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Anopheles gambiae
cluster # 8909 cluster # 8909       Sequences # 13       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8909#0 length = 1810 sequences # 11  
consensus_8909#1 length = 860 sequences # 1  
consensus_8909#2 length = 792 sequences # 1  

consensusID : consensus_8909#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 1810
fasta sequence
                              [CCGCCGATTTCGGGTTCGCCCGGGTGCTGAAAGAGGGCGAAAAACTGTATGATCTCTGTGGAACTCCTGGATATTTGGCACCGGAAACATTAAAGTGCAACATGTTCGAGGATGCGCCAGGATACTCGAAGGAGGTGGACATATGGGCCTGCGGCGTGATCATGTTCACGCTACTGGTCGGCTGTCCACCGTTCTGGCATCGGAAGCAGATGGTAATGCTGCGTAACATCATGGAAGGCAAATACAGCTTCACCTCCCCGGAGTGGGCTGACATTTCAGAGGATCCCAAGGACCTGATACGCAAATGCCTGGTGGTTGACCCATCAAAGCGAATCACAGTCACGGAAGCGTTGAAGCATCCCTTCTTCAACACAGTTCTTTTCGAGCAAGACATTGGACCTCTGAAACGGAGCCTTTCGGTTAAATCGAGACGCTTCAGTCGCATTGCTGACCTCGCACTGTTGCGTAAGCAAAGTCAGTTCAACGCTAGGAAGAAGTTTCAGTTTGCTATACTGTGTGTACGCGCTATGATCCGGATCAAGAGGCTACGGTACACGCCGGAACCGCTGCGCGTCGAGGATGCGCTCAGAGACCCGTACCGCGTCAAGGTGCTGCGCAAGGTCATCGATGGATGTGCATTTCGAGTGTATGGCCACTGGGTCAAGAAGGGCGAGGGTCAAAACCGGGCCGCCCTGTTCGAGAATACGCCTCGATGCGAGGTTTATAATCTTTATATCAACAGCCTTAATCGATAGGCTGTAGAGGTGCGCAAGCTCGCTACTGCTGTTGCTGCTGCCGCCCGTTACGATGCGCGGGACCATCAATTCGCGGCTGGAATCAATCGGAGAGGAAGGCGCTAGATCAATGATTAGGTGGCGCACGGTGGTGTGCAACGCTCGGTGAAAAAATGAACGCTTGCACGCAGCAATAACCATGGCAGCATTAGGAGAATGTCGTCCGTTGCAGTCGCGATTTGGTCGCGATCGTCTCCACACGTTAAACGCTGCTCGCAATAAGTTCGATAAGCAATCCTAGAGTGTAGCGCGCATGATCACAGCGATCAGCGTTTGCGTTGGCAGGATCAGTTTCATCAACCTTAGCTA-CCTACTTAAACATTCATCCATCCGACACTGCATCCACGTAATATGATTCCTGTTTCA-TCTCACATGGCCCCAT--CCCC---CCCC----TCCCTTTCTCCTCCCCTGTTTAGTGTGCACTACAAATAGTTAAAGAGGAGAAACGACTGTTTCTCGTTAGCATAGTAAATTTAACAGCTAGAATTTACCCTGCAACCTCCTACTACCTAGGTGGCTATGGCTGCAGAACAAAACAATGCAGCAGGACTGGACTAATGCAGGCAGCACAAGCGATCATTCGTCGGACAGACATAGAAAGCAAAGCAATGAGAACAGAAGAGTGAGGGAGGTTCACGTGATTATGCTGTGTAAAGGAGGTGCAGGCAACGGGAAAAGGAAGGATCTGCTTCTGAGAAGATGATATTAAGTTTTTCGCC-TTTTTTGTTTTTTTTTTATACAACCATAGCTATGTACACTACTGTTAATAATAAGTAAGAAGAGGTAATATACGTATGAACCAAATGACAAAAATGAGACACTCTTGTTTGTTACACATTGTGGGCGCATTGAGCATTGCAATGTACGTTACAAGGACGGTAAACGACGAACCCTAATGAAGGGTACAGTGAAACAGAGAAGCGTTTTTCATTTCCTATTGTTTTGTATTAAGGTTATAAACAAAAATAGTAACTAAATAAATCGTGCTACTTACTGTAGTAAATTAGTTACATTAGTCG]

