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Anopheles gambiae
cluster # 8874 cluster # 8874       Sequences # 12       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8874#0 length = 1134 sequences # 9  
consensus_8874#1 length = 826 sequences # 2  
consensus_8874#2 length = 826 sequences # 1  

consensusID : consensus_8874#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 1134
fasta sequence
                              [GCCAGAATCGCACGAGGGTGTACTTGCCCAGAACGCTAGAACACCCCGCACAGCGCGGTCACGAGTGAGATGTTCTTACCCATCGTTGTGATAACGTTATCTGCGCTTTTGCACGGTGCTACCGCCAGATGTCGCGTGTACTTGAACGGGAATCTCACCCAACCCCACCCGCCGTTGTTTATAAAGCAGTCCGGCAACAACCAGCAGTATGACCTTTTGCAGCCTACGGGATCGTTTTTCGAATGGCGTCAGGCGGATTCAATTATATTTGCATGTTCGCCAGCTAAAAACGTTCTCAACAACA-CTCGCAACGGAAAAGCAACTTTTTCATGCTTCGAAGGACAAGACTTAACTCTAAACGG-CAATTTAAATCGAATCGCTATCAATGAAATCAGTT-GTAGCTCAGCCGTT-TCGGGAGCAATAAAACCTTCGAATGTGTCCTGTGG-CAATA-AAGCAGGTCGGCTGTACAACATAGGCTTCGAAGTGGAAGGCACAGAATTCATCAACT-ACTTTCAAGTGTGCTACGATTTAACGAAATCGTCCGCTCTCTACAG-TCAGCATCAAATTCTGGGGAAAGTTATAAGCCAAGCACAAATCAACAACAACCGACCATCGTTCAAACTTGGTGGATTAAAATCGACCGTGCGCTTAGCTTCCGTTTACACTCAAAGACATCAGCTAGAGCAC-TTTTCCACAATTCTTGGCTCTGCGGAGCATGCCAGCAAGTTTATTGATTCAACCTCGTATCTGGCCAAGGGTCATCTGACGCCAGATGGTGACGCAGTGCTTGATAGTTGGGCTGGAGCAACTTACTTCTTTATAAATGCTGTTCCGGAATGGCAGGTTGTAAACGGTGGCAACTGGTTGCGTGTAGAGAATGCAGCTCGTAAAGTGGCTACACAGTTGAATGATACCGTAGACGTATACAGCGGTGTGTA-CGACGTCCTCCAGCTGCCGAACAAGAAAGGTAATCTGGTTTCGTTGAGTTTGGGCGATGACGGTGTTGTACCAGTTCCAAAATGGCTATGGAAGGCAGTAGTTCATCGGCCCAGCAATAAGGGTATTGTCCTCATCACACTAAACAATCCATTTGCCACCAGCGCAGAAACTTTATGCGAANACATATGCTCACGA]

[+] EMBL AL696797             [GCCAGAATCGCACGAGGGTGTACTTGCCCAGAACGCTAGAACACCCCGCACAGCGCGGTCACGAGTGAGATGTTCTTACCCATCGTTGTGATAACGTTATCTGCGCTTTTGCACGGTGCTACCG CAGATGTCGCGTGTACTTGAACGGGAATCTCACCCAA CCCA CCGCCGTTGTTTATAAAGCAGTCCGGCAACAACCAGCAGTATGACCTTTTGCAGCCTACGGGATCGTTTTTTGAATGGCGTCAGGCGGATTCAATTATATTTGCATGTTCGCCAGCTAAAAACGTTCTCAACAACAGCTCGCAACGGAAAAGCAACTTTTTCATGCTTCNAAGGACAAGACTTAACTCTAAACGGCCAATTTAAATCGAATCGCTATCAATGAAATCAGTTAGTAGCTCAGCCGTTATCGGGAGCAATAAAACCTTCGAATGTGTCCTGTGGCCAATACAAGCAGGTCGGCTGTACAACATAGGCTTCGAAGTGGAAGGCACNGAATTCATCAACT ACTTTCAAGTGTGCTACG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL BM600464             [                 ccggACTTGCCCAGAACGCTAGAACACCCCGCACAGCGCGGTCACGAGTGAGATGTTCTTACCCATCGTTGTGATAACGTTATCTGCGCTTTTGCACGGTGCTACCGCCAGATGTCGCGTGTACTTGAACGGGAATCTCACCCAACCCCACCCGCCGTTGTTTATAAAGCAGTCCGGCAACAACCAGCAGTATGACCTTTTGCAGCCTACGGGACCGTTTTTCGAATGGCGTCAGGCGGATTCAATTATATTTGCATGTTCGCCAGCTAAAAACGTTCTCAACAACA CTCGCAACGGAAAAGCAACTTTTTCATGCTTCGAAGGACAAGACTTAACTCTAAACGA CAATTTAAATCGAATCGCTTTCAATGAAATCAGTT GTAGCTCAGCCGTT TCGGGAGCAATAAAACCTTCGAATGTGTCCTGTGG CAATA AAGCAGGTCGGCTATACAACATAGGCTTCGAAGTGGAAGGCACAGAATTCATCAACT ACTTTCAAGTGTGCTACGATTTAACGAAATCGTCCGCTCTCTACAG TCAGCATCAAATTCTGGGGAAAGTTATAAGCCgtga                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BX622859             [                                        ACACCCCGCACAGCGCGGTCACGAGTGAGATGTTCTTACCCATCGTTGTGATAACGTTATCTGCGCTTTTGCACGGTGCTACCGCCAGATGTCGCGTGTACTTGAACGGGAATCTCACCCAACCCCACCCGCCGTTGTTTATAAAGCAGTCCGGCAACAACCAGCAGTATGACCTTTTGCAGCCTACGGGATCGTTTTTTGAATGGCGTCAGGCGGATTCAATTATATTTGCATGTTCGCCAGCTAAAAACGTTCTCAACAACA CTCGCAACGGAAAAGCAACTTTTTCATGCTTCGAAGGACAAGACTTAACTCTAAACGG CAATTTAAATCGAATCGCTATCAATGAAATCAGTT GTAGCTCAGCCGTT TCGGGAGCAATAAAACCTTCGAATGTGTCCTGTGG CAATA AAGCAGGTCGGCTGTACAACATAGGCTTCGAAGTGGAAGGCACAGAATTCATCAACT ACTTTCAAGTGTGCTACGATTTAACGAAATCGTCCGCTCTCTACAG TCAGCATCAAATTCTGGGGAAAGTTATAAGCCAAGCACAAATCAACAACAACCGACCGTCGTTCAAACTTGGTGGATTAAAATCGACCGTGCGCTTAGCTTCCGTTTACACTCAAAGACATCAGCTAGAGCAC TTTTCCACAATTCTTGGCTCTGCGGAGCATGCCAGCAAGTTTATTGATTCAACC                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BM646430             [                                             CCGCACAGCGCGGTCACGAGTGAGATGTTCTTACCCATAGTTGTGATAACGTTATCTGCGCTTTTGCACGGTGCTACCGCCAGATGTCGCGTGTACTTGAACGGGAATCTCACCCAACCTCACCCGCCGTTGTTTATAAAGCAATACGGTAACAACCAGCAGTATGACCTTTTGCAGCCTACGGGACCGTTTTTCGAATGGCGTCAGGCGGATTCAATTATATTTGCATGTTCACCAGCTAAAAACGTCCTCAACAACA CTCGCAACGGAAAAGCAACTTTTTCATGCTTCGAAGGACAAGACTTAACTCTAAACGA CAATTTAAATCGAATCGCTTTCAATGAAATCAGTT GTAGCTCAGCCGTT TCGGGAGCAATAAAACCTTCGAATGTGTCCTGTGG CAATA AAGCAGGTCGGCTGTACAACATAGGCTTCGAAGTGGAAGGCATAGAATTCATCAACT ACTTTCAAGTGTGCTACGATTTAACGAAATCGTCCGCTCTCTACAG TCAGCATGAAATTCTGGGGAAAGTTATAAGCCAAGCACAAATCAACAACAACCGACCATCGTTCAAACTTGATGGATTAAAATCGACCGTGCGCTTAGCTTCCGTTTACACTCAAAGACATCAGCTAGAGCACTTTTTCCACAATTCTTGGCTCg                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BX604742             [                                                             CGAGTGAGATGTTCTTACCCATCTTTGTGATAACGTTATCTGCGCTTTTGCACGGTGCTACCGCCAGATGTCGCGTGTACTTGAACGGGAATCTCACCCAACCCCACCCGCCGTTGTTTATAAAGCAGTCCGGCAACAACCAGCAGTATGACCTTTTGCAGCCTACGGGATCGTTTTTCGAATGGCGTCAGGCGGATTCAATTATATTTGCATGTTCGCCAGCTAAAAACGTTCTCAACAACA CTCGCAACGGAAAAGCAACTTTTTCATGCTTCGAAGGACAAGACTTAACTCTAAACGG CAATTTAAATCGAATCGCTATCAATGAAATCAGTT GTAGCTCAGCCGTT TCGGGAGCAATAAAACCTTCGAATGTGTCCTGTGG CAATA AAGCAGGTCGGCTGTACAACATAGGCTTCGAAGTGGAAGGCACAGAATTCATCAACT ACTTTCAAGTGTGCTACGATTTAACGAAATCGTCCGCTCTCTACAG TCAGCATCAAATTCTGGGGAAAGTTATAAGCCAAGCACAAATCAACAACAACCGACCATCGTTCAAACTTGGTGGATTAAAATCGACCGTGCGCTTAGCTTCCGTTTACACTCAAAGACATCAGCTAGAGCAC TTTTCCACAATTCTTGGCTCTGCGGAGCATGCCAGCAAGTTTATTGATTCAACCT                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BX611235             [                                                                GTGAGATGTTCTTACCCATCGTTGTGATAACGTTATCTGCGCTTTTGCACGGTGCTACCGCCAGATGTCGCGTGTACTTGAACGGGAATCTCACCCAACCCCACCCGCCGTTGTTTATAAAGCAGTCCGGCAACAACCAGCAGTATGACCTTTTGCAGCCTACGGGATCGTTTTTCGAATGGCGTCAGGCGGATTCAATTATATTTGCATGTTCGCCAGCTAAAAACGTTCTCAACAACA CTCGCAACGGAAAAGCAACTTTTTCATGCTTCGAAGGACAAGACTTAACTCTAAACGG CAATTTAAATCGAATCGCTATCAATGAAATCAGTT GTAGCTCAGCCGTT TCGGGAGCAATAAAACCTTCGAATGTGTCCTGTGG CAATA AAGCAGGTCGGCTGTACAACATAGGCTTCGAAGTGGAAGGCACAGAATTCATCAACT ACTTTCAAGTGTGCTACGATTTAACGAAATCGTCCGCTCTCTACAG TCAGCATCAAATTCTGGGGAAAGTTATAAGCCAAGCACAAATCAACAACAACCGACCATCGTTCAAACTTGGTGGATTAAAATCGACCGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BX602583             [                                                                                                                                                                    CCACCCGCCGTTG TTATAAAGCAGTCCGGCAACAACCAGCATTATGACCTTTTGCAGCCT CGGGATCGTTTTTCGAATGGCGTCAGGCGGATTCAATTATATTTGCATGTTCGCCAGCTAAAAACGTTCTCAACAACA CTCGCAACGGAAAAGCAACTTTTTCATGCTTCGAAGGACAAGACTTAACTCTAAACGG CAATTTAAATCGAATCGCTATCAATGAAATCAGTT GTAGCTCAGCCGTT TCGGGAGCAATAAAACCTTCGAATGTGTCCTGTGG CAATA AAGCAGGTCGGCTGTACAACATAGGCTTCGAAGTGGAAGGCACAGAATTCATCAACT ACTTTCAAGTGTGCTACGATTTAACGAAATCGTCCGCTCTCTACAG TCAGCATCAAATTCTGGGGAAAGTTATAAGCCAAGCACAAATCAACAACAACCGACCATCGTTCAAACTTGGTGGATTAAAATCGACCGTGCGCTTAGCTTCCGTTTACACTCAAAGACATCAGCTAGAGCAC TTTTCCACAATTCTTGGCTCTG                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BX621523             [                                                                                                                                                                                                                                                                                                           CAACA CTCGCAACGGAAAAGCAACTTTTTCATGCTTCGAAGGACAAGACTTAACTCTAAACGG CAATTTAAATCGAATCGCTATCAATGAAATCAGTT GTAGCTCAGCCGTT TCGGGAGCAATAAAACCTTCGAATGTGTCCTGTGG CAATA AAGCAGGTCGGCTGTACAACATAGGCTTCGAAGTGGAAGGCACAGAATTCATCAACT ACTTTCAAGTGTGCTACGATTTAACGAAATCGTCCGCTCTCTACAG TCAGCATCAAATTCTGGGGAAAGTTATAAGCCAAGCACAAATCAACAACAACCGACCGTCGTTCAAACTTGGTGGATTAAAATCGACCGTGCGCTTAGCTTCCGTTTACACTCAAAGACATCAGCTAGAGCAC TTTTCCACAATTCTTGGCTCTGCGGAGCATGCCAGCAAGTTTATTGATTCAACCTCGTATCTGGCCAAGGGTCATCTGACGCCAGATGGTGACGCAGTGCTTGATAGTTGGGCTGGAGCAACTTACTTCTTTATAAATGCTGTTCCGGAATGGCAGGTTGTAAACGGTGGCAACTGGTTGCGTGTAGAGAATGCAGCTCGTAAAGTGGCTACACAGTTGAATGATACCGTAGACGTATACAGCGGTGTGTA CGACGTCCTCCAGCTGCCGAACAAGAAAGGTAATCTGGTTTCGTTGAGTTTGGGCGATGACGGTGTTGTACCAGTTCCAAAATGGCTATGGAAGGCAGTAGTTCATCGGCCCAGCAATAAGGGTATTGTCCTCATCACACTAAACAATCCATTTGCCACCAGCGCAGAAACTTTATGCGAANACATATGCTCACGA]
[+] EMBL BX619400             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      acgagGGAAGGCTNAGAATTCCTCAACTGACTTTCAAGTGTGCTACGATTTAACGAAATCGTCCGCTCTCTACAGTTCAGCATCAAATTCTGGGGAAAGTTATAAGCCAAGCACAAATCAACAACAACCGACCGTCGTTCAAACTTGGTGGATTAAAATCGACCGTGCGCTTAGCTTCCGTTTACACTCAAAGACATCAGCTAGAGCAC TTTTCCACAATTCTTGGCTCTGCGGAGCATGCCAGCAAGTTTATTGATTCAACCTCGTATCTGGCCAAGGGTCATCTGACGCCAGATGGTGACGCAGTGCTTGATAGTTGGGCTGGAGCAACTTACTTCTTTATAAATGCTGTTCCGGAATGGCAGGTTGTAAACGGTGGCAACTGGTTGCGTGTAGAGAATGCAGCTCGTAAAGTGGCTACACAGTTGAATGATANCGTAGACGTATACAGCGGTGTGTACCGACGTCCTCCAGCTGCCGAACAAGAAAGGTAATCTGGTTTCGTTGAGTTTGGGCGATGACGGTGTNGTACCAGTTCCAAAAT                                                                                                                 ]


>consensus_8874#0 GCCAGAATCGCACGAGGGTGTACTTGCCCAGAACGCTAGAACACCCCGCACAGCGCGGTC ACGAGTGAGATGTTCTTACCCATCGTTGTGATAACGTTATCTGCGCTTTTGCACGGTGCT ACCGCCAGATGTCGCGTGTACTTGAACGGGAATCTCACCCAACCCCACCCGCCGTTGTTT ATAAAGCAGTCCGGCAACAACCAGCAGTATGACCTTTTGCAGCCTACGGGATCGTTTTTC GAATGGCGTCAGGCGGATTCAATTATATTTGCATGTTCGCCAGCTAAAAACGTTCTCAAC AACACTCGCAACGGAAAAGCAACTTTTTCATGCTTCGAAGGACAAGACTTAACTCTAAAC GGCAATTTAAATCGAATCGCTATCAATGAAATCAGTTGTAGCTCAGCCGTTTCGGGAGCA ATAAAACCTTCGAATGTGTCCTGTGGCAATAAAGCAGGTCGGCTGTACAACATAGGCTTC GAAGTGGAAGGCACAGAATTCATCAACTACTTTCAAGTGTGCTACGATTTAACGAAATCG TCCGCTCTCTACAGTCAGCATCAAATTCTGGGGAAAGTTATAAGCCAAGCACAAATCAAC AACAACCGACCATCGTTCAAACTTGGTGGATTAAAATCGACCGTGCGCTTAGCTTCCGTT TACACTCAAAGACATCAGCTAGAGCACTTTTCCACAATTCTTGGCTCTGCGGAGCATGCC AGCAAGTTTATTGATTCAACCTCGTATCTGGCCAAGGGTCATCTGACGCCAGATGGTGAC GCAGTGCTTGATAGTTGGGCTGGAGCAACTTACTTCTTTATAAATGCTGTTCCGGAATGG CAGGTTGTAAACGGTGGCAACTGGTTGCGTGTAGAGAATGCAGCTCGTAAAGTGGCTACA CAGTTGAATGATACCGTAGACGTATACAGCGGTGTGTACGACGTCCTCCAGCTGCCGAAC AAGAAAGGTAATCTGGTTTCGTTGAGTTTGGGCGATGACGGTGTTGTACCAGTTCCAAAA TGGCTATGGAAGGCAGTAGTTCATCGGCCCAGCAATAAGGGTATTGTCCTCATCACACTA AACAATCCATTTGCCACCAGCGCAGAAACTTTATGCGAANACATATGCTCACGA



consensusID : consensus_8874#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 826
fasta sequence
                              [ACTGTTCGTTAGCAGCACGCATTCAGCACCACGGCCTAAGGATGTCGCGTGTACTTGAACGGGAATCTCACCCAACCCCACCCGCCGTTGTTTATAAAGCAGTCCGGCAACAACCAGCAGTATGACCTTTTGCAGCCTACGGGATCGTTTTTTGAATGGCGTCAGGCGGATTCAATTATATTTGCATGTTCGCCAGCTAAAAACGTTCTCAACAACACTCGCAACGGAAAAGCAACTTTTTCATGCTTCGAAGGACAAGACTTAACTCTAAACGGCAATTTAAATCGAATCGCTATCAATGAAATCAGTTGTAGCTCAGCCGTTTCGGGAGCAATAAAACCTTCGAATGTGTCCTGTGGCAATAAAGCAGGTCGGCTGTACAACATAGGCTTCGAAGTGGAAGGCACAGAATTCATCAACTACTTTCAAGTGTGCTACGATTTAA-CGAAATCGTCCGCTCTCTACAGTCAGCATCAAATTCTGGGGAAAGTTATAA-GCCAAGCACAAATCAACAACAACCGACCGTCGTTCAAACTTGGTGGATTAA-AATCGACCGTGCGCTTAGCTTCCGTTTACACTCAAAGACATCAGCTAGAGCAC-TTTTCCACAATTCTTGGCTCTGCGGAGCATGCCAGCAAGTTTATTGATTCAACCTCGTATCTGGCCAAGGGTCATCTGACGCCAGATGGTGACGCAGTGCTTGATAGTTGGGCTGGAGCAACTTACTTCTTTATAAATGCTGTTCCGGAATGGCAGGGTGTAAACGGTGGCAACTGGNTGCGTGTANAGAATGCAGCTCGTAAAGTGGCTACACAGTTGAATGATA]

[+] EMBL BX625106             [ACTGTTCGTTAGCAGCACGCATTCAGCACCACGGCCTAAGGATGTCGCGTGTACTTGAACGGGAATCTCACCCAACCCCACCCGCCGTTGTTTATAAAGCAGTCCGGCAACAACCAGCAGTATGACCTTTTGCAGCCTACGGGATCGTTTTTTGAATGGCGTCAGGCGGATTCAATTATATTTGCATGTTCGCCAGCTAAAAACGTTCTCAACAACACTCGCAACGGAAAAGCAACTTTTTCATGCTTCGAAGGACAAGACTTAACTCTAAACGGCAATTTAAATCGAATCGCTATCAATGAAATCAGTTGTAGCTCAGCCGTTTCGGGAGCAATAAAACCTTCGAATGTGTCCTGTGGCAATAAAGCAGGTCGGCTGTACAACATAGGCTTCGAAGTGGAAGGCACAGAATTCATCAACTACTTTCAAGTGTGCTACGATTTAA CGAAATCGTCCGCTCTCTACAGTCAGCATCAAATTCTGGGGAAAGTTATAA GCCAAGCACAAATCAACAACAACCGACCGTCGTTCAAACTTGGTGGATTAA AATCGACCGTGCGCTTAGCTTCCGTTTACACTCAAAGACATCAGCTAGAGCAC TTTTCCACAATTCTTGGCTCTGCGGAGCATGCCAGCAAGTTTATTGATTCAACCTCGTATCTGGCCAAGGGTCATCTGACGCCAGATGGTGACGCAGTGCTTGATAGTTGGGCTGGAGCAACTTACTTCTTTATAAATGCTGTTCCGGAATGGCAGGGTGTAAACGGTGGCAACTGGNTGCGTGTANAGAATGCAGCTCGTAAAGTGGCTACACAGTTGAATGATA]
[+] EMBL AL696090             [                                                                                                                                             ccnagGTTATTTGAATGGCGTCAGGCGGA TCAATTATATTTGCATGTTCGCCAGCTAAAAACGTTCTCAACAACACTCGCAACGGAAAAGCAACTTTTTCATGCTTCGAAGGACAAGACTTAACTCTAAACGGCAATTTAAATCGAATCGCTATCAATGAAATCAGTTGTAGCTCAGCCGTTTCGGGAGCAATAAAACCTTCGAATGTGTCCTGTGGCAATAAAGCAGGTCGGCTGTACAACATAGGCTTCGAAGTGGAAGGCACAGAATTCATCAACTACTTTCAAGTGTGCTACGATTTAACCGAAATCGTCCGCTCTCTACAGTCAGCATCAAATTCTGGGGAAAGTTATAAGGCCAAGCACAAATCAACAACAACCGACCGTCGTTCAAACTTGGTGGATTAACAATCGACCGTGCGCTTAGCTTCCGTTTACACTCAAAGACATCAGCTAGAGCACTTTTTCCACAATTCTTGGCTCTGCGGAGCATGCCAGCAAGTTTATTGATTCAACCT                                                                                                                                                                           ]


>consensus_8874#1 ACTGTTCGTTAGCAGCACGCATTCAGCACCACGGCCTAAGGATGTCGCGTGTACTTGAAC GGGAATCTCACCCAACCCCACCCGCCGTTGTTTATAAAGCAGTCCGGCAACAACCAGCAG TATGACCTTTTGCAGCCTACGGGATCGTTTTTTGAATGGCGTCAGGCGGATTCAATTATA TTTGCATGTTCGCCAGCTAAAAACGTTCTCAACAACACTCGCAACGGAAAAGCAACTTTT TCATGCTTCGAAGGACAAGACTTAACTCTAAACGGCAATTTAAATCGAATCGCTATCAAT GAAATCAGTTGTAGCTCAGCCGTTTCGGGAGCAATAAAACCTTCGAATGTGTCCTGTGGC AATAAAGCAGGTCGGCTGTACAACATAGGCTTCGAAGTGGAAGGCACAGAATTCATCAAC TACTTTCAAGTGTGCTACGATTTAACGAAATCGTCCGCTCTCTACAGTCAGCATCAAATT CTGGGGAAAGTTATAAGCCAAGCACAAATCAACAACAACCGACCGTCGTTCAAACTTGGT GGATTAAAATCGACCGTGCGCTTAGCTTCCGTTTACACTCAAAGACATCAGCTAGAGCAC TTTTCCACAATTCTTGGCTCTGCGGAGCATGCCAGCAAGTTTATTGATTCAACCTCGTAT CTGGCCAAGGGTCATCTGACGCCAGATGGTGACGCAGTGCTTGATAGTTGGGCTGGAGCA ACTTACTTCTTTATAAATGCTGTTCCGGAATGGCAGGGTGTAAACGGTGGCAACTGGNTG CGTGTANAGAATGCAGCTCGTAAAGTGGCTACACAGTTGAATGATA



consensusID : consensus_8874#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 826
fasta sequence
                              [AACTCAGCAAGCACAAATCACAACAACCGACCATCGTTCAAACTTGGTGGATTAAATCGACCGTGCGCTTAGCTTCCGTTTACACTCAAAGACATCAGCTAGAGCACTTTTCCACAATTCTTGGCTCGGCGGAGCATGCCAGCAAGTTTATTGATTCAACCTCGTATCTGGCCAAGGGTCATCTGACGCCAGATGGTGACGCAGCTGCTTGATAGCTTGGGCTGGAGCAACTTACTTCTTTATACAACTGCCTGTCTCCGGAACTGGCAGCGCTTGCTACACACGGCTGGCACACCTGGTTGCGCTGCTAGCAGCAACTGCACGCCTCGCTAACAGCTGGCTACACAGCTCCGCACAGTGCAATACCCCGGCTCACGCACGTACTACCAGCNGGNTGCTGTACCGCACGATCCATCCCCAGCNCCTGCCCGAACAACGCACACAGGCTAACTCCTGGGCTTCTCGCTCTGACGCTTCTGGGGCGCATGCACCGGCTGGTTTCGCTCACCCCACGCCTTCCCACACACAGTGGCCTACTGCGACACGCGCAGNTAGCTCTCACTCGCGCCCCAGCAACTAAGGGCTATTGCTCCCTCCCACTCCACCACCTTAACACACAACCTCCCCAATATANTGCCCCACCCCAGTCCGCCAACAANAACCTTTATAANTGCCGCAACGCACCATTAACTGCTCCACCGCACTACTGNGCCCTGGCACAACTCAATCTAACAANAACTTNTCACCGCAACTTCTACGCGCACAAACGGGCTATCACGCTACCTGTCTGCCACCTGCTACTCCCGACANCCTTCACAAAACTCAA]

[+] EMBL AL933640             [AACTCAGCAAGCACAAATCACAACAACCGACCATCGTTCAAACTTGGTGGATTAAATCGACCGTGCGCTTAGCTTCCGTTTACACTCAAAGACATCAGCTAGAGCACTTTTCCACAATTCTTGGCTCGGCGGAGCATGCCAGCAAGTTTATTGATTCAACCTCGTATCTGGCCAAGGGTCATCTGACGCCAGATGGTGACGCAGCTGCTTGATAGCTTGGGCTGGAGCAACTTACTTCTTTATACAACTGCCTGTCTCCGGAACTGGCAGCGCTTGCTACACACGGCTGGCACACCTGGTTGCGCTGCTAGCAGCAACTGCACGCCTCGCTAACAGCTGGCTACACAGCTCCGCACAGTGCAATACCCCGGCTCACGCACGTACTACCAGCNGGNTGCTGTACCGCACGATCCATCCCCAGCNCCTGCCCGAACAACGCACACAGGCTAACTCCTGGGCTTCTCGCTCTGACGCTTCTGGGGCGCATGCACCGGCTGGTTTCGCTCACCCCACGCCTTCCCACACACAGTGGCCTACTGCGACACGCGCAGNTAGCTCTCACTCGCGCCCCAGCAACTAAGGGCTATTGCTCCCTCCCACTCCACCACCTTAACACACAACCTCCCCAATATANTGCCCCACCCCAGTCCGCCAACAANAACCTTTATAANTGCCGCAACGCACCATTAACTGCTCCACCGCACTACTGNGCCCTGGCACAACTCAATCTAACAANAACTTNTCACCGCAACTTCTACGCGCACAAACGGGCTATCACGCTACCTGTCTGCCACCTGCTACTCCCGACANCCTTCACAAAACTCAA]


>consensus_8874#2 AACTCAGCAAGCACAAATCACAACAACCGACCATCGTTCAAACTTGGTGGATTAAATCGA CCGTGCGCTTAGCTTCCGTTTACACTCAAAGACATCAGCTAGAGCACTTTTCCACAATTC TTGGCTCGGCGGAGCATGCCAGCAAGTTTATTGATTCAACCTCGTATCTGGCCAAGGGTC ATCTGACGCCAGATGGTGACGCAGCTGCTTGATAGCTTGGGCTGGAGCAACTTACTTCTT TATACAACTGCCTGTCTCCGGAACTGGCAGCGCTTGCTACACACGGCTGGCACACCTGGT TGCGCTGCTAGCAGCAACTGCACGCCTCGCTAACAGCTGGCTACACAGCTCCGCACAGTG CAATACCCCGGCTCACGCACGTACTACCAGCNGGNTGCTGTACCGCACGATCCATCCCCA GCNCCTGCCCGAACAACGCACACAGGCTAACTCCTGGGCTTCTCGCTCTGACGCTTCTGG GGCGCATGCACCGGCTGGTTTCGCTCACCCCACGCCTTCCCACACACAGTGGCCTACTGC GACACGCGCAGNTAGCTCTCACTCGCGCCCCAGCAACTAAGGGCTATTGCTCCCTCCCAC TCCACCACCTTAACACACAACCTCCCCAATATANTGCCCCACCCCAGTCCGCCAACAANA ACCTTTATAANTGCCGCAACGCACCATTAACTGCTCCACCGCACTACTGNGCCCTGGCAC AACTCAATCTAACAANAACTTNTCACCGCAACTTCTACGCGCACAAACGGGCTATCACGC TACCTGTCTGCCACCTGCTACTCCCGACANCCTTCACAAAACTCAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8874#0      GCCAGAATCGCACGAGGGTGTACTTGCCCAGAACGCTAGAACACCCCGCACAGCGCGGTC 60
consensus_8874#1      ------------------------------------------------------------
consensus_8874#2      ------------------------------------------------------------
                                                                                  

consensus_8874#0      ACGAGTGAGATGTTCTTACCCATCGTTGTGATAACGTTATCTGCGCTTTTGCACGGTGCT 120
consensus_8874#1      -----------------ACTGTTCGTTAGCAGCACGCATTCAGCAC-----CACGG---- 34
consensus_8874#2      ----------------AACTCAGCAAGCACAAATCACAACAACCGAC----CATCG---- 36
                                       **    *      *   *        *       **  *    

consensus_8874#0      ACCGCCAGATGTCGCGTGTACTTGAACGGGAATCTCAC--CCAACCCCACCCGCCGTTGT 178
consensus_8874#1      -CCTAAGGATGTCGCGTGTACTTGAACGGGAATCTCAC--CCAACCCCACCCGCCGTTGT 91
consensus_8874#2      -TTCAAACTTGGTGGATTAAATCGACCGTGCGCTTAGCTTCCGTTTACACTCAAAGACAT 95
                               **  *  *  * * ** ** *    *  *  **     *** *   *   *

consensus_8874#0      TTA-TAAAGCAGTCCGGCAACAACCAGCAGTATGACCTTTTGCAGCCTACGGGATCGTTT 237
consensus_8874#1      TTA-TAAAGCAGTCCGGCAACAACCAGCAGTATGACCTTTTGCAGCCTACGGGATCGTTT 150
consensus_8874#2      CAGCTAGAGCACTTTT-CCACAATT-----CTTGGCTCGGCGGAGCATGCCAGCAAGTTT 149
                          ** **** *    * ****         ** *     * *** * *  *   ****

consensus_8874#0      TTCGAAT-GGCGTCAGGCGGATTCAATTATATTTGCATGTTCGCCAGCTAAAAACGTTCT 296
consensus_8874#1      TTTGAAT-GGCGTCAGGCGGATTCAATTATATTTGCATGTTCGCCAGCTAAAAACGTTCT 209
consensus_8874#2      ATTGATTCAACCTCGTATCTGGCCAAGGGTCATCTGACGCCAGATGGTGACGCAGCTGCT 209
                       * ** *   * **         ***   *  *   * *   *   *  *   *  * **

consensus_8874#0      CAACAACACTCGCAACGGAAAAGCAACTTTTTCATGC---TTCGAAGGACAAGACTTAAC 353
consensus_8874#1      CAACAACACTCGCAACGGAAAAGCAACTTTTTCATGC---TTCGAAGGACAAGACTTAAC 266
consensus_8874#2      TGATAGCTTGGGCTG-GAGCAACTTACTTCTTTATACAACTGCCTGTCTCCGGAACTGGC 268
                        * * *    **   *   **   **** ** ** *   * *      *  **  *  *

consensus_8874#0      TCTAAACGGCA-ATTTAAATCGAATCGCTATCAATGAAATCAGTTGTAGCTCAGCCGTTT 412
consensus_8874#1      TCTAAACGGCA-ATTTAAATCGAATCGCTATCAATGAAATCAGTTGTAGCTCAGCCGTTT 325
consensus_8874#2      AGCGCTTGCTACACACGGCTGGCACACCTGGTTGCGCTGCTAGCAGCAACTGCAC-GCCT 327
                             *  * *      * * *   **      *     **  * * **   * *  *

consensus_8874#0      CGGGAGCAATAAAACCTTCGAATGTGTCCTGTGGCAATAAAGCAGGTCGGCTGTACAACA 472
consensus_8874#1      CGGGAGCAATAAAACCTTCGAATGTGTCCTGTGGCAATAAAGCAGGTCGGCTGTACAACA 385
consensus_8874#2      CGCTAACAGCTGGCTACACAGCTCCGCACAGTG-CAATACCCCGGCTCACGCACGTACTA 386
                      **  * **          *   *  *  * *** *****   * * **        *  *

consensus_8874#0      TAGGCTTCGAAGTGGAAGGCACAGAATTCATCAACTACTTTCAAGTGTGCTACGATTTAA 532
consensus_8874#1      TAGGCTTCGAAGTGGAAGGCACAGAATTCATCAACTACTTTCAAGTGTGCTACGATTTAA 445
consensus_8874#2      CCAGCNGGNTGCTGTACCGCAC--GATCCATCCCCAGCNCCTGCCCGAACAACGCACACA 444
                         **       ** *  ****   ** ****  *  *        *  * ***     *

consensus_8874#0      CGAAATCGTCCGCTCTCTACAGTCAGCATCAAATTCTGGGGAAAGTTATAAGCCAAGCAC 592
consensus_8874#1      CGAAATCGTCCGCTCTCTACAGTCAGCATCAAATTCTGGGGAAAGTTATAAGCCAAGCAC 505
consensus_8874#2      GGCTAACTCCTGGGCTTCTCGCTCTGACGC---TTCTGGGGCG---CATGCACCGG---C 495
                       *  * *  * *  **   *  ** *   *   ********      **   **     *

consensus_8874#0      AAATCAACAACAACCGACCATCGTTCAAACTTGGTGGATTAAAATCGACCGTGCGCTTAG 652
consensus_8874#1      AAATCAACAACAACCGACCGTCGTTCAAACTTGGTGGATTAAAATCGACCGTGCGCTTAG 565
consensus_8874#2      TGGTTTCGCTCACCCCACGCCTTCCCACACACAGTGGCCTACTGCGACACGCGCAGNTAG 555
                         *      ** ** **       ** **   ****  **        ** **   ***

consensus_8874#0      CTTCCGTTTACACTCAAAGACATCAGCTAGAGCACTTTTCCACAATTCTTGGCTCTGCGG 712
consensus_8874#1      CTTCCGTTTACACTCAAAGACATCAGCTAGAGCACTTTTCCACAATTCTTGGCTCTGCGG 625
consensus_8874#2      CTCTCACTCGCGCCCCAGCAACTAAGGGCTATTGCTCCCTCCCACTCCACCACCTTAACA 615
                      **  *  *  * * * *  *  * **    *   **    * ** * *    *  *    

consensus_8874#0      AGCATGCCAGCAAGTTTATTGATTCAACCTCGTATCTGGCCAAGGGTCATCT--GACGCC 770
consensus_8874#1      AGCATGCCAGCAAGTTTATTGATTCAACCTCGTATCTGGCCAAGGGTCATCT--GACGCC 683
consensus_8874#2      CACAACCTCCCCAATATANTGCCCCACCCCAGTCCGCCAACAANAACCTTTATAANTGCC 675
                        **  *   * * * ** **   ** **  **       ***    * *       ***

consensus_8874#0      AGATGGTGACGC--AGTGCTTGATAGT-----TGGGC--TGGAGCAACTTACTTCTTTAT 821
consensus_8874#1      AGATGGTGACGC--AGTGCTTGATAGT-----TGGGC--TGGAGCAACTTACTTCTTTAT 734
consensus_8874#2      GCAACGCACCATTAACTGCTCCACCGCACTACTGNGCCCTGGCACAACTCAATCTAACAA 735
                        *  *   *    * ****  *  *      ** **  ***  ***** * *     * 

consensus_8874#0      AAATGCTGTTCCGGAATGGCAGGTTGTAAACGGTGGCAACTG-GTTGCGTGTAGAGAA-- 878
consensus_8874#1      AAATGCTGTTCCGGAATGGCAGGGTGTAAACGGTGGCAACTG-GNTGCGTGTANAGAA-- 791
consensus_8874#2      NAACTTNTCACCGCAACTTCTACGCGCACAAACGGGCTATCACGCTACCTGTCTGCCACC 795
                       **       *** **   *     * * *    *** *    * * * ***     *  

consensus_8874#0      TGCAGCTCGTAA-AGTGGCTACACAGTTGAATGATACCGTAGACGTATACAGCGGTGTGT 937
consensus_8874#1      TGCAGCTCGTAA-AGTGGCTACACAGTTGAATGATA------------------------ 826
consensus_8874#2      TGCTACTCCCGACANCCTTCACAAAACTCAA----------------------------- 826
                      ***  ***   * *      *** *  * **                             

consensus_8874#0      ACGACGTCCTCCAGCTGCCGAACAAGAAAGGTAATCTGGTTTCGTTGAGTTTGGGCGATG 997
consensus_8874#1      ------------------------------------------------------------
consensus_8874#2      ------------------------------------------------------------
                                                                                  

consensus_8874#0      ACGGTGTTGTACCAGTTCCAAAATGGCTATGGAAGGCAGTAGTTCATCGGCCCAGCAATA 1057
consensus_8874#1      ------------------------------------------------------------
consensus_8874#2      ------------------------------------------------------------
                                                                                  

consensus_8874#0      AGGGTATTGTCCTCATCACACTAAACAATCCATTTGCCACCAGCGCAGAAACTTTATGCG 1117
consensus_8874#1      ------------------------------------------------------------
consensus_8874#2      ------------------------------------------------------------
                                                                                  

consensus_8874#0      AANACATATGCTCACGA 1134
consensus_8874#1      -----------------
consensus_8874#2      -----------------
                                       




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)