Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 8852 cluster # 8852       Sequences # 12       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8852#0 length = 1451 sequences # 10  
consensus_8852#1 length = 687 sequences # 1  
consensus_8852#2 length = 435 sequences # 1  

consensusID : consensus_8852#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 1451
fasta sequence
                              [AACTATTCAGATGTGTTTGCTATGTT-TAAAAGAACCGTTTATACAAGTAAGTATCTAGCTAAGTAAGATTTGCGATCAACATGGCACCAAAATTTAACATCGCTACGGCGAAATATGTTTAGGAACAAAACAATGCAAAA-AGAAAAAAAAACAAATGATTCGATCGATAACCGAATTGGCACGGATTCGAAGCCGTGCGCCCAATTTTTGAAGCTAATTTCACTCGAAAGACGCGAATGTAGCAAAAATTGTGAAACAAAAACCCCAAGCGCAACGCACGCGGACGTTGCAATGCAGATTTATAGTACAATTTTATATCTATTTAAAAAAGAAAGGAACGTAAAACACTCGTATTCTAAAGCACCTAAACACACACACACAAACAGTCCAGCTATAAAGGCGTTAGGCGTTAATTATTAGCACGAAGGTACGAAACGCCCGTCGAACGTTTGAGAGGGAAACAGTTCCAAAAGCAGAACGGCAATCGACACACC-GGACAGCTTGGTGTGTGTTGTGTGTCCTTTCTTCATTCCATCTTAAGCATCGTAACGAACCGTTTTCTATCGCAAGTTTTGCACAGATGTTTAACATTACTACGTTTGAATGCAA-TAAGATCAGTTTACCGGATAGGAGGTGTATAAAGTTTATGCGCGGATCATTGGTAGCGTATCATCTACACACCCGGTTTGTTGTAGCAAATGAATAGTTTAACAAAAGAGAATCAATAGGAAACACAACCTCTCTTCCCTCCCCCGCAGCAGCAGTATGTGCAAGC-AAAAAAAACAGTGTTGAATGTATTCGTTTCTATATTGCGCGTATATCAACGTATATTTAACATTTATCATCGTTTAGCAAATCGCACAAAGTTAGAGTTGTTAAGTCAAGCGTACCGTTCACCACACCGCAACTGTAAAGCCACTCTACTACTACTAC-----C-ACTACTACTACTTCTTGACAGCTCTCGAATGAAGAAGAAGGCGTAGAGCTTTAGTCAGGTTAGTGAACAATTACCTA-CCAAGATTATGCTGTGCGCGATGCCGGAAGGGTGCGAATCGAAGCTAACAAATGTCAACAACACGACGGTG-CCTTTCTTT-CCCTTCGATAAGAGAATTAGCGCAT-CCCCCCTCAGCACGCCCAGCACAGACAGCAAATTGCGTGTATTAGCGAAACGCCGGAAAACCGCCAGTTCGAT-GGGGAGATTGTTACAGAAAATTAATTTCCCTTTCG-TTTGATCTACACTTCTCGCTGTGCTAAGCGTTATTGTTTGATACCCATGAAAA--AAAAACACACACACACACACACACACACACCGATTCGAATTAAGAATTCGCAATAACCGGTGGAGTAGCAAAATTCATCCCTTTTTTATCACTTATTTAATGCACTGTTGAGTGTGTATAGAGTGCATCTTGTGCAATTCGTTCATCGTCTTCGTTGTCGTCGAGCAAATGTTG]