[+] EMBL BM577357             [CCGCCGATTTCGGGTTCGCCCGGGTGCTGAAAGAGGGCGAAAAACTGTATGATCTCTGTGGAACTCCTGGATATTTGGCACCGGAAACATTAAAGTGCAACATGTTCGAGGATGCGCCAGGATACTCGAAGGAGGTGGACATATGGGCCTGCGGCGTGATCATGTTCACGCTACTGGTCGGCTGTCCACCGTTCTGGCATCGGAAGCAGATGGTAATGCTGCGTAACATCATGGAAGGCAAATACAGCTTCACCTCCCCGGAGTGGGCTGACATTTCAGAGGATCCCAAGGACCTGATACGCAAATGCCTGGTGGTTGACCCATCAAAGCGAATCACAGTCACGGAAGCGTTGAAGCATCCCTTCTTCAACACAGTTCTTTTCGAGCAAGACATTGGACCTCTGAAACGGAGCCTTTCGGTTAAATCGAGACGCTTCAGTCGCATTGCTGACCTCGCACTGTTGCGTAAGCAAAGTCAGTTCAACGCTAGGAAGAAGTTTCAGTTTGCTATACTGTGTGTACGCGCTATGATCCGGATCAAGAGGCTACGGTACACGCCGGAACCGCTGCGCGTCGAGGATGCGCTCAGAGACCCGTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BM604224             [                                                                                                         cCGAGGATGCGCCAGGATACTCGAAGGAGGTGGACATATGGGCCTGCGGTGTGATCATGTTCACGCTACTGGTCGGCTGTCCACCGTTCTGGCATCGGAAGCAGATGGTAATGCTGCGTAACATCATGGAAGGCAAATACAGCTTCACCTCCCCGGAGTGGGCTGACATTTCAGAGGATCCCAAGGACCTGATACGCAAATGCCTGGTGGTTGACCCATCGAAGCGAATCACAGTCACGGAAGCGTTGAAGCATCCCTTCTTCAACACAGTTCTTTTCGAGCAAGACATTGGACCTCTGAAACGGAGCCTTTCGGTTAAATCGAGACGCTTCAGTCGCATTGCTGACCTCGCACTGTTGCGTAAGCAAAGTCAGTTCAACGCTAGGAAGAAGTTTCAGTTTGCTATACTGTGTGTACGCGCTATGATCCGGATCAAGAGGCTACGGTACACGCCGGAACCGCTGCGCGTCGAGGATGCGCTCAGAGACCCGTACCGCGTCAAGGTGCTGCGCAAGGTCATCGATGGATGTGCATTTCGAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BX629087             [                                                                                                                                                                                                                                                                                                                                                                                                                                                          CATTGCTGACCTCGCACTGTTGCGTAAGCAAAGTCAGTTC CCGCTANGAATAAGTTTCAGNTTGCTATACTGTGTGTACGCGCTATGATCCGGATCAAGAGGCTACNGTACACGCCGGANCCGCTGCGCGTCAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BX616076             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GTCAGTTCAACGCTAGGAAGAAGTTTCAGTTTGCTATACTGTGTGTACGCGCTATGATCCGGATCAAGAGGCTACGGTACACGCCGGAACCGCTGCGCGTCGAGGATGCGCTCCGAGATCCGTACCGCGTCAAGGTGCTGCGCAAGGTCATCGATGGATGTGCATTTCGAGTGTATGGCCACTGGGTCAAGAAGGGCGAGGGTCAAAACCGGGCCGCCCTGTTCGAGAATACGCCTCGATGCGAGGTTTATAATCTTTATATCAACAGCCTTAATCGATAGGCTGTAGAGGTGCGCAAGCTCGCTACTGCTGTTGCTGCTGCCGCCCGTTACGATGCGCGGGACCATCAATTCGCGGCTGGAATCAATCGGAGAGGAAGGCGCTAGATCAATGATTAGGTGGCGCACGGTGGTGTGCAACGCTCGGTGAAGATTTGAACGCTTGCACGCAGCAATAACCATGGTAGCATTAGGAGAATGTCGTCCGTTGCAGTCGCGATTTGGTCGCGATCGTCTCCACACGCTAAACGCTGCTCGCAATAAGTTCGATAAGCAATCCTAGGGTGTAGCGCGCATGATCATAGCGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BX616857             