTGATCATCATCTCGTCCGGCGGCGGTGGACACGGAGGCAGTGGAGGCTGGAGCAGCGGAGGACGCAGCCTCGGCGGTGGTGGCGGATGGTCTAGCGGCGGCAGCGGACTTGGCAAGGGCTGGTCCAGCGGCGGTGGATCGTACGGAGGCGGTAGC ] consensusID : consensus_8847#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 526 fasta sequence [CCGTGTCTTTCCAGTGCGCGAAACCGGTTTTTCCCCAGCCAGGGGGCTGTAGACATGGGGGGGGGTGAAGCTTTATTTGAATCTACACTCATTTTCACTCATCATTATTCGTAAATTCAAATAATTTAACATTCATTTTGTTATTTCTTTGTTAAGGATGAGCATACTACGACTATCTCCATTATTTCCTAAAATGTACTAACCAAGAAGATTCTCTAACAGTAATTTCAGCAATATAAGCAATGCTATAAACACTAGATTGAACATTATTTTCATTATTGAATAATATTTTTGTATGCGTTCTGTCTGTATTTCAGACTAGTCAAATGATAGTGGAAGATATTTTGGAATCTTGGCGCATGATATTAGTTTTCATAGCATGTTCTGTCTTGGCTAGTTTAATTCTCATCGCGATGCTTCGATGGATAGCAAAACCTCTAATATGGATTTCGATTATTGGAGTAATTACTGCGCTAAGCTATGGAGTTTACTACAGCTTCCGGCAATACCAGCAAATCCGTGCCAA] [+] EMBL BM627070 [CCGTGTCTTTCCAGTGCGCGAAACCGGTTTTTCCCCAGCCAGGGGGCTGTAGACATGGGGGGGGGTGAAGCTTTATTTGAATCTACACTCATTTTCACTCATCATTATTCGTAAATTCAAATAATTTAACATTCATTTTGTTATTTCTTTGTTAAGGATGAGCATACTACGACTATCTCCATTATTTCCTAAAATGTACTAACCAAGAAGATTCTCTAACAGTAATTTCAGCAATATAAGCAATGCTATAAACACTAGATTGAACATTATTTTCATTATTGAATAATATTTTTGTATGCGTTCTGTCTGTATTTCAGACTAGTCAAATGATAGTGGAAGATATTTTGGAATCTTGGCGCATGATATTAGTTTTCATAGCATGTTCTGTCTTGGCTAGTTTAATTCTCATCGCGATGCTTCGATGGATAGCAAAACCTCTAATATGGATTTCGATTATTGGAGTAATTACTGCGCTAAGCTATGGAGTTTACTACAGCTTCCGGCAATACCAGCAAATCCGTGCCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8847#0 ACCCACGCGTCCGGTTCATCCGAGTAACAGCAGCAGCAGCAGCAGCATCCAACCGGTTGC 60 consensus_8847#1 ----------CCGTGTCTTTCCAGTGCGCGAAACCGGTTTTTCCCCAGCCAGGGGGCTGT 50 *** ** * * *** * * * * * ** *** ** ** consensus_8847#0 CTTTA-GTACAGTAGTGTA-CTTTATAGTGTTGCGTGTGAGAGTGTGTTCAATCCCCGT- 117 consensus_8847#1 AGACATGGGGGGGGGTGAAGCTTTAT----TTGAATCTACACTCATTTTCACTCATCATT 106 * * * *** * ****** *** * * * **** ** * * consensus_8847#0 ATCCGAGGATGTTGAAGAA---AACGATCGTTCTGA-GCTGCCTGGTTGCGGTGGTTCTC 173 consensus_8847#1 ATTCGTAAAT-TCAAATAATTTAACATTCATTTTGTTATTTCTTTGTTAAGGATGAGCAT 165 ** ** ** * ** ** *** ** ** ** * * * *** ** * * consensus_8847#0 TGCGCGGCTGACCTGGAAACGGCCGAAACT-TCCTGGGGAGGCGGTGGTGGTGGTGGCTG 232 consensus_8847#1 ACTACGACTATCTCCATTATTTCCTAAAATGTACTAACCAAGAAGATTCTCTAACAGTAA 225 ** ** * * ** *** * * ** * * * * * consensus_8847#0 GAGCAGCGGCGGAGGTGGTGGCGGCTGGAGCAGTGGCGGCGGCGGCGGCTATGGCGGTGG 292 consensus_8847#1 TTTCAGCAATATAAGCAATGCTAT---AAACACTAGATTGAACATTATTTTCATTATTG- 281 **** * * ** * ** * * * * ** consensus_8847#0 CAAAAAGGTGATCATCATCTCGTCCGGTGGCGGTGGACACGGAGGCAGCGGAGGCTGGAG 352 consensus_8847#1 -AATAATATTTTTGT-ATGCGTTCTGTCTGTATTTCAGACTAGTCAAATGATAGTGGAAG 339 ** ** * * * ** ** * * * * ** * * * * ** consensus_8847#0 CAGCGGTGGACGCAGCCTCGGCG-GTGGTGGCGGATGGTCTAGCGGTGGCAGCGGACTTG 411 consensus_8847#1 ATATTTTGGA----ATCTTGGCGCATGATATTAGTTTTCATAGCA-TGTT--CTGTCTTG 392 **** ** **** ** * * * **** ** * * **** consensus_8847#0 GCAAGGGCTGGTCCAGCGGCGGTGGATCGTACGGAGGCGGTAGCTCTTACGGAGGCGGTG 471 consensus_8847#1 GCTAGTTTAATTCTCATCGCGATGCTTCGATGGATAGCAAAACCTCTAATATGGATTTCG 452 ** ** ** *** ** *** * ** * **** * * * consensus_8847#0 GCTACTCGAAGGGTTGGCCCGTCA-GCAAGGGCTGGTCCAGCGGAGGCTCCTCGTTCGGT 530 consensus_8847#1 ATTATTGGAGTAATTACTGCGCTAAGCTATGG--AGTTTACTACAGCTTCCGGCAATACC 510 ** * ** ** ** * ** * ** ** * ** *** consensus_8847#0 GGCGGATACGGTGGTGGCAGCAGCTTTGGCGGTGGCCACTCGGGAGGTGGCTGGAGCTCG 590 consensus_8847#1 AGCAAATCCG-TGCCAA------------------------------------------- 526 ** ** ** ** consensus_8847#0 GGCGGCAGCAGCCTCGGTGGATGGCCGTCGGGTGGTGGCGTGAGCAAGGGATGGCCGTCG 650 consensus_8847#1 ------------------------------------------------------------ consensus_8847#0 TCGGGCGGTGGATACGGTGGCAGCCAGGGATGGTCCTCGGGCGGTAGCGGTGGATACGGC 710 consensus_8847#1 ------------------------------------------------------------ consensus_8847#0 GGCGGTAGCCATGGAAG 727 consensus_8847#1 ----------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||