[+] EMBL BX618517             [AACTATTCAGATGTGTTTGCTATGTT TAAAAGAACCGTTTATACAAGTAAGTATCTAGCTAAGTAAGATTTGCGATCAACATGGCACCAAAATTTAACATCGCTACGGCGAAATATGTTTAGGAACAAAACAATGCAAAA AGAAAAAAAAACAAATGATTCGATCGATAACCGAATTGGCACGGATTCGAAGCCGTGCGCCCAATTTTTGAAGCTAATTTCACTCGAAAGACGCGAATGTAGCAAAAATTGTGAAACAAAAACCCCAAGCGCAACGCACGCGGACGTTGCAATGCAGATTTATAGTACAATTTTATATCTATTTAAAAAAGAAAGGAACGTAAAACACTCGTATTCTAAAGCACCTAAACACAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL BX624211             [         GATGTGTTTGCTATGTTNTAAAAGAACCGTTTATACAAGTAAGTATCTAGCTAAGTAAGATTTGCGATCAACATGGCACCAAAATTTAACATCGCTACGGCGAAATATGTTTAGGAACAAAACAATGCAAAAGAGAAAAAAAAACAAATGATTCGATCGATAACCGAATTGGCACGGATTCGAAGCCGTGCGCCCAATTTTTGAAGCTAATTTCACTCGAAAGACGCGAATGTAGCAAAAATTGTGAAACAAAAACCCCAAGCGCAACGCACGCGGACGTTGCAATGCAGATTTATAGTACAATTTTATATCTATTTAAAAAAGAAAGGAACGTAAAACACTCGTATTCTAAAGCACCTAAACACACACACACAAACAGTCCAGCTATAAAGGCGTNANGCGTTAATTATNAGCACGANNNTACGAAACGCCCGTCGANCGTNTGAGANGGANACAGTTCCAAAAGCAGAACNGCAATCGACACACCGGGACAGCTNGGTGTGTGTNGTGTGTCNNTNCTTCATTCCATCTAANGCATCGTANCGAACCGTNTNCTATCGCAAGTTTTGCACAGATGTTTAACATTACTACGTTTGAATGCAA TAAGATCAGTTTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BX620009             [                                                                                                  CATCGCTACGGCGAAATATGTTTAGGAACAAAACAATGCAAAA AGAAAAAAAAACAAATGATTCGATCGATAACCGAATTGGCACGGATTCGAAGCCGTGCGCCCAATTTTTGAAGCTAATTTCACTCGAAAGACGCGAATGTAGCAAAAATTGTGAAACAAAAACCCCAAGCGCAACGCACGCGGACGTTGCAATGCAGATTTATAGTACAATTTTATATCTATTTAAAAAAGAAAGGAACGTAAAACACTCGTATTCTAAAGCACCTAAACACACACACACAAACAGTCCAGCTATAAAGGCGTTAGGCGTTAATTATTAGCACGAAGGTACGAAACGCCCGTCGAACGTTTGAGAGGGAAACAGTTCCAAAAGCAGAACGGCAATCGACACACC GGACAGCTTGGTGTGTGTTGTGTGTCCTTTCTTCATTCCATCTTAAGCATCGTAACGAACCGTTTTCTATCGCAAGTTTTGCACAGATGTTTAACATTACTACGTTTGAATGCAA TAAGATCAGTTTACCGGATAGGAGGTGTATAAAGTTTATGCGCGGATCATTGGTAGCGTATCATCTACACACCCGGTTTGTTGTAGCAAATGAATAGTTTAACNAAAGAGAATCAATAGGAAACACAACCTCTCTTCCCTCCCCCGCAGCAGCAGTATGTGCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AGA282923            [                                                                                                                                                                                            aaGAAGCCGTGCGCCCAATTTTTGAAGCTAATTTCACTCGAAAGACGCGAATGTAGCAAAAATTGTGAAACAAAAACCCCAAGCGCAACGCACGCGGACGTTGCAATGCAGATTTATAGTACAATTTTATATCTATTTAAAAAAGAAAGGAACGTAAAACACTCGTATTCTAAAGCACCTAAACACACACACACAAACAGTCCAGCTATAAAGGCGTTAGGCGTTAATTATTAGCACGAAGGTACGAAACGCCCGTCGAACGTTTGAGAGGGAAACAGTTCCAAAAGCAGAACGGCAATCGACACACC GGACAGCTTGGTGTGTGTTGTGTGTCCTTTCTTCATTCCATCTTAAGCATCGTAACGAACCGTTTTCTATCGCAAGTTTTGCACAGATGTTTAACATTACTACGTTTGAATGCAATTAAGATCAGTTTACCGGATAGGAGGTGTATAAAGTTTATGCGCGGATCATTGGTAGCGTATCATCTACACACCCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL BM647792             [                                                                                                                                                                                                                                                                                                                                                                               ccgctaaACACACACAAACAGTCCAGCTATAAAGGCGTAAGGCGTTAATTATTAGCACGAAGGTACGAAACGACCGTCGAACGTTTGAGAGGGAAACAGTTCCAAAAGCAGAACGGCAATCGACACACC GGACAGCTTGGTGTGTGTTGTGTGTCCTTTCTTCATTCCATCTTAAGCATCGTAACGAACCGTTTTCTATCGCAAGTTTTGCACAGATGTTTAACATTACTACGTTTGAATGCAA TAAGATCAGTTTACCGGATAGGAGGTGTATAAAGTTTATGCGCGGATCATTTGTAGCGTATCATCTACACACCCGGTTTGTTGTAGCAAATGAATAGTTTAACAAAAGAGAATCAATAGGAAACACAACCTCTCTTCCCTCCCCCGCAGCAGCAGTATGTGCAAGC AAAAAAAACAGTGTTGAATGTATTCGTTTCTATATTGCGCGTATATCAACGTATATTTAACATTTATCATCGTTTAGCAAATCGCACAAAGTTAGAGTTGTTAAGTCAAGCGTACCGTTCACCACACCGCAACTGTAAAGCCACTCTACTACTACTAC     C ACTACTACTACTTCTTGACAGCTCTCGAATGAAGAAGA   TGTAGAACTTTAGTCAGGTTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BX611428             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      AAAAGCAGAATGGCAATCGACACACC GGACAGCTTGGTGTGTGTTGTGTGTCCTTTCTTCATTCCATCTTAAGCATCGTAACGAACCGTTTTCTATCGCAAGTTTTGCACAGATGTTTAACATTACTACGTTTGAATGCAA TAAGATCAGTTTACCGGATAGGAGGTGTATAAAGTTTATGCGCGGATCATTGGTAGCGTATCATCTACACACCCGGTTTGTTGTAGCAAATGAATAGTTTAACAAAAGAGAATCAATAGGAAACACAACCTCTCTTCCCTCCCCCGCAGCAGCAGTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BX625575             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CCTTTCTTCATTCCATCTTAAGCATCGTAACGAACCGTTTTCTATCGCAAGTTTTGCACAGATGTTTAACATTACTACGTTTGAATGCAA TAAGATCAGTTTACCGGATAGGAGGTGTATAAAGTTTATGCGCGGATCATTGGTAGCGTATCATCTACACACCCGGTTTGTTGTAGCAAATGAATAGTTTAACAAAAGAGAATCAATAGGAAACACAACCTCTCTTCCCTCCCCCGCAGCAGCAGTATGTGCAAGC AAAAAAAACAGTGTTGAATGTATTCGTTTCTATATTGCGCGTATATCAACGTATATTTAACATTTATCATCGTTTAGCAAATCGCACAAAGTTAGAGTTGTTAAGTCAAGCGTACCGTTCACCACACCGCAACTGTAAAGCCACTCTACTACTACTAC     C ACTACTACTACTTCTTGACAGCTCTCGAATGAAGAAGAAGGCGTAGAGCTTTAGTCAGGTTAGTGAACAATTACCTA CCAAGATTATGCTGTGCGCGATGCCGGAAGGGTGCGAATCGAAGCTAACAAATGTCAACAACACGACGGTG CCTTTCTTT CCCTTCGATAAGAGAATTAGCGCAT CCCCCCTCAGCACGCCCAGCACAGACAGCAAATTGCGTGTATTAGCGAAACGCCGGAAAACCGCCAGTTCGATGGGGGAGATTGNTACAGAAAATTAATTTCCCTTTCGTTTTGATCTACACTTCTCGCTGNGCTAAGCGTTATTGTTT                                                                                                                                                                                              ]
[+] EMBL BM648636             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ccgGTTTAACATTACTACGTTTGAATGCAA TAAGATCAGTTTACCGGATAGGAGGTGTATAAAGTTTATGCGCGGATCATTTGTAGCGTATCATCTACACACCCGGTTTGTTGTAGCAAATGAATAGTTTAACAAAAGAGAATCAATAGGAAACACAACCTCTCTTCCCTCCCCCGCAGCAGCAGTATGTGCAAGCAAAAAAAAACAGTGTTGAATGTATTCGTTTCTATATTGCGCGTATATCAACGTATATTTAACGTTTATCATCGTTTAGCAAATCGCACAAAGTTAGAGTTGTTAAGTCAAGCGTACCGTTCACCACACCGCAACTGTAAAGCCACTCTACTACTACTACTACTACTACTACTACTACTTCTTGATAGCTCTCGAATGAAGAAGAAGGCGTAGAGCTTTAGTCAGGTTAGTGAACAATTACCTA CCAAGATTATGCTGTGCGCGATGCCGGAAGGGTGCGAATCGAAGCCAACAAATGTCAACAACACGACGGTG CCTTTCTTT CCCTTCGATAAGAGAATTAGCGCAT CCCCCCTCAGCACGCCCAGCACAGACAGCAAATTGCGTGTATTAGCGAAACGCCGGAAAACCGTCAGTTCGAT GGAGAGATTGTTACAGA                                                                                                                                                                                                                                                        ]
[-] EMBL AGA281310            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CTCCCCCGCAGCAGCAGTATGTGCAAGCAAAAAAAAACAGTGTTGAATGTATTCGTTTCTATATTGCGCGTATATCAACGTATATTTAACATTTATCATCGTTTAGCAAATCGCACAAAGTTAGAGTTGTTAAGTCAAGCGTACCGTTCACCACACCGCAACTGTAAAGCCACTCTACTACTACTAC     C ACTACTACTACTTCTTGACAGCTCTCGAATGAAGAAGAAGGCGTAGAGCTTTAGTCAGGTTAGTGAACAATTACCTACCCAAGATTATGCTGTGCGCGATGCCGGAAGGGTGCGAATCGAAGCTAACAAATGTCAACAACACGACGGTGCCCTTTCTTTCCCCTTCGATAAGAGAATTAGCGCATCCCCCCCTCAGCACGCCCAGCACAGACAGCAAATTGCGTGTATTAGCGAAACGCCGGAAAACCGCCAGTTCGAT GGGGAGATTGTTACAGAAAATTAATTTCCCTTTCG TTTGATCTACACTTCTCGCTGTGCTAAGCGTTATTGTTTGATACCCATGAAAA  AAAAA                                                                                                                                                                         ]
[+] EMBL BM624538             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ccgATTCGTTTCTATATTGCGCGTATATCAACGTATATTTAACATTTATCATCGTTTAGCAAATCGCACAAAGTTAGAGTTGTTAAGTCAAGCGTACCGTTCACCACACCGCAACTGTAAAGCCACTCTACTACTACTAC     T ACTACTACTACTTCTTGATAGCTCTCGAATGAAGAAGAAGATGTAGAACTTTAGTCAGGTTAGTGAACAATTACCTA CCAAGATAATGCTGTGCGCGATGCCGGAAGGGTGCGAATCGAAGCCAACAAATGTCAACAACACGACGGTG CCTTTCTTT CCCTTCGATAAGAGAATTAGCGCAT CCACCCGAAGCACGCCCAGCACAGACAGTATA GGCGTGCATTAGCGAAACGCCGGAAAACCGTCAGTTCGAT GGAGAGATTGTTACAGAAAATTAATTTCCCTTTCG TTTGATCGACACTTCTCGCTGTGCTAAGCGTTATTGTTTGATACCCATGAAAAGGAAAAACACACACACACACACACACACACACCGATTCGAATTAAGAATTCGCAATAACCGGTGGAGTAGCAAAATTCATCCCTTTTTTATCACTTATTTAATGCACTGTTGAGTGTGTATAGAGTGCATCTTGTGCAATTCGTTCATCGTCTTCGTTGTCGTCGAGCAAATGTTG]


>consensus_8852#0 AACTATTCAGATGTGTTTGCTATGTTTAAAAGAACCGTTTATACAAGTAAGTATCTAGCT AAGTAAGATTTGCGATCAACATGGCACCAAAATTTAACATCGCTACGGCGAAATATGTTT AGGAACAAAACAATGCAAAAAGAAAAAAAAACAAATGATTCGATCGATAACCGAATTGGC ACGGATTCGAAGCCGTGCGCCCAATTTTTGAAGCTAATTTCACTCGAAAGACGCGAATGT AGCAAAAATTGTGAAACAAAAACCCCAAGCGCAACGCACGCGGACGTTGCAATGCAGATT TATAGTACAATTTTATATCTATTTAAAAAAGAAAGGAACGTAAAACACTCGTATTCTAAA GCACCTAAACACACACACACAAACAGTCCAGCTATAAAGGCGTTAGGCGTTAATTATTAG CACGAAGGTACGAAACGCCCGTCGAACGTTTGAGAGGGAAACAGTTCCAAAAGCAGAACG GCAATCGACACACCGGACAGCTTGGTGTGTGTTGTGTGTCCTTTCTTCATTCCATCTTAA GCATCGTAACGAACCGTTTTCTATCGCAAGTTTTGCACAGATGTTTAACATTACTACGTT TGAATGCAATAAGATCAGTTTACCGGATAGGAGGTGTATAAAGTTTATGCGCGGATCATT GGTAGCGTATCATCTACACACCCGGTTTGTTGTAGCAAATGAATAGTTTAACAAAAGAGA ATCAATAGGAAACACAACCTCTCTTCCCTCCCCCGCAGCAGCAGTATGTGCAAGCAAAAA AAACAGTGTTGAATGTATTCGTTTCTATATTGCGCGTATATCAACGTATATTTAACATTT ATCATCGTTTAGCAAATCGCACAAAGTTAGAGTTGTTAAGTCAAGCGTACCGTTCACCAC ACCGCAACTGTAAAGCCACTCTACTACTACTACCACTACTACTACTTCTTGACAGCTCTC GAATGAAGAAGAAGGCGTAGAGCTTTAGTCAGGTTAGTGAACAATTACCTACCAAGATTA TGCTGTGCGCGATGCCGGAAGGGTGCGAATCGAAGCTAACAAATGTCAACAACACGACGG TGCCTTTCTTTCCCTTCGATAAGAGAATTAGCGCATCCCCCCTCAGCACGCCCAGCACAG ACAGCAAATTGCGTGTATTAGCGAAACGCCGGAAAACCGCCAGTTCGATGGGGAGATTGT TACAGAAAATTAATTTCCCTTTCGTTTGATCTACACTTCTCGCTGTGCTAAGCGTTATTG TTTGATACCCATGAAAAAAAAACACACACACACACACACACACACACCGATTCGAATTAA GAATTCGCAATAACCGGTGGAGTAGCAAAATTCATCCCTTTTTTATCACTTATTTAATGC ACTGTTGAGTGTGTATAGAGTGCATCTTGTGCAATTCGTTCATCGTCTTCGTTGTCGTCG AGCAAATGTTG



consensusID : consensus_8852#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 687
fasta sequence
                              [CCGCCCACGCGTCCGCCCACGCGTCCGAAGGGACGGCAGCTAGTCTAACATGGAGAAACTGCTCCGAACGGTGGCAGAAGCAGTGTATCATCATACCGGCCCCCCCAAAGGGACAGAGTGGGACCTGAGGGGGGGGCAATAATGTTTGCAATTACGGGCGCTATTCGTCTCATTCGTTTCTTCCACATTTAGCGTGAAATAAGCGCAAACCGATTCGGAAACTATTCAGATGTGTTTGCTATGTTTAAAATAACCGTTTATACAAGTAAGTTTCTAGTGAAGTAAGATTTGCGATCAACATGGCACCAAAATTTAACATCGCCACGGCGAAATATGTTTAGGAACAAAAAAAAAACAAACAATTCGATCGATAACCGAAATGGCACGGATTCGAAGCCGTGCGCACAATTTTTGAAGCTGATTTCACTCGAAAGACGCGAATGAAGCAAAAATTGTGAAACAAAAACCCCAGGCGCAACGCACGCGGACGTTGCAATGCAGATTTATAGTACAATTTTATATCTATTTAAAAAAAAAAGAGAGGAACGTAAAACACTCGTATTCTAAAGCACCTAAACACACACACAAACAGTCCAGCTATAAAGGCGTGAGGCGTTAATTATTAGCACGAAGGTACGAAACGACCGTCGAACGTTTGAGAGGGAAACAGTTCCAAAAGCAGAACGG]

[+] EMBL BM602694             [CCGCCCACGCGTCCGCCCACGCGTCCGAAGGGACGGCAGCTAGTCTAACATGGAGAAACTGCTCCGAACGGTGGCAGAAGCAGTGTATCATCATACCGGCCCCCCCAAAGGGACAGAGTGGGACCTGAGGGGGGGGCAATAATGTTTGCAATTACGGGCGCTATTCGTCTCATTCGTTTCTTCCACATTTAGCGTGAAATAAGCGCAAACCGATTCGGAAACTATTCAGATGTGTTTGCTATGTTTAAAATAACCGTTTATACAAGTAAGTTTCTAGTGAAGTAAGATTTGCGATCAACATGGCACCAAAATTTAACATCGCCACGGCGAAATATGTTTAGGAACAAAAAAAAAACAAACAATTCGATCGATAACCGAAATGGCACGGATTCGAAGCCGTGCGCACAATTTTTGAAGCTGATTTCACTCGAAAGACGCGAATGAAGCAAAAATTGTGAAACAAAAACCCCAGGCGCAACGCACGCGGACGTTGCAATGCAGATTTATAGTACAATTTTATATCTATTTAAAAAAAAAAGAGAGGAACGTAAAACACTCGTATTCTAAAGCACCTAAACACACACACAAACAGTCCAGCTATAAAGGCGTGAGGCGTTAATTATTAGCACGAAGGTACGAAACGACCGTCGAACGTTTGAGAGGGAAACAGTTCCAAAAGCAGAACGG]


>consensus_8852#1 CCGCCCACGCGTCCGCCCACGCGTCCGAAGGGACGGCAGCTAGTCTAACATGGAGAAACT GCTCCGAACGGTGGCAGAAGCAGTGTATCATCATACCGGCCCCCCCAAAGGGACAGAGTG GGACCTGAGGGGGGGGCAATAATGTTTGCAATTACGGGCGCTATTCGTCTCATTCGTTTC TTCCACATTTAGCGTGAAATAAGCGCAAACCGATTCGGAAACTATTCAGATGTGTTTGCT ATGTTTAAAATAACCGTTTATACAAGTAAGTTTCTAGTGAAGTAAGATTTGCGATCAACA TGGCACCAAAATTTAACATCGCCACGGCGAAATATGTTTAGGAACAAAAAAAAAACAAAC AATTCGATCGATAACCGAAATGGCACGGATTCGAAGCCGTGCGCACAATTTTTGAAGCTG ATTTCACTCGAAAGACGCGAATGAAGCAAAAATTGTGAAACAAAAACCCCAGGCGCAACG CACGCGGACGTTGCAATGCAGATTTATAGTACAATTTTATATCTATTTAAAAAAAAAAGA GAGGAACGTAAAACACTCGTATTCTAAAGCACCTAAACACACACACAAACAGTCCAGCTA TAAAGGCGTGAGGCGTTAATTATTAGCACGAAGGTACGAAACGACCGTCGAACGTTTGAG AGGGAAACAGTTCCAAAAGCAGAACGG



consensusID : consensus_8852#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 435
fasta sequence
                              [CGAGGCAGAATCGGCACGANGGCACAACCTCTCTTCCCTCCCCCGCAGCAGCAGTATGTGCAAGCAAAAAAAAACAGTGTTGAATGTATTCGTTTCTATATTGCGCGTATATCAACGGTATATTTAACATTTATCATCGTTTAGCAAATCGCACAAAGGTTAGGAGGTTGTTAAGGTCGAAGCGGTACCGGTTCACCGACACGCGGGAGACGTGGTAAAGCGCACGTCGTTAGTNACATTAACTACCCACNTACGCTANCTNAGCNTGTNCGTGTTGTAACAAGGCGTCCTCGNAGAGTTGAGAGGGAAGGAACGGGGCGGNTAAGAAGACCTTTTAGGCTCANGGGCTATAGGTNGGAAGACAANTTTAGCCNTTAGCACANAGGGAGTTAAATAGGNCGTGGGTGGCCGCGAATGACCCAGGGAAAGGNGTTG]

[+] EMBL BX469865             [CGAGGCAGAATCGGCACGANGGCACAACCTCTCTTCCCTCCCCCGCAGCAGCAGTATGTGCAAGCAAAAAAAAACAGTGTTGAATGTATTCGTTTCTATATTGCGCGTATATCAACGGTATATTTAACATTTATCATCGTTTAGCAAATCGCACAAAGGTTAGGAGGTTGTTAAGGTCGAAGCGGTACCGGTTCACCGACACGCGGGAGACGTGGTAAAGCGCACGTCGTTAGTNACATTAACTACCCACNTACGCTANCTNAGCNTGTNCGTGTTGTAACAAGGCGTCCTCGNAGAGTTGAGAGGGAAGGAACGGGGCGGNTAAGAAGACCTTTTAGGCTCANGGGCTATAGGTNGGAAGACAANTTTAGCCNTTAGCACANAGGGAGTTAAATAGGNCGTGGGTGGCCGCGAATGACCCAGGGAAAGGNGTTG]


>consensus_8852#2 CGAGGCAGAATCGGCACGANGGCACAACCTCTCTTCCCTCCCCCGCAGCAGCAGTATGTG CAAGCAAAAAAAAACAGTGTTGAATGTATTCGTTTCTATATTGCGCGTATATCAACGGTA TATTTAACATTTATCATCGTTTAGCAAATCGCACAAAGGTTAGGAGGTTGTTAAGGTCGA AGCGGTACCGGTTCACCGACACGCGGGAGACGTGGTAAAGCGCACGTCGTTAGTNACATT AACTACCCACNTACGCTANCTNAGCNTGTNCGTGTTGTAACAAGGCGTCCTCGNAGAGTT GAGAGGGAAGGAACGGGGCGGNTAAGAAGACCTTTTAGGCTCANGGGCTATAGGTNGGAA GACAANTTTAGCCNTTAGCACANAGGGAGTTAAATAGGNCGTGGGTGGCCGCGAATGACC CAGGGAAAGGNGTTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8852#0      ------------------------------------------------------------
consensus_8852#1      CCGCCCACGCGTCCGCCCACGCGTCCGAAGGGACGGCAGCTAGTCTAACATGGAGAAACT 60
consensus_8852#2      ------------------------------------------------------------
                                                                                  

consensus_8852#0      ------------------------------------------------------------
consensus_8852#1      GCTCCGAACGGTGGCAGAAGCAGTGTATCATCATACCGGCCCCCCCAAAGGGACAGAGTG 120
consensus_8852#2      ------------------------------------------------------------
                                                                                  

consensus_8852#0      ------------------------------------------------------------
consensus_8852#1      GGACCTGAGGGGGGGGCAATAATGTTTGCAATTACGGGCGCTATTCGTCTCATTCGTTTC 180
consensus_8852#2      ------------------------------------------------------------
                                                                                  

consensus_8852#0      ---------------------------------------AACTATTCAGATGTGTTTGCT 21
consensus_8852#1      TTCCACATTTAGCGTGAAATAAGCGCAAACCGATTCGGAAACTATTCAGATGTGTTTGCT 240
consensus_8852#2      -------------------CGAGGCAGAATCGGCACGANGGCA---CAACCTCTCTTCCC 38
                                                               *    **       ** * 

consensus_8852#0      ATGTTTAAAAGAACCGTTTATACAAGTAAGTATCTAGCTAAGTAAGATTTGCGATCAACA 81
consensus_8852#1      ATGTTTAAAATAACCGTTTATACAAGTAAGTTTCTAGTGAAGTAAGATTTGCGATCAACA 300
consensus_8852#2      TCCCCCGCAGCAGCAGTATGTGCAAGCAAA---------AAAAAACAGTGTTGAATGTAT 89
                              *  * * ** * * **** **          **  ** * *   **      

consensus_8852#0      TGGCACCAAAATTTAACATCGCTACGGCGAAATATGTTTAGGAACAAAACAATGCAAAAA 141
consensus_8852#1      TGGCACCAAAATTTAACATCGCCACGGCGAAATATGTTTAGGAACAAAA----------- 349
consensus_8852#2      TCGTTTCTATATTGCGCGT-ATATCAACGG--TATATTTAACATTTATC----------- 135
                      * *   * * ***   * *     *  **   *** ****  *   *             

consensus_8852#0      GAAAAAAAAACAAATGATTCGATCGATAACCGAATTGGCACGGAT-TCGAAGCCGTGCGC 200
consensus_8852#1      ----AAAAAACAAACAATTCGATCGATAACCGAAATGGCACGGAT-TCGAAGCCGTGCGC 404
consensus_8852#2      -----ATCGTTTAGCAAATCGCACAAAGGTTAGGAGGTTGTTAAGGTCGAAGCGGTAC-- 188
                           *      *   * ***  * *          *      *  ******* ** *  

consensus_8852#0      CCAATTTTTGAAGCTAATTTCACTCGAAAGACGCGAATGTAGCAAAAATTGTGA--AACA 258
consensus_8852#1      ACAATTTTTGAAGCTGATTTCACTCGAAAGACGCGAATGAAGCAAAAATTGTGA--AACA 462
consensus_8852#2      -CGGTTC-----ACCGA---CACGCGGGAGACGTGG-TAAAGCGCACGTCGTTAGTNACA 238
                       *  **       *  *   *** **  ***** *  *  ***  *  * ** *   ***

consensus_8852#0      AAAACCCCAAGCGCAACGCACGCGGACGTTGCAATGCAGATTTATAGTACAATTTTATAT 318
consensus_8852#1      AAAACCCCAGGCGCAACGCACGCGGACGTTGCAATGCAGATTTATAGTACAATTTTATAT 522
consensus_8852#2      TTAACTACCCACNTACGCTANCTNAGCNTGTNCGTGTTGTAACAAGGCGTCCTCGNAGAG 298
                        ***  *   *  *    *      * *     **  *    *  *     *   * * 

consensus_8852#0      CTATTTAAAAAAGAAAG----GAACGTAAAACACTCGTATTCTAAAGCACC-TAAACACA 373
consensus_8852#1      CTATTTAAAAAAAAAAGAGAGGAACGTAAAACACTCGTATTCTAAAGCACC-TAAACACA 581
consensus_8852#2      TTGAGAGGGAAGGAACGGGGCGGNTAAGAAGACCTTTTAGGCTCANGGGCTATAGGTNGG 358
                       *       **  ** *    *      **   **  **  ** * *  *  **      

consensus_8852#0      CACACACAAACAGTCCAGCTATAAAGGCGTTAGGCGTTAATTATTAGCACGAAGGTACGA 433
consensus_8852#1      CACACA--AACAGTCCAGCTATAAAGGCGTGAGGCGTTAATTATTAGCACGAAGGTACGA 639
consensus_8852#2      AAGACA-----ANTTTAGCCNTTAGCACANAGGGAGTTAAA---TAGGNCGTGGGT---- 406
                       * ***     * *  ***  * *   *    ** *****    ***  **  ***    

consensus_8852#0      AACGCCCGTCGAACGTTTGAGAGGGAAACAGTTCCAAAAGCAGAACGGCAATCGACACAC 493
consensus_8852#1      AACGACCGTCGAACGTTTGAGAGGGAAACAGTTCCAAAAGCAGAACGG------------ 687
consensus_8852#2      ---GGCCG-CGAATGACCCAG-GGAAAGGNGTTG-------------------------- 435
                         * *** **** *    ** ** **   ***                           

consensus_8852#0      CGGACAGCTTGGTGTGTGTTGTGTGTCCTTTCTTCATTCCATCTTAAGCATCGTAACGAA 553
consensus_8852#1      ------------------------------------------------------------
consensus_8852#2      ------------------------------------------------------------
                                                                                  

consensus_8852#0      CCGTTTTCTATCGCAAGTTTTGCACAGATGTTTAACATTACTACGTTTGAATGCAATAAG 613
consensus_8852#1      ------------------------------------------------------------
consensus_8852#2      ------------------------------------------------------------
                                                                                  

consensus_8852#0      ATCAGTTTACCGGATAGGAGGTGTATAAAGTTTATGCGCGGATCATTGGTAGCGTATCAT 673
consensus_8852#1      ------------------------------------------------------------
consensus_8852#2      ------------------------------------------------------------
                                                                                  

consensus_8852#0      CTACACACCCGGTTTGTTGTAGCAAATGAATAGTTTAACAAAAGAGAATCAATAGGAAAC 733
consensus_8852#1      ------------------------------------------------------------
consensus_8852#2      ------------------------------------------------------------
                                                                                  

consensus_8852#0      ACAACCTCTCTTCCCTCCCCCGCAGCAGCAGTATGTGCAAGCAAAAAAAACAGTGTTGAA 793
consensus_8852#1      ------------------------------------------------------------
consensus_8852#2      ------------------------------------------------------------
                                                                                  

consensus_8852#0      TGTATTCGTTTCTATATTGCGCGTATATCAACGTATATTTAACATTTATCATCGTTTAGC 853
consensus_8852#1      ------------------------------------------------------------
consensus_8852#2      ------------------------------------------------------------
                                                                                  

consensus_8852#0      AAATCGCACAAAGTTAGAGTTGTTAAGTCAAGCGTACCGTTCACCACACCGCAACTGTAA 913
consensus_8852#1      ------------------------------------------------------------
consensus_8852#2      ------------------------------------------------------------
                                                                                  

consensus_8852#0      AGCCACTCTACTACTACTACCACTACTACTACTTCTTGACAGCTCTCGAATGAAGAAGAA 973
consensus_8852#1      ------------------------------------------------------------
consensus_8852#2      ------------------------------------------------------------
                                                                                  

consensus_8852#0      GGCGTAGAGCTTTAGTCAGGTTAGTGAACAATTACCTACCAAGATTATGCTGTGCGCGAT 1033
consensus_8852#1      ------------------------------------------------------------
consensus_8852#2      ------------------------------------------------------------
                                                                                  

consensus_8852#0      GCCGGAAGGGTGCGAATCGAAGCTAACAAATGTCAACAACACGACGGTGCCTTTCTTTCC 1093
consensus_8852#1      ------------------------------------------------------------
consensus_8852#2      ------------------------------------------------------------
                                                                                  

consensus_8852#0      CTTCGATAAGAGAATTAGCGCATCCCCCCTCAGCACGCCCAGCACAGACAGCAAATTGCG 1153
consensus_8852#1      ------------------------------------------------------------
consensus_8852#2      ------------------------------------------------------------
                                                                                  

consensus_8852#0      TGTATTAGCGAAACGCCGGAAAACCGCCAGTTCGATGGGGAGATTGTTACAGAAAATTAA 1213
consensus_8852#1      ------------------------------------------------------------
consensus_8852#2      ------------------------------------------------------------
                                                                                  

consensus_8852#0      TTTCCCTTTCGTTTGATCTACACTTCTCGCTGTGCTAAGCGTTATTGTTTGATACCCATG 1273
consensus_8852#1      ------------------------------------------------------------
consensus_8852#2      ------------------------------------------------------------
                                                                                  

consensus_8852#0      AAAAAAAAACACACACACACACACACACACACACCGATTCGAATTAAGAATTCGCAATAA 1333
consensus_8852#1      ------------------------------------------------------------
consensus_8852#2      ------------------------------------------------------------
                                                                                  

consensus_8852#0      CCGGTGGAGTAGCAAAATTCATCCCTTTTTTATCACTTATTTAATGCACTGTTGAGTGTG 1393
consensus_8852#1      ------------------------------------------------------------
consensus_8852#2      ------------------------------------------------------------
                                                                                  

consensus_8852#0      TATAGAGTGCATCTTGTGCAATTCGTTCATCGTCTTCGTTGTCGTCGAGCAAATGTTG 1451
consensus_8852#1      ----------------------------------------------------------
consensus_8852#2      ----------------------------------------------------------
                                                                                




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)