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TCTTTATATCAACAGCCTTAATCGATAGGCTGTAGAGGTGCGCAAGCTCGCTACTGCTGTTGCTGCTGCCGCCCGTTACGATGCGCGGGACCATCAATTCGCGGCTGGAATCAATCGGAGAGGAAGGCGCTAGATCAATGATTAGGTGGCGCACGGTGGTGTGCAACGCTCGGTGAAGATTTGAACGCTTGCACGCAGCAATAACCATGGCAGCATTAGGAGAATGTCGTCCGTTGCAGTCGCGATTTGGTCGCGATCGTCTCCACACGCTAAACGCTGCTCGCAATAAGTTCGATAAGCAATCCTAGGGTGTAGCGCGCATGATCATAGCGATCAGCGTTTGCGTTGGCAGGATCAGTTTCATCAACCTTAGCTA CCTACTTAAACATTCATCCATCCGACACTGCATCCACGTAATATGATTCCTGTTTCA TCTCACATGGCCCCTC  CCCCCCACCCC    TCCCTTTCTCCTCCCCTGTTTAGTGTGCACTACAAATAGTGAAAGAGGAGAGACGTCTGTTTCTCGTTAGCATAGTAAATTTAAAAGCTAGAATTTACCCTGCAACCTCCTACGACCTAGGTGGCTATGGTTGCAGAACAAAACAATGCAACAGGACTGGACTAATGATGGCAGCACAAGCGATCATTCGTCGGACAGACATAGAAAGCAAAGCAATGAGAACAGAAGAGTGAGGGAGG                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BM630976             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ccgGGTGCACAAGCTCGCTACTGCTGTTGCTGCTGCCGCCCGTTGCGATGCGCGGGACCATCAATTCGCGGCTGGAATCAATCTGAGAGGAAGGCGCTAGATCA      AGGTGGCGCACGGTGGTGTGCAACGCTCGGTGAAAAAATGAACGCTTGCACGCAGCAATAACCATGGCAGCATTAGGAGAATTGCGTCCGTTGCAGTCGCGATTTGGTCGCGATCGTCTCCACACGTTAAACGCTGCTCGCAATAAGTTCGATAAGCAATCCTAGAGTGTAGCGCGCATGATCACAGCGATCAGCGTTTGCGTTGGCAGGATCAGTTTCATCAACCTTAGCTACCCTACTTAAACATTCATCCATCCGACACTGCATCCACGTAATATGATTCCTGTTGCATTCTCACATGGCCCCAT  CCCC   CCCC    TCCCCTTCTCCTCCCCTGTCTAGTGTGCACTACAAATAGTTAAAGAGGAGAAACGACTGTTTCTCGTTAGTATAGTAAATTTAACAGCTAGAATTTACCCTGCAACCTCCTACTACCTAGGTGGCTATGGCTGCAGAACAAAACAATGCAGCAGGACTGGACTAATGCAGGCAGCACAAGCGATCATTCGTCGGACAGACATAGAAAGCAAAGCAATGAGAACAGAAGAGTGAGGGAGGTTCACGTGATTATGCTGTGTAAAG                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BX614818             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CGCGGGACCATCAATTCGCGGCTGGAATCAATCGGAGAGGAAGGCGCTAGATCAAGGATTAGGTGGCGCACGGTGGTGTGCAACGCTCGGTGAAAAAATGAACGCTTGCACGCAGCAATAACCATGGCAGCATTAGGAGAATTGCGTCCGTTGCAGTCGCGATTTGGTCGCGATCGTCTCCACACGTTAAACGCTGCTCGCAATAAGTTCGATAAGCAATCCTAGAGTGTAGCGCGCATTATCACAGCGATCAGCGTTTGCGTTGGCAGGATCAGTTTCATCAACCTTAGCTA CCTACTTAAACATTCATCCATCCGACACTGCATCCACGTAATATGATTCCTGTTTCA TCTCACATGGCCCCAT  CCCC   CCCCCCCTTCCCTTTCTCCTCCCCTGTTTAGTGTGCACTACAAATAGTTAAAGAGGAGAAACGACTGTTTCTCGTTAGCATAGTAAATTTAACAGCTAGAATTTACCCTGCAACCTCCTACTACCTAGTTGGCTATGGCTGCAGAACAAAACAATGCAGCAGGACTGGACTAATGCAGGCAGCACAAGCGATCATTCGTCGGACAGACAT    AGCAAAGCAATGAGAACCGAAGAGTGAGGGAGGTTCACGTGATTATGCTGTGTAAAGGAGGTGCAGGCAACGAGAAAAGGAAGGATCTG                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BX628423             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ACGCTCGGTGAAAAAATGAACGCTTGCACGCAGCAATAACCATGGCAGCATTAGGAGAATGTCGTCCGTTGCAGTCGCGATTTGGTCGCGATCGTCTCCACACGTTAAACGCTGCTCGCAATAAGTTCGATAAGCAATCCTAGAGTGTAGCGCGCATGATCACAGCGATCAGCGTTTGCGTTGGCAGGATCAGTTTCATCAACCTTAGCTACCCTACTTAAACATTCATCCATCCGACACTGCATCCACGTAATATGATTCCTGTTTCA TCTCACATGGCCCCATCCCCCC   CCCC    TCCCCTTCTCCTCCCCTGTCTAGTGTGCACTACAAATAGTTAAAGAGGAGAAACGACTGTTTCTCGTTAGCATAGTAAATTTAACAGCTAGAATTTACCCTGCAACCTCCTACTACCTAGGTGGCTATGGCTGCAGAACAAAACAATGCAGCAGGACTGGACTAATGCAGGCAGCACAAGCGATCATTCGTCGGACAGACATAGAAAGCAAAGCAATGAGAACAGAAGAGTGAGGGAGGTTCACGTGATTATGCTGTGTAAAGGAGGTGCAGGCAACGGGAAAAGGAAGGATCTGCTTCTGAGAAGATGATATTAAGTTTTTCGCC TTTTTTG TTTTTTTTTATACAACCATAGCTATGTACACTACT                                                                                                                                                                                                                                                                 ]
[+] EMBL BX618883             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CGCGATTTGGTCGCGATCGTCTCCACACGTTAAACGCTGCTCGCAATAAGTTCGATAAGCAATCCTAGAGTGTAGCGCGCATGATCACAGCGATCAGCGTTTGCGTTGGCAGGATCAGTTTCATCAACCTTAGCTA CCTACTTAAACATTCATCCATCCGACACTGCATCCACGTAATATGATTCCTGTTTCA TCTCACATGGCCCCAT  CCCC   CCCCCCCTTCCCTTTCTCCTCCCCTGTTTAGTGTGCACTACAAATAGTTAAAGAGGAGAAACGACTGTTTCTCGTTAGCATAGTAAATTTAACATCTAGAATTTACCCTGCAACCTCCTACTACCTAGGTGGCTATGGCTGCAGAACAAAACAATGCAGCAGGACTGGACTAATGCAGGCAGCACAAGCGATCATTCGTCGGACAGACAT    AGCAAAGCAATGAGAACCGAAGAGTGAGGGAGGTTCACGTGATTATGCTGTGTAAAGGAGGTGCAGGCAACGAGAAAAGGAAGGATCTGCTTCTGAGAAGATGATATTAAGTTTTTCGCCTTTTTTTGTTTTTTTTTTtttt                                                                                                                                                                                                                                                                                       ]
[+] EMBL BM606988             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ccgCTGCATCCACGTAATATGATTCCTGTTTCA TCTCACATGGCCCCAT  CCCC   CCCC    TCCCCTTCTCCTCCCCTGTCTAGTGTGCACTACAAATAGTTAAAGAGGAGAAACGACTGTTTCTCGTTAGTATAGTAAATTTAACAGCTAGAATTTACCCTGCAACCTCCTACTACCTAGGTGGCTATGGCTGCAGAACAAAACAATGCAGCAGGACTGGACTAATGCAGGCAGCACAAGCGATCATTCGTCGGACAGACATAGAAAGCAAAGCAATGAGAACAGAAGAGTGAGGGAGGTTCACGTGATTATGCTGTGTAAAGGAGGTGCAGGCAACGGGAAAAGGAAGGATCTGCTTCTGAGAAGATGATATTAAGTTTTTCGCC TTTTTTGTTTTTTTTTTATACAACCATAGCTATGTACACTACTGTTAATAATAAGTAAGAAGAGGTAATATACGTATGAACCAAATGACAAAAATGAGACACTCTTGTTTGTTACACATTGTGGGCGCATTGAGCATTGCAATGTACGTTACAAGGACGGTAAACGACGAACCCTAATGAAGGGTACAGTGAAACAGAGAAGCGTTTTTCATTTCCTATTGTTTTGTATTAAGGTTATAAACAAAAATAGTAACTAAATAAATCGTGCTACTTACTGTAGTAAATTAGTTACATTAGTCG]
[+] EMBL BM644927             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ccgCTGGACTAATGCAGGCAGCACAAGCGATCATTCGTCGGACAGACATAGAAAGCAAAGCAATGAGAACAGAAGAGTGAGGGAGGTTCACGTGATTATGCTGTGTAAAGGAGGTGCAGGCAACGGGAAAAGGAAGGATCTGCTTCTGAGAAGATGATATTAAGTTTTTCGCC TTTTTTGTTTTTTTTTTATACAACCATAGCTATGTACACTACTGTTAATAATAAGTAAGAAGAGGTAATATACGTATGAACCAAATGACAAAAATGAGACACTCTTGTTTGTTACACATTGTGGGCGCATTGAGCATTGCAATGTACGTTACAAGGACGGTAAACGACGAACCCTAATGAAGGGTACAGTGAAACAGAGAAGCGTTTTTCATTTCCTATTGTTTTGTATTAAGGTTATAAACAAAAATAGTAACTAAATAAATCGTGCTACTTACTGTAGTAAATTAGTT          ]


>consensus_8909#0 CCGCCGATTTCGGGTTCGCCCGGGTGCTGAAAGAGGGCGAAAAACTGTATGATCTCTGTG GAACTCCTGGATATTTGGCACCGGAAACATTAAAGTGCAACATGTTCGAGGATGCGCCAG GATACTCGAAGGAGGTGGACATATGGGCCTGCGGCGTGATCATGTTCACGCTACTGGTCG GCTGTCCACCGTTCTGGCATCGGAAGCAGATGGTAATGCTGCGTAACATCATGGAAGGCA AATACAGCTTCACCTCCCCGGAGTGGGCTGACATTTCAGAGGATCCCAAGGACCTGATAC GCAAATGCCTGGTGGTTGACCCATCAAAGCGAATCACAGTCACGGAAGCGTTGAAGCATC CCTTCTTCAACACAGTTCTTTTCGAGCAAGACATTGGACCTCTGAAACGGAGCCTTTCGG TTAAATCGAGACGCTTCAGTCGCATTGCTGACCTCGCACTGTTGCGTAAGCAAAGTCAGT TCAACGCTAGGAAGAAGTTTCAGTTTGCTATACTGTGTGTACGCGCTATGATCCGGATCA AGAGGCTACGGTACACGCCGGAACCGCTGCGCGTCGAGGATGCGCTCAGAGACCCGTACC GCGTCAAGGTGCTGCGCAAGGTCATCGATGGATGTGCATTTCGAGTGTATGGCCACTGGG TCAAGAAGGGCGAGGGTCAAAACCGGGCCGCCCTGTTCGAGAATACGCCTCGATGCGAGG TTTATAATCTTTATATCAACAGCCTTAATCGATAGGCTGTAGAGGTGCGCAAGCTCGCTA CTGCTGTTGCTGCTGCCGCCCGTTACGATGCGCGGGACCATCAATTCGCGGCTGGAATCA ATCGGAGAGGAAGGCGCTAGATCAATGATTAGGTGGCGCACGGTGGTGTGCAACGCTCGG TGAAAAAATGAACGCTTGCACGCAGCAATAACCATGGCAGCATTAGGAGAATGTCGTCCG TTGCAGTCGCGATTTGGTCGCGATCGTCTCCACACGTTAAACGCTGCTCGCAATAAGTTC GATAAGCAATCCTAGAGTGTAGCGCGCATGATCACAGCGATCAGCGTTTGCGTTGGCAGG ATCAGTTTCATCAACCTTAGCTACCTACTTAAACATTCATCCATCCGACACTGCATCCAC GTAATATGATTCCTGTTTCATCTCACATGGCCCCATCCCCCCCCTCCCTTTCTCCTCCCC TGTTTAGTGTGCACTACAAATAGTTAAAGAGGAGAAACGACTGTTTCTCGTTAGCATAGT AAATTTAACAGCTAGAATTTACCCTGCAACCTCCTACTACCTAGGTGGCTATGGCTGCAG AACAAAACAATGCAGCAGGACTGGACTAATGCAGGCAGCACAAGCGATCATTCGTCGGAC AGACATAGAAAGCAAAGCAATGAGAACAGAAGAGTGAGGGAGGTTCACGTGATTATGCTG TGTAAAGGAGGTGCAGGCAACGGGAAAAGGAAGGATCTGCTTCTGAGAAGATGATATTAA GTTTTTCGCCTTTTTTGTTTTTTTTTTATACAACCATAGCTATGTACACTACTGTTAATA ATAAGTAAGAAGAGGTAATATACGTATGAACCAAATGACAAAAATGAGACACTCTTGTTT GTTACACATTGTGGGCGCATTGAGCATTGCAATGTACGTTACAAGGACGGTAAACGACGA ACCCTAATGAAGGGTACAGTGAAACAGAGAAGCGTTTTTCATTTCCTATTGTTTTGTATT AAGGTTATAAACAAAAATAGTAACTAAATAAATCGTGCTACTTACTGTAGTAAATTAGTT ACATTAGTCG



consensusID : consensus_8909#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 860
fasta sequence
                              [CCAGAATCCCCGAGGTTTAATTCAGTTTGCTATACTGTGTGTCGCGCTATGATCCGGATCAAGAGGCTACGTGTACACGCCGGAACCGCTGCGCGTCGAGGATGCGCTCAGAGACCCGTACCGCGTCAANGTGCTGCGCAAGGTCATCGATGGATGTGCATTTCGAGTGTACGTGCCACTGGGTCAAGAATGGCGAGGGTCAAAACCGGGCCGCCCTGTTCGAGAATACGCCTCGATGCGAGGTTTATAATCTTTATATCAACAGCCTTAATCGATAGTGCTGTAAGGAGGTGCGCAAGGCTCGCTACTGCTGTTGCTTGCTGCCGCCCGTTACGATGCGCGGGACCATCAATTCGCGGGTGGAATCNATCCGGACGAGCGAAGGCGCTAGATCAAGGANTTAGTGTGCGCACNGGTGGGTGTTGTCAACAGCTCGCGGTGAAAAAAATGAAACGCTTTGTCNAGCGGCNGCNATAACCATTGTGCNAGCATTATGAGNAATAAGGAGTCTGGCTGACANCATCNCCGCACTATTGNGGTCGCCGAACGGTTCTCCAACACGGTTNAAACGCCTNNTCGCCACGAAAGCGTACTCGCAGAAAGAGACAACGCCTCAGAAGATTGTGGNGCCGGCATGTATNCAACAGCATGGNATCAAACGCTCTTGCGANTTGGGGAGGGNCACAGGCTTNANCTCAAGACCCTANGAGGTANACAGCCAAATTAAACGCANTTTCATTCCAANCCCGGAANATCGTGGATNCCNCGGTATATGAATCCTGGTATCATCTCCACATTGGGCCCGNANCCCCAGCCCCCGCGCTCATCGNNCCCCGNTATGGGGAGAACACACACGCAGA]

[+] EMBL AL932519             [CCAGAATCCCCGAGGTTTAATTCAGTTTGCTATACTGTGTGTCGCGCTATGATCCGGATCAAGAGGCTACGTGTACACGCCGGAACCGCTGCGCGTCGAGGATGCGCTCAGAGACCCGTACCGCGTCAANGTGCTGCGCAAGGTCATCGATGGATGTGCATTTCGAGTGTACGTGCCACTGGGTCAAGAATGGCGAGGGTCAAAACCGGGCCGCCCTGTTCGAGAATACGCCTCGATGCGAGGTTTATAATCTTTATATCAACAGCCTTAATCGATAGTGCTGTAAGGAGGTGCGCAAGGCTCGCTACTGCTGTTGCTTGCTGCCGCCCGTTACGATGCGCGGGACCATCAATTCGCGGGTGGAATCNATCCGGACGAGCGAAGGCGCTAGATCAAGGANTTAGTGTGCGCACNGGTGGGTGTTGTCAACAGCTCGCGGTGAAAAAAATGAAACGCTTTGTCNAGCGGCNGCNATAACCATTGTGCNAGCATTATGAGNAATAAGGAGTCTGGCTGACANCATCNCCGCACTATTGNGGTCGCCGAACGGTTCTCCAACACGGTTNAAACGCCTNNTCGCCACGAAAGCGTACTCGCAGAAAGAGACAACGCCTCAGAAGATTGTGGNGCCGGCATGTATNCAACAGCATGGNATCAAACGCTCTTGCGANTTGGGGAGGGNCACAGGCTTNANCTCAAGACCCTANGAGGTANACAGCCAAATTAAACGCANTTTCATTCCAANCCCGGAANATCGTGGATNCCNCGGTATATGAATCCTGGTATCATCTCCACATTGGGCCCGNANCCCCAGCCCCCGCGCTCATCGNNCCCCGNTATGGGGAGAACACACACGCAGA]


>consensus_8909#1 CCAGAATCCCCGAGGTTTAATTCAGTTTGCTATACTGTGTGTCGCGCTATGATCCGGATC AAGAGGCTACGTGTACACGCCGGAACCGCTGCGCGTCGAGGATGCGCTCAGAGACCCGTA CCGCGTCAANGTGCTGCGCAAGGTCATCGATGGATGTGCATTTCGAGTGTACGTGCCACT GGGTCAAGAATGGCGAGGGTCAAAACCGGGCCGCCCTGTTCGAGAATACGCCTCGATGCG AGGTTTATAATCTTTATATCAACAGCCTTAATCGATAGTGCTGTAAGGAGGTGCGCAAGG CTCGCTACTGCTGTTGCTTGCTGCCGCCCGTTACGATGCGCGGGACCATCAATTCGCGGG TGGAATCNATCCGGACGAGCGAAGGCGCTAGATCAAGGANTTAGTGTGCGCACNGGTGGG TGTTGTCAACAGCTCGCGGTGAAAAAAATGAAACGCTTTGTCNAGCGGCNGCNATAACCA TTGTGCNAGCATTATGAGNAATAAGGAGTCTGGCTGACANCATCNCCGCACTATTGNGGT CGCCGAACGGTTCTCCAACACGGTTNAAACGCCTNNTCGCCACGAAAGCGTACTCGCAGA AAGAGACAACGCCTCAGAAGATTGTGGNGCCGGCATGTATNCAACAGCATGGNATCAAAC GCTCTTGCGANTTGGGGAGGGNCACAGGCTTNANCTCAAGACCCTANGAGGTANACAGCC AAATTAAACGCANTTTCATTCCAANCCCGGAANATCGTGGATNCCNCGGTATATGAATCC TGGTATCATCTCCACATTGGGCCCGNANCCCCAGCCCCCGCGCTCATCGNNCCCCGNTAT GGGGAGAACACACACGCAGA



consensusID : consensus_8909#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 792
fasta sequence
                              [TCCCTATGGCTCGATGCAGAATACCCGCGNTTAATTAGGAGAATGTNGTCCGCCGCAGTCGTTATTCTGGTCGCGATCGTCTACCACACGTTAAACGCTGCTACGCAATAAGTTCGATAAGCAATCCTAGAGTGTAGCTGCTGCATGATCACAGCTGATCAGCTGTATATGCGTATGTGCAGTGATCAGTTTCATCAACCTTAGCTACCCTACTTAAACATTCATACCATNCCTGACAACTGCATCCACGTAATAATGATTCCGTTGGGNAATATNCAAANTTCCTTTCAACAAATTGGGGCGCCCNCGAAATAACAGNANAAAGAAGGGGGGACACNCNCAGCCACGNTTATTANAACACCAACACCCCNCCANGGACCACNTAAAGAGATGGANNGAAAACNANATAAGAAAAAANAANGAAAAGNGAANCACACANAAAACTGACGAACANACGCGAAAACAAAGATNNTAACAACACGGTACATCNAAGNGAGGACGACCATNNAAGGGGGTANTANANAANCATNTNGNCGNAANNCNGCANCACNNCAAGNTANAGTGGAATACAGGNGNTNNCGNACCACGACCCCGACCGTGCCCGNCNGNCCGCCAACGNGCCAACGACTGNANANAGACTAGAAGAGCACAGGTATAAANGNCGANGGTANGTGGAGNCAAGTTACNGTTGTAGCGGACGAGANANAAGANAGAGTACNGTCGGCCGNNTAAAATGTCACCNGAGGACAAGGNGNTGNAGAANATGTAAATAGCGAGGTTTAGTCNCGTGTT]

[+] EMBL AL696470             [TCCCTATGGCTCGATGCAGAATACCCGCGNTTAATTAGGAGAATGTNGTCCGCCGCAGTCGTTATTCTGGTCGCGATCGTCTACCACACGTTAAACGCTGCTACGCAATAAGTTCGATAAGCAATCCