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Anopheles gambiae
cluster # 8899 cluster # 8899       Sequences # 12       consensus # 6


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8899#0 length = 933 sequences # 4  
consensus_8899#1 length = 917 sequences # 3  
consensus_8899#2 length = 741 sequences # 2  
consensus_8899#3 length = 688 sequences # 1  
consensus_8899#4 length = 579 sequences # 1  
consensus_8899#5 length = 444 sequences # 1  

consensusID : consensus_8899#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 933
fasta sequence
                              [CCGCCCACGCGTCCGGTGTGATTCAACGTATGCATGTTACTATACTATAACAAACAAACAAAACAAGCGCACTCTATCACAATCTATCCGCGAAAGAGCGTGCAACACTATCGCGGTGAGTGTGCGTGTGCACTACGGTGTTGCTTAGCCACTTAACGAGATTAAGTGTAATTTACACAACAAAACACAAGCTCAAATCACGTACTTTCTCGCTCGCACAGCACGGTACGGTTGTGACTCTCCCGTGTTCCACGCAAGATCATGGCACTACAGCTGCCTGACAGCTCGAAGCCCTCAACTCCAGCCTGTTGAGGGTTTCGAGGCTGCAATGTGGCAGATAGGGAGACACAAACCGCACGGCACACTGTGTCTCGATCTAATCAAACAACAATCAATCCACAACATGGCGCACACTTTAAGCTGGGTTGTGCTTTTCCATAGGTTCGTTTGCTTACCATTCAGTTTAGAAGATCGCGCTATCTAACCGCTCGACCGTACCCAATACCTTTTCGGTCGGTGGTTGATTATTTTTTGTTTTCTCTCGGGGGCATTCAATTTCCAATCCACCTCGCCAAAACAGAATGGTGGCAAAGCAAATTTAAGAAACCAAGCAAAAATATATGCGCAACTTACAGTGAAATTACAATTATGTGAGAATTTGCTTATCCCAAAGCATCATCTCCATGGTGACGAACATCGCTTCACGATTTACACATGTTTGTGTATGAATAACAACCACAAACGGATCAATGGAAGAGACGCTCAACACGTGCCGTCTCATGTTGTGTGGTGAGTGAGTGTGTAGCGAGAAAACATTATGGTATAATACAACAAAAAATAATAATGCGACAGCAAACTCTATATAATAAATTGGCGCAAGAGGGCGGTAGTGATTTGTTTACACTTTACAAGAACAAGGCAAAGCGGAAACAT]

[+] EMBL BM657187             [CCGCCCACGCGTCCGGTGTGATTCAACGTATGCATGTTACTATACTATAACAAACAAACAAAACAAGCGCACTCTATCACAATCTATCCGCGAAAGAGCGTGCAACACTATCGCGGTGAGTGTGCGTGTGCACTACGGTGTTGCTTAGCCACTTAACGAGATTAAGTGTAATTTACACAACAAAACACAAGCTCAAATCACGTACTTTCTCGCTCGCACAGCACGGTACGGTTGTGACTCTCCCGTGTTCCACGCAAGATCATGGCACTACAGCTGCCTGACAGCTCGAAGCCCTCAACTCCAGCCTGTTGAGGGTTTCGAGGCTGCAATGTGGCAGATAGGGAGACACAAACCGCACGGCACACTGTGTCTCGATCTAATCAAACAACAATCAATCCACAACATGGCGCACACTTTAAGCTGGGTTGTGCTTTTCCATAGGTTCGTTTGCTTACCATTCAGTTTAGAAGATCGCGCTATCTAACCGCTCGACCGTACCCAATACCTTTTCGGTCGGTGGTTGATTATTTTTTGTTTTCTCTCGGGGGCATTCAATTTCCAATCCACCTCGCCAAAACAGAATGGTGGCAAAGCAAATTTAAGAAACCAAGCAAAAATATATGCGCAACTTACAGTGAAATTACAATTATGTGAGAATTTGCTTATCCCAAAGC                                                                                                                                                                                                                                                                   ]
[+] EMBL BM606510             [                                                                                                                                                                                  ccgAAAACACAAGCTCAAATCACGTACTTTCTCGCTCGCACAGCACGGTACGGTTGTGACTCTCCCGTGTTCCACGCAAGATCATGGCACTACAGCTGCCTGACAGCTCGAAGCCCTCAACTCCAGCCTGTTGAGGGTTTCGAGGCTGCAATGTGGCAGATAGGGAGACACAAACCGCACGGCACACTGTGTCTCGATCTAATCAAACAACAATCAATCCACAACATGGCGCACACTTTAAGCTGGGTTGTGCTTTTCCATAGGTTCGTTTGCTTACCATTCAGTTTAGAAGATCGCGCTATCTAACCGCTCGACCGTACCCAATACCTTTTCGGTCGGTGGTTGATTATTTTTTGTATTCTCTCGGGGGCATTCAATTTCCAATCCACCTCGC                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BM627287             [                                                                                                                                                                                                                                                                 ccgCATGGCACTACAGCTGCCTGACAGCTCGAAGCCCTCAACTCCAGCCTGTTGAGGGTTTCGAGGCTGCAATGTGGCAGATAGGGAGACACAAACCGCACGGCACACTGTGTCTCGATCTAATCAAACAACAATCAATCCACAACATGGCGCACACTTTAAGCTGGGTTGTGCTTTTCCATAGGTTCGTTTGCTTACCATTCAGTTTAGAAGATCGCGCTATCTAACCGCTCGACCGTACCCAATACCTTTTCGGTCGGTGGTTGATTATTTTTTGTTTTCTCTCGGGGGCATTCAATTTCCAATCCACCTCGCCAAAACAGAATGGTGGCAAAGCAAATTTAAGAAACCAAGCAAAAATATATGCGCAACTTACAGTGAAATTACAATTATGTGAGAATTTGCTTATCCCAAAGCATCATCTCCATGGTGACGAACATCGCTTCACGATTTACACATGTTTGTGTATGAATAACAACCACAAACGGATCAATGGAAGAGACGCTCAACACGTGCCGTCTCATGTTGTGTGGTGAGTGAGTGTGTAGCGAGAAAACATTATGGTATAATACAACAAAAAATAATAATGCGACAGCAAACTCTATATAATAAATTGGCGCAAGAGGGCGGTAGTGATTTGTTTACACTTTACAAGAACAAGGCAAAGCGGAAACAT]
[+] EMBL AL931528             [                                                                                                                                                                                                                                                                                                                                                                                                                   cgaGCTCACACTTT AGCTGGG TGTGCTTTTCCATAGGTTCGTTTGCTTACCATTCAGTTTAGAAGATCGCGCTATCTAACCGCTCGACCGTACCCAATACCTTTTCGGTCGGTGGTTGATTA TTTTTGTTTTCTCTCGGGGGCATTCAATTTCCAATCCACCTCGCCAAAACAGAATGGTGGCAAAGCAAATTTAAGAAACCAAGCAAAAATATATGCGCAACTTACAGTGAAATTACAATTATGTGAGAATTTGCTTATCCCAAAGCATCATCTCCATGGTGACGAACATCGCTTCACGATTTACACATGTTTGTGTATGAATAACAACCACAAACGGATCAGTGGAAAAGACGCTCAACACGTGCCGTCTCATGTTGTGTGGTGAGTGAcg                                                                                                                                      ]


>consensus_8899#0 CCGCCCACGCGTCCGGTGTGATTCAACGTATGCATGTTACTATACTATAACAAACAAACA AAACAAGCGCACTCTATCACAATCTATCCGCGAAAGAGCGTGCAACACTATCGCGGTGAG TGTGCGTGTGCACTACGGTGTTGCTTAGCCACTTAACGAGATTAAGTGTAATTTACACAA CAAAACACAAGCTCAAATCACGTACTTTCTCGCTCGCACAGCACGGTACGGTTGTGACTC TCCCGTGTTCCACGCAAGATCATGGCACTACAGCTGCCTGACAGCTCGAAGCCCTCAACT CCAGCCTGTTGAGGGTTTCGAGGCTGCAATGTGGCAGATAGGGAGACACAAACCGCACGG CACACTGTGTCTCGATCTAATCAAACAACAATCAATCCACAACATGGCGCACACTTTAAG CTGGGTTGTGCTTTTCCATAGGTTCGTTTGCTTACCATTCAGTTTAGAAGATCGCGCTAT CTAACCGCTCGACCGTACCCAATACCTTTTCGGTCGGTGGTTGATTATTTTTTGTTTTCT CTCGGGGGCATTCAATTTCCAATCCACCTCGCCAAAACAGAATGGTGGCAAAGCAAATTT AAGAAACCAAGCAAAAATATATGCGCAACTTACAGTGAAATTACAATTATGTGAGAATTT GCTTATCCCAAAGCATCATCTCCATGGTGACGAACATCGCTTCACGATTTACACATGTTT GTGTATGAATAACAACCACAAACGGATCAATGGAAGAGACGCTCAACACGTGCCGTCTCA TGTTGTGTGGTGAGTGAGTGTGTAGCGAGAAAACATTATGGTATAATACAACAAAAAATA ATAATGCGACAGCAAACTCTATATAATAAATTGGCGCAAGAGGGCGGTAGTGATTTGTTT ACACTTTACAAGAACAAGGCAAAGCGGAAACAT



consensusID : consensus_8899#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 917
fasta sequence
                              [CCGGGCAACTAAGGCAACTACTACAACAGGCGAGATGTAATTGTTCGATGAAAATGTGTACTTTATGAAAGTAACGAAACAACCGTTACCGCTTATTCCATTTTATCCCCAAATTTAGTGATTTAATGTGTGATTCAACGTATGCATGTTACTATACTATAACAAACAAACAAAACAAGCGCACTCTATCACAATCTATCCGCG-AAGAGCGTGCAACACTATCGCGGTGAGTGT-----T-CACTACGGTGTTGCTTAGCCACTTAACGAGATTAAGTGTAATTTACACAACAAAACACAAGCTCAAATCACGTACTTTCTCGCTCGCACAGCACGGTACGGTTGTGACTCTCCCGTGTTCCACGCAAGATCATGGCACTACAGCTGCCTGACAGCTCGAAGCCCTCAACTCCAGCCTGTTGAGGGTTTCGAGGCTGCAATGTGGCAGATAGGGAGACACAAACCGCACGGCACACTGTGCCTCGATCTAATCAACCAACAATCAATCCACAACATGACGCACACTTAAGCTGGGTTGTGCTTTTCCGTCGATTCGTTTGCTTACCATTCAGTTTAGAAGATCGCGCTATATAACCGCTTGACCGTACCCAATACCTTTTCGGTCGGTGGTTGATTCTTTTTTTGTTTTCTCTCGGGGGCATTCAATTTCCAATCCACCTCGCCAAAAGCTGCACCAAACAAAAATGGTGGCAAAGCAAATTTAAGAAACCAAGCAAAAATGTATGCGTAACTTACAGTGAAATTACAATTATGTGAGGATTTGCTTGTTAAACAGCATCATCTCCATGGTGACGAACATCGCTTCACGATTTACACATGCTTGTGTATGAATAATAACCACAAACGGATCAATGGAAAAGACGCTCAACACGTGCCGTCTCATGTTGTGTGGTGAGTGAGTG]

[+] EMBL BM596889             [CCGGGCAACTAAGGCAACTACTACAACAGGCGAGATGTAATTGTTCGATGAAAATGTGTACTTTATGAAAGTAACGAAACAACCGTTACCGCTTATTCCATTTTATCCCCAAATTTAGTGATTTAATGTGTGATTCAACGTATGCATGTTACTATACTATAACAAACAAACAAAACAAGCGCACTCTATCACAATCTATCCGCGAAAGAGCGTGCAACACTATCGCGGTGAGTGTGCGTGTGCACTACGGTGTTGCTTAGCCACTTAACGAGATTAAGTGTAATTTACACAACAAAACACAAGCTCAAATCACGTACTTTCTCGCTCGCACAGCACGGTACGGTTGTGACTCTCCCGTGTTCCACGCAAGATCATGGCACTACAGCTGCCTGACAGCTCGAAGCCCTCAACT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BX606173             [                                             CGATGAAAATGTGTACTTTATGAAAGTAACGAAACAACCGTTACCGCTTATTCCATTTTATCCCCAAATTTAGTGATTTAATGTGTGATTCAACGTATGCATGTTACTATACTATAACAAACAAACAAAACAAGCGCACTCTATCACAATCTATCCGCG AAGAGCGTGCAACACTATCGCGGTGAGTGT     T CACTACGGTGTTGCTTAGCCACTTAGCGAGATTAAGTGTAATTTACACAACAAAACACAAGCTCAAATCACGTACTTTCTCGCTCGCACAGCATGGTACGGTTGTGACTCTCCCGTGTTCCACGCAAGATCATGGCACTACAGCTGCCTGACAGCTCGAAGCCCTCAACTCCAGCCTGTTGAGGGTTTCGAGGCTGCAATGTGGCAGATAGGGAGACACAAACCGCACGGCACACTGTGCCTCGATCTAATCAACCAACAATCAATCCACAACATGACGCACACTTAAGCTGGGTTGTGCTTTTCCGTCGATTCGTTTGCTTACCATTCAGTTTAGAAGATCGCGCTATATAACCGCTTGACCGTACCCAATACCTTTTCGGTCGGTGGTTGATTCTTTTTTTGTTTTCTCTCGGGGGCATTCAATTTCCAATCCACCTCGCCAAAAGCTGCACCAAACAAAAATGGTGGCAAAGCAAATTTAAGAAACCAAGCAAAAATGTATGCGTAACTTACAGTGAAATTACAATTATGTGAGGATTTGCTTGTTAAACAGCATCATCTCCATGGTGACGAACATCGCTTCACGATTTACACATGCTTGTGTATGAATAATAACCACAAACGGATCAATGGAAAAGACGCTCAACACGTGCCGTCTCATGTTGTGTGGTGAGTGAGTG]
[+] EMBL BX602772             [                                                                                                                                                                                                                                                                                                                                                                                              CAGCTGCCTGACAGCTCGAAGCCCTCAACTCCAGCCTGTTGAGGGTTTCGAGGCTGCAATGTGGCAGATAGGGAGACACAAACCGCACGGCACACTGTGCCTCGATCTAATCAACCAACAATCAATCCACAACATGACGCACACTTAAGCTGGGTTGTGCTTTTCCGTCGATTCGTTTGCTTACCATTCAGTTTAGAAGATCGCGCTATATAACCGCTTGACCGTACCCAATACCTTTTCGGTCGGTGGTTGATTCTTTTTTTGTTTTCTCTCGGGGGCATTCAATTTCCAATCCACCTCGCCAAAAGCTGCACCAAACAAAAATGGTGGCAAAGCAAATTTAAGAAACCAAGCAAAAATGTATGCGTAACTTACAGTGAAATTACAATTATGTGAGGATTTGCTTGTTAAACAGCATCATCTCCATGGTGACGAACATCGCTTCACGATTTACACATGCTTGTGTATGAATAATAACCACAAACGGATCAATGGAAAAGACGCTCAACACGTGCCGTCTCATGTTGTGTGGTGAG      ]


>consensus_8899#1 CCGGGCAACTAAGGCAACTACTACAACAGGCGAGATGTAATTGTTCGATGAAAATGTGTA CTTTATGAAAGTAACGAAACAACCGTTACCGCTTATTCCATTTTATCCCCAAATTTAGTG ATTTAATGTGTGATTCAACGTATGCATGTTACTATACTATAACAAACAAACAAAACAAGC GCACTCTATCACAATCTATCCGCGAAGAGCGTGCAACACTATCGCGGTGAGTGTTCACTA CGGTGTTGCTTAGCCACTTAACGAGATTAAGTGTAATTTACACAACAAAACACAAGCTCA AATCACGTACTTTCTCGCTCGCACAGCACGGTACGGTTGTGACTCTCCCGTGTTCCACGC AAGATCATGGCACTACAGCTGCCTGACAGCTCGAAGCCCTCAACTCCAGCCTGTTGAGGG TTTCGAGGCTGCAATGTGGCAGATAGGGAGACACAAACCGCACGGCACACTGTGCCTCGA TCTAATCAACCAACAATCAATCCACAACATGACGCACACTTAAGCTGGGTTGTGCTTTTC CGTCGATTCGTTTGCTTACCATTCAGTTTAGAAGATCGCGCTATATAACCGCTTGACCGT ACCCAATACCTTTTCGGTCGGTGGTTGATTCTTTTTTTGTTTTCTCTCGGGGGCATTCAA TTTCCAATCCACCTCGCCAAAAGCTGCACCAAACAAAAATGGTGGCAAAGCAAATTTAAG AAACCAAGCAAAAATGTATGCGTAACTTACAGTGAAATTACAATTATGTGAGGATTTGCT TGTTAAACAGCATCATCTCCATGGTGACGAACATCGCTTCACGATTTACACATGCTTGTG TATGAATAATAACCACAAACGGATCAATGGAAAAGACGCTCAACACGTGCCGTCTCATGT TGTGTGGTGAGTGAGTG



consensusID : consensus_8899#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 741
fasta sequence
                              [ATCGCCGAGGTTTTTTTGTTTTCTCTCGGGGCGCATTCAATTTCCAATCCACCTCGCCAAAAGCTGCACCAAACAAAAATGGTGTCAAAGCAAATTATGAAATCAAGTAAAAATGTATGCGCAACTTACAGTGAAATTACAATTATGTGAGAATTTGCTTATCCCAAAGCATCATCTCCATGGTGACGAACATCGCTTCACGATTTACACATGTTTGTGTATGAATAACAACCACAAACGGATCAATGGAAAAGACGCTCAACACGTGCCGTCTCATGTTGTGTGGT--GTGAGTGTGTAGCGGGAAAACATTATGGTATAATACAA-AGAAAATAATAATGCGACAGCAAACTCTATATAATAAATTGGCGCAAGAGGGCGGTAGTGATTTGTTTACACTTTACAAGAACAAGGCNAAAGCGGAAACATGGACAATTCTATCATGAATAAACTACTAAATCTAAACGAACAAGG--AACAAACAAACACGATCCATGTGAAGTAGAAGACGGCAGAAAAAAAACAAGTGTCAGAATAATTAGCAGACGACTGAAGAGGGGNANAAAAAACGACATTAATCAGAGACTGACGTAAAAGACCACTGGAGGAACACAGAAAGAAGCAANAGCAAACAAAACAGACAAAGCTGTNCAATGATGACACTCCCATTCACAAGATAACATCAGGCNGCATCCGTGGGATCACGGCCAGCAGCACGGCGAGCAAAAACCACGGGACGCTCCTC]

[+] EMBL AL931679             [ATCGCCGAGGTTTTTTTGTTTTCTCTCGGGGCGCATTCAATTTCCAATCCACCTCGCCAAAAGCTGCACCAAACAAAAATGGTGTCAAAGCAAATTATGAAATCAAGTAAAAATGTATGCGCAACTTACAGTGAAATTACAATTATGTGAGAATTTGCTTATCCCAAAGCATCATCTCCATGGTGACGAACATCGCTTCACGATTTACACATGTTTGTGTATGAATAACAACCACAAACGGATCAATGGAAAAGACGCTCAACACGTGCCGTCTCATGTTGTGTGGT  GTGAGTGTGTAGCGGGAAAACATTATGGTATAATACAA AGAAAATAATAATGCGACAGCAAACTCTATATAATAAATTGGCGCAAGAGGGCGGTAGTGATTTGTTTACACTTTACAAGAACAAGGCNAAAGCGGAAACATGGACAATTCTATCATGAATAAACTACTAAATCTAAACGAACAAGG  AACAAACAAACACGATCCATGTGAAGTAGAAGACGGCAGAAAAAAAACAAGTGTCAGAATAATTAGCAGACGACTGAAGAGGGGNANAAAAAACGACATTAATCAGAGACTGACGTAAAAGACCACTGGAGGAACACAGAAAGAAGCAANAGCAAACAAAACAGACAAAGCTGTNCAATGATGACACTCCCATTCACAAGATAACATCAGGCNGCATCCGTGGGATCACGGCCAGCAGCACGGCGAGCAAAAACCACGGGACGCTCCTC]
[+] EMBL BX609362             [                                                                                           AAATTATGAAATCAAGTAAAAATGTATGCGCAACTTACAGTGAAATTACAATTATGTGAGAATTTGCTTATCCCAAAGCATCATCTCCATGGTGACGAACATCGCTTCACGATTTACACATGTTTGTGTATGAATAACAACCACAAACGGATCAATGGAAAAGACGCTCAACACGTGCCGTCTCATGTTGTGTGGTGAGTGAGTGTGTAGCGAGAAAACATTATGGTATAATACAACAAAAAATAATAATGCGACAGCAAACTCTATATAATAAATTGGCGCAAGAGGGCGGTAGTGATTTGTTTACACTTTACAAGAACAAGGC AAAGCGGAAACATGGACAATTCTATCACGAATAAACAACTAAATCTAAACGAACAAGGAAAACAAACAAACACGATCCATGTG                                                                                                                                                                                                                                                      ]


>consensus_8899#2 ATCGCCGAGGTTTTTTTGTTTTCTCTCGGGGCGCATTCAATTTCCAATCCACCTCGCCAA AAGCTGCACCAAACAAAAATGGTGTCAAAGCAAATTATGAAATCAAGTAAAAATGTATGC GCAACTTACAGTGAAATTACAATTATGTGAGAATTTGCTTATCCCAAAGCATCATCTCCA TGGTGACGAACATCGCTTCACGATTTACACATGTTTGTGTATGAATAACAACCACAAACG GATCAATGGAAAAGACGCTCAACACGTGCCGTCTCATGTTGTGTGGTGTGAGTGTGTAGC GGGAAAACATTATGGTATAATACAAAGAAAATAATAATGCGACAGCAAACTCTATATAAT AAATTGGCGCAAGAGGGCGGTAGTGATTTGTTTACACTTTACAAGAACAAGGCNAAAGCG GAAACATGGACAATTCTATCATGAATAAACTACTAAATCTAAACGAACAAGGAACAAACA AACACGATCCATGTGAAGTAGAAGACGGCAGAAAAAAAACAAGTGTCAGAATAATTAGCA GACGACTGAAGAGGGGNANAAAAAACGACATTAATCAGAGACTGACGTAAAAGACCACTG GAGGAACACAGAAAGAAGCAANAGCAAACAAAACAGACAAAGCTGTNCAATGATGACACT CCCATTCACAAGATAACATCAGGCNGCATCCGTGGGATCACGGCCAGCAGCACGGCGAGC AAAAACCACGGGACGCTCCTC



consensusID : consensus_8899#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 688
fasta sequence
                              [CCGGATCTTTCTTTCTTTTTCTTTTCTTTTTTTCTTTTTTTTTGTATGAGTTTTTGCTTTGCTTGTTTAGCTTTGTTCTCGTTTATCCGTTCGTCGTTGGCCGATTTCCTTTGCAGTGCATTATGTTGTCGGGTACCGTTTTGTTCCGTTTGTTCGATTCGAGTTCGAGTTTAGTATGTTGGGTGTGTTGTGGGATAACGCGGGATAAATAAAAATGCCAATCCAAAACAACTGTGAAACTGAACGCTAAGAAAGCGAGCGAATGAAACAAAGCCGTTCACTACTACAGGTTCCGTCCAAGCACTAAACATACACTAAAGTGAGACAGTGAGAGTTTATGGTAGAGTTGTATTGAAACATAATCCGGTTTATTTTTCATCTTTCTTACTTAGATAATGCGCTCGCAGTGGGAGGGAGCGCCCATGGTTTTGCTGCCGTGCTGCAGGCATGATAACAGGATGAAACTAATGTTCTCTTGTTAATGGGAGTGTAATTGAAAGTTTGTCTGTTTGTTTGTTTGTTTTTTTCTCAGTGTTTTACTCAGTCTCTGATTAATTCGTTTTTTCCCCTCTTCATCGTCTGCTAATTATTCTGCCACTTTTTTCTGCCGTCTTCTACTTCACATGGGATCGGGGTTTGTTTGTTTTCCTTGTTCGTTTAGATTTAGTTGTTTATTCATGATAGAATT]

[+] EMBL BM594363             [CCGGATCTTTCTTTCTTTTTCTTTTCTTTTTTTCTTTTTTTTTGTATGAGTTTTTGCTTTGCTTGTTTAGCTTTGTTCTCGTTTATCCGTTCGTCGTTGGCCGATTTCCTTTGCAGTGCATTATGTTGTCGGGTACCGTTTTGTTCCGTTTGTTCGATTCGAGTTCGAGTTTAGTATGTTGGGTGTGTTGTGGGATAACGCGGGATAAATAAAAATGCCAATCCAAAACAACTGTGAAACTGAACGCTAAGAAAGCGAGCGAATGAAACAAAGCCGTTCACTACTACAGGTTCCGTCCAAGCACTAAACATACACTAAAGTGAGACAGTGAGAGTTTATGGTAGAGTTGTATTGAAACATAATCCGGTTTATTTTTCATCTTTCTTACTTAGATAATGCGCTCGCAGTGGGAGGGAGCGCCCATGGTTTTGCTGCCGTGCTGCAGGCATGATAACAGGATGAAACTAATGTTCTCTTGTTAATGGGAGTGTAATTGAAAGTTTGTCTGTTTGTTTGTTTGTTTTTTTCTCAGTGTTTTACTCAGTCTCTGATTAATTCGTTTTTTCCCCTCTTCATCGTCTGCTAATTATTCTGCCACTTTTTTCTGCCGTCTTCTACTTCACATGGGATCGGGGTTTGTTTGTTTTCCTTGTTCGTTTAGATTTAGTTGTTTATTCATGATAGAATT]


>consensus_8899#3 CCGGATCTTTCTTTCTTTTTCTTTTCTTTTTTTCTTTTTTTTTGTATGAGTTTTTGCTTT GCTTGTTTAGCTTTGTTCTCGTTTATCCGTTCGTCGTTGGCCGATTTCCTTTGCAGTGCA TTATGTTGTCGGGTACCGTTTTGTTCCGTTTGTTCGATTCGAGTTCGAGTTTAGTATGTT GGGTGTGTTGTGGGATAACGCGGGATAAATAAAAATGCCAATCCAAAACAACTGTGAAAC TGAACGCTAAGAAAGCGAGCGAATGAAACAAAGCCGTTCACTACTACAGGTTCCGTCCAA GCACTAAACATACACTAAAGTGAGACAGTGAGAGTTTATGGTAGAGTTGTATTGAAACAT AATCCGGTTTATTTTTCATCTTTCTTACTTAGATAATGCGCTCGCAGTGGGAGGGAGCGC CCATGGTTTTGCTGCCGTGCTGCAGGCATGATAACAGGATGAAACTAATGTTCTCTTGTT AATGGGAGTGTAATTGAAAGTTTGTCTGTTTGTTTGTTTGTTTTTTTCTCAGTGTTTTAC TCAGTCTCTGATTAATTCGTTTTTTCCCCTCTTCATCGTCTGCTAATTATTCTGCCACTT TTTTCTGCCGTCTTCTACTTCACATGGGATCGGGGTTTGTTTGTTTTCCTTGTTCGTTTA GATTTAGTTGTTTATTCATGATAGAATT



consensusID : consensus_8899#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 579
fasta sequence
                              [AATCCCCGAGGTTNGAAAGAGCGTGCAACACTATCGCGGTGAGTGTGCGTGTGCACTACGGTGTTGCTTAGCCACTTAACGAGATTAAGTGTAATTTACACAACAAAACACAAGCTCAAATCACATACTTTCTCGCTCGCACAGCACGATAAGGTAGTGTTCCGCGTTGTGACTCTCCCGCGTTCCAAGCAAGATCATGGCACTTCAGCTGCCTGACAGCTCGAAGCCCTCAATCCAGCCTGTTGAGGGTTTCGAGGCTGCAATGTGGCAGATGGGGAGAAAAACCGAAGGAACACGCACGGCACACTGTGTCTCGATCTAATCAAACAACAATCAATCCACAACATGACGCACACTTTCGCTGGGTTGTGCTTTTCCTTCGATTCGTTTGCTTACCATTCAGTTTAGAAGATCGCGCTATCTAACCGCTTGACGTACCCAATACCTTTTCGGTCGGTGGTTGATTCTTTTTTTGTTTTCTCTCGGGGGCATTCAATTTCCAATCCACCTCGCCAAAAGCTGCACCAAACAAAAATGGTGTCAAAGCAAATTATGAACATCACAGTAAAAATGTATGCG]

[+] EMBL AL694118             [AATCCCCGAGGTTNGAAAGAGCGTGCAACACTATCGCGGTGAGTGTGCGTGTGCACTACGGTGTTGCTTAGCCACTTAACGAGATTAAGTGTAATTTACACAACAAAACACAAGCTCAAATCACATACTTTCTCGCTCGCACAGCACGATAAGGTAGTGTTCCGCGTTGTGACTCTCCCGCGTTCCAAGCAAGATCATGGCACTTCAGCTGCCTGACAGCTCGAAGCCCTCAATCCAGCCTGTTGAGGGTTTCGAGGCTGCAATGTGGCAGATGGGGAGAAAAACCGAAGGAACACGCACGGCACACTGTGTCTCGATCTAATCAAACAACAATCAATCCACAACATGACGCACACTTTCGCTGGGTTGTGCTTTTCCTTCGATTCGTTTGCTTACCATTCAGTTTAGAAGATCGCGCTATCTAACCGCTTGACGTACCCAATACCTTTTCGGTCGGTGGTTGATTCTTTTTTTGTTTTCTCTCGGGGGCATTCAATTTCCAATCCACCTCGCCAAAAGCTGCACCAAACAAAAATGGTGTCAAAGCAAATTATGAACATCACAGTAAAAATGTATGCG]


>consensus_8899#4 AATCCCCGAGGTTNGAAAGAGCGTGCAACACTATCGCGGTGAGTGTGCGTGTGCACTACG GTGTTGCTTAGCCACTTAACGAGATTAAGTGTAATTTACACAACAAAACACAAGCTCAAA TCACATACTTTCTCGCTCGCACAGCACGATAAGGTAGTGTTCCGCGTTGTGACTCTCCCG CGTTCCAAGCAAGATCATGGCACTTCAGCTGCCTGACAGCTCGAAGCCCTCAATCCAGCC TGTTGAGGGTTTCGAGGCTGCAATGTGGCAGATGGGGAGAAAAACCGAAGGAACACGCAC GGCACACTGTGTCTCGATCTAATCAAACAACAATCAATCCACAACATGACGCACACTTTC GCTGGGTTGTGCTTTTCCTTCGATTCGTTTGCTTACCATTCAGTTTAGAAGATCGCGCTA TCTAACCGCTTGACGTACCCAATACCTTTTCGGTCGGTGGTTGATTCTTTTTTTGTTTTC TCTCGGGGGCATTCAATTTCCAATCCACCTCGCCAAAAGCTGCACCAAACAAAAATGGTG TCAAAGCAAATTATGAACATCACAGTAAAAATGTATGCG



consensusID : consensus_8899#5
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 444
fasta sequence
                              [CACATGCCTGCCCTTTGTTGTTNNATTTTTTGGTATGAGTTTTTGCTTTGCTTGTTTAGCTTTGTTCTCGTTTATCCGTTCGTCGTTGGCCGATTTCCTTTGCAGTGCATTATGTTGTCGGGTACCGTTTTGTTCCGTTTGTTCGATTCGAGTTCGAGTTTAGTATGTTGGGTGTGTTGTGGGATAACGCGGGATAAATAAAAATGCCAATCCAAAACAACTGTGAAACTGAACGCTAAGAAAGCGAGCGAATGAAACAAAGCCGTTCACTACTACAGGTTCCGTCCAAGCACTAAACATACACTAAAGTGAGACAGTGAGAGTTTATGGTAGAGTTGTATTGAAACATAATCCGGTTTATTTTTCATCTTTCTTACTTAGATTATGCGCTCGCAGTGGGAGGGAGCGCCCATGGTTTTGCTGCCGTGCTGCAGGCATGATAAC]

[+] EMBL BX466740             [CACATGCCTGCCCTTTGTTGTTNNATTTTTTGGTATGAGTTTTTGCTTTGCTTGTTTAGCTTTGTTCTCGTTTATCCGTTCGTCGTTGGCCGATTTCCTTTGCAGTGCATTATGTTGTCGGGTACCGTTTTGTTCCGTTTGTTCGATTCGAGTTCGAGTTTAGTATGTTGGGTGTGTTGTGGGATAACGCGGGATAAATAAAAATGCCAATCCAAAACAACTGTGAAACTGAACGCTAAGAAAGCGAGCGAATGAAACAAAGCCGTTCACTACTACAGGTTCCGTCCAAGCACTAAACATACACTAAAGTGAGACAGTGAGAGTTTATGGTAGAGTTGTATTGAAACATAATCCGGTTTATTTTTCATCTTTCTTACTTAGATTATGCGCTCGCAGTGGGAGGGAGCGCCCATGGTTTTGCTGCCGTGCTGCAGGCATGATAAC]


>consensus_8899#5 CACATGCCTGCCCTTTGTTGTTNNATTTTTTGGTATGAGTTTTTGCTTTGCTTGTTTAGC TTTGTTCTCGTTTATCCGTTCGTCGTTGGCCGATTTCCTTTGCAGTGCATTATGTTGTCG GGTACCGTTTTGTTCCGTTTGTTCGATTCGAGTTCGAGTTTAGTATGTTGGGTGTGTTGT GGGATAACGCGGGATAAATAAAAATGCCAATCCAAAACAACTGTGAAACTGAACGCTAAG AAAGCGAGCGAATGAAACAAAGCCGTTCACTACTACAGGTTCCGTCCAAGCACTAAACAT ACACTAAAGTGAGACAGTGAGAGTTTATGGTAGAGTTGTATTGAAACATAATCCGGTTTA TTTTTCATCTTTCTTACTTAGATTATGCGCTCGCAGTGGGAGGGAGCGCCCATGGTTTTG CTGCCGTGCTGCAGGCATGATAAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8899#1      CCGGGCAACTAAGGCAACTACTACAACAGGCGAGATGTAATTGTTCGATGAAAATGTGTA 60
consensus_8899#4      ------------------------------------------------------------
consensus_8899#0      ------------------------------------------------------------
consensus_8899#2      ------------------------------------------------------------
consensus_8899#3      ------------------------------------------------------------
consensus_8899#5      ------------------------------------------------------------
                                                                                  

consensus_8899#1      CTTTATGAAAGTAACGAAACAACCGTTACCGCTTATTCCATTTTATCCCCAAATTTAGTG 120
consensus_8899#4      ------------------------------------------------------------
consensus_8899#0      ----------------------------------------------------CCGCCCAC 8
consensus_8899#2      ------------------------------------------------------------
consensus_8899#3      ------------------------------------------------------------
consensus_8899#5      ------------------------------------------------------------
                                                                                  

consensus_8899#1      ATTTAATGTGTGATTCAACGTATGCATGTTACTATACTATAACAAACAAACAAAACAAGC 180
consensus_8899#4      ------------------------------------------------------------
consensus_8899#0      GCGTCCGGTGTGATTCAACGTATGCATGTTACTATACTATAACAAACAAACAAAACAAGC 68
consensus_8899#2      -------------------------------------------------ATCGCCGAGGT 11
consensus_8899#3      ------------------------------------------------------------
consensus_8899#5      ------------------------------------------------------------
                                                                                  

consensus_8899#1      GCACTCTATCACAATCTATCCG-CGAAGAGCGTGCAACACTATCGCGGTGAGTGTTC--- 236
consensus_8899#4      ------AATCCCCGA--GGTTN-GAAAGAGCGTGCAACACTATCGCGGTGAGTGTGCGTG 51
consensus_8899#0      GCACTCTATCACAATCTATCCGCGAAAGAGCGTGCAACACTATCGCGGTGAGTGTGCGTG 128
consensus_8899#2      TTTTTTGTTTTCTCTCGGGGCG-CATTCAATTTCCAAT-CCACCTCGCCAAAAGCTGCAC 69
consensus_8899#3      ------------------------------------------CCGGATCTTTCTTTCTTT 18
consensus_8899#5      -----------------------------------------------------CACATGC 7
                                                                                  

consensus_8899#1      ---ACTACGGTGTTGCTTAGCCACTTAACGAGATTAAGTGTAATT---TACACAACAAAA 290
consensus_8899#4      TGCACTACGGTGTTGCTTAGCCACTTAACGAGATTAAGTGTAATT---TACACAACAAAA 108
consensus_8899#0      TGCACTACGGTGTTGCTTAGCCACTTAACGAGATTAAGTGTAATT---TACACAACAAAA 185
consensus_8899#2      CAAACAAAAATGGTGTCAAAGCAAATTATGAAATCAAGTAAAAATGTATGCGCAACTTAC 129
consensus_8899#3      TTCTTTTCTTTTTTTCTTTTTTTTTGTATGAGTTTTTGCTTTGCT---TGTTTAGCTTTG 75
consensus_8899#5      CTGCCCTTTGTTGTTNNATTTTTTGGTATGAGTTTTTGCTTTGCT---TGTTTAGCTTTG 64
                                *  *             * **  *   *      *   *    * *    

consensus_8899#1      CACAAGCTCA-AATCACGT----ACTTTCTCGCTCGCACAGCACGGT----ACGGT---- 337
consensus_8899#4      CACAAGCTCA-AATCACAT----ACTTTCTCGCTCGCACAGCACGAT----AAGGTAGTG 159
consensus_8899#0      CACAAGCTCA-AATCACGT----ACTTTCTCGCTCGCACAGCACGGT----ACGGT---- 232
consensus_8899#2      AGTGAAATTACAATTATGTGAG-AATTTGCTTATCCCAAAGCATCATCTCCATGGTGACG 188
consensus_8899#3      TTCTCGTTTATCCGTTCGTCGTTGGCCGATTTCCTTTGCAGTGCATT----ATGTTGTCG 131
consensus_8899#5      TTCTCGTTTATCCGTTCGTCGTTGGCCGATTTCCTTTGCAGTGCATT----ATGTTGTCG 120
                             * *        *                    **     *    * * *    

consensus_8899#1      ----------TGTGACTCTCCCGTGTTCCACGCAAGATCATGGCACTACAGCTGCCTGAC 387
consensus_8899#4      TTC--CGCGTTGTGACTCTCCCGCGTTCCAAGCAAGATCATGGCACTTCAGCTGCCTGAC 217
consensus_8899#0      ----------TGTGACTCTCCCGTGTTCCACGCAAGATCATGGCACTACAGCTGCCTGAC 282
consensus_8899#2      AACATCGCTTCACGATTTACACATGTTT-GTGTATGAATA-ACAACCACAAACGGATCAA 246
consensus_8899#3      GGTACCGTTTTGTTCCGTTTGTTCGATTCGAGTTCGAGTTTAGTATGTTGGGTGTGTTGT 191
consensus_8899#5      GGTACCGTTTTGTTCCGTTTGTTCGATTCGAGTTCGAGTTTAGTATGTTGGGTGTGTTGT 180
                                              * *    *   **       *        *  *   

consensus_8899#1      AGCTCGAAGCCCTCAACTCCAGCCTGTTGAGGGTTTCGAGGCTGCAATGTGGCAGATAGG 447
consensus_8899#4      AGCTCGAAGCCCTCAA-TCCAGCCTGTTGAGGGTTTCGAGGCTGCAATGTGGCAGATGGG 276
consensus_8899#0      AGCTCGAAGCCCTCAACTCCAGCCTGTTGAGGGTTTCGAGGCTGCAATGTGGCAGATAGG 342
consensus_8899#2      TGGAAAAGACGCTCAACACGTGCC-GTCTCATGTTGTGTGGTGTGAGTGTGT--AGCGGG 303
consensus_8899#3      GGGATAACGCGGGATAAATAAAAATGCCAATCCAAAACAACTGTGAAACTGAACGCTAAG 251
consensus_8899#5      GGGATAACGCGGGATAAATAAAAATGCCAATCCAAAACAACTGTGAAACTGAACGCTAAG 240
                       *    *  *     *         *                   *   **        *

consensus_8899#1      GAGACACA-------AAC-CGCACGGCACACTGTGCCTCGATCTAATCAACCAACAATCA 499
consensus_8899#4      GAGAAAAACCGAAGGAACACGCACGGCACACTGTGTCTCGATCTAATCAAACAACAATCA 336
consensus_8899#0      GAGACACA-------AAC-CGCACGGCACACTGTGTCTCGATCTAATCAAACAACAATCA 394
consensus_8899#2      AAAACATT--------AT-GGTATAATACAAAGAAAATAA---TAATGCGACAGCAAACT 351
consensus_8899#3      AAAGCGAG-----------CGAATGAAACAAAGCCGTTCA-----CTACTACAGGTTCCG 295
consensus_8899#5      AAAGCGAG-----------CGAATGAAACAAAGCCGTTCA-----CTACTACAGGTTCCG 284
                       *                  * *    ***  *    *        *    **     * 

consensus_8899#1      ATCCACAACATGACGCACACTTAA-GCTGGGTTGTGCTTTTCCGTCGATTCGTTTGCTTA 558
consensus_8899#4      ATCCACAACATGACGCACACTTTC-GCTGGGTTGTGCTTTTCCTTCGATTCGTTTGCTTA 395
consensus_8899#0      ATCCACAACATGGCGCACACTTTAAGCTGGGTTGTGCTTTTCCATAGGTTCGTTTGCTTA 454
consensus_8899#2      CTATATAATAAATTG-GCGCAAGA-GGGCGGTAGTGATTTGTTTACACTTTACAAGAACA 409
consensus_8899#3      TCCAAGCACTAAACATACACTAAA-GTGAGACAGTGAGAGTTTATGGTAGAGTTGTATTG 354
consensus_8899#5      TCCAAGCACTAAACATACACTAAA-GTGAGACAGTGAGAGTTTATGGTAGAGTTGTATTG 343
                          *  *         * *     *   *   ***                        

consensus_8899#1      CCATTCAGTTTAGAAGATCGCGCTATATAACCGCTTGACCGTACCCAATACCTTTTCGGT 618
consensus_8899#4      CCATTCAGTTTAGAAGATCGCGCTATCTAACCGCTTGAC-GTACCCAATACCTTTTCGGT 454
consensus_8899#0      CCATTCAGTTTAGAAGATCGCGCTATCTAACCGCTCGACCGTACCCAATACCTTTTCGGT 514
consensus_8899#2      AGGCNAAAGCGGAAACATGG-ACAATTCTATCA-TGAATAAACTACTAAATCTAAACGAA 467
consensus_8899#3      AAACATAATCCGGTTTATTTTTCATCTTTCTTACTTAG------ATAATGCGCTCGCAGT 408
consensus_8899#5      AAACATAATCCGGTTTATTTTTCATCTTTCTTACTTAG------ATTATGCGCTCGCAGT 397
                            *         **    *           *            *        *   

consensus_8899#1      CGGTGGTTGATT---CTTTTTTTGTTTTCTCTCGGGGGCATTCAATTTCCAATCCACCTC 675
consensus_8899#4      CGGTGGTTGATT---CTTTTTTTGTTTTCTCTCGGGGGCATTCAATTTCCAATCCACCTC 511
consensus_8899#0      CGGTGGTTGATT---ATTTTTT-GTTTTCTCTCGGGGGCATTCAATTTCCAATCCACCTC 570
consensus_8899#2      CAAGGAACAAACAAACACGATCCATGTGAAGTAGAAGACGGCAGAAAAAAAACAAGTGTC 527
consensus_8899#3      GGGAGGGAGCGCCCATGGTTTTGCTGCCGTGCTGCAGGCAT--GATAACAGGATGAAACT 466
consensus_8899#5      GGGAGGGAGCGCCCATGGTTTTGCTGCCGTGCTGCAGGCAT--GATAAC----------- 444
                          *               *   *        *  * *     *               

consensus_8899#1      GCCAAAAGCTGCACCAAACAAAAATGGTGGCAAAGCAAATTTAAGAAACCA-AGCAAAAA 734
consensus_8899#4      GCCAAAAGCTGCACCAAACAAAAATGGTGTCAAAGCAAATTATGAACATCACAGTAAAAA 571
consensus_8899#0      GCCAAAAC------------AGAATGGTGGCAAAGCAAATTTAAGAAACCA-AGCAAAAA 617
consensus_8899#2      AGAATAATTAGCAGACGACTGAAGAGG-GGNANAAAAAACGACATTAATCAGAG-ACTGA 585
consensus_8899#3      AATGTTCTCTTGTTAATGGGAGTGTAATTGAAAGTTTGTCTGTTTGTTTGTTTGTTTTTT 526
consensus_8899#5      ------------------------------------------------------------
                                                                                  

consensus_8899#1      TGTATGCGTAACTTACAGTGAAATTACAATTATGTGAGGATTTGCTTGTTAAACAG--CA 792
consensus_8899#4      TGTATGCG---------------------------------------------------- 579
consensus_8899#0      TATATGCGCAACTTACAGTGAAATTACAATTATGTGAGAATTTGCTTATCCCAAAG--CA 675
consensus_8899#2      CGTAAAAGACCACTGGAG-GAACACAGAAAGAAGCAANAGCAAACAAAACAGACAA--AG 642
consensus_8899#3      TCTCAGTGTTTTACTCAGTCTCTGATTAATTCGTTTTTTCCCCTCTTCATCGTCTGCTAA 586
consensus_8899#5      ------------------------------------------------------------
                                                                                  

consensus_8899#1      TCATCTCCATGGTGACGAACATCGCTTCACGATTTACACATGCTTGTGTATGAATAATAA 852
consensus_8899#4      ------------------------------------------------------------
consensus_8899#0      TCATCTCCATGGTGACGAACATCGCTTCACGATTTACACATGTTTGTGTATGAATAACAA 735
consensus_8899#2      CTGTN-CAATGATGACACTCCCATTCACAAGATA-ACATCAGGCNGCATCCGTGGGATCA 700
consensus_8899#3      TTATTCTGCCACTTTTTTCTGCCGTCTTCTACTTCACATGGGATCGGGGTTTGTTTGTTT 646
consensus_8899#5      ------------------------------------------------------------
                                                                                  

consensus_8899#1      CCACAAACGGATCAATGGAAAAGACGCTCAACACGTGCCGTCTCATGTTGTGTGGTGAGT 912
consensus_8899#4      ------------------------------------------------------------
consensus_8899#0      CCACAAACGGATCAATGGAAGAGACGCTCAACACGTGCCGTCTCATGTTGTGTGGTGAGT 795
consensus_8899#2      CGGCCAGCAGCACGGCGAGCAAAAACCACGGGACGCTCCTC------------------- 741
consensus_8899#3      TCCTTGTTCGTTTAGATTTAGTTGTTTATTCATGATAGAATT------------------ 688
consensus_8899#5      ------------------------------------------------------------
                                                                                  

consensus_8899#1      GAGTG------------------------------------------------------- 917
consensus_8899#4      ------------------------------------------------------------
consensus_8899#0      GAGTGTGTAGCGAGAAAACATTATGGTATAATACAACAAAAAATAATAATGCGACAGCAA 855
consensus_8899#2      ------------------------------------------------------------
consensus_8899#3      ------------------------------------------------------------
consensus_8899#5      ------------------------------------------------------------
                                                                                  

consensus_8899#1      ------------------------------------------------------------
consensus_8899#4      ------------------------------------------------------------
consensus_8899#0      ACTCTATATAATAAATTGGCGCAAGAGGGCGGTAGTGATTTGTTTACACTTTACAAGAAC 915
consensus_8899#2      ------------------------------------------------------------
consensus_8899#3      ------------------------------------------------------------
consensus_8899#5      ------------------------------------------------------------
                                                                                  

consensus_8899#1      ------------------
consensus_8899#4      ------------------
consensus_8899#0      AAGGCAAAGCGGAAACAT 933
consensus_8899#2      ------------------
consensus_8899#3      ------------------
consensus_8899#5      ------------------
                                        




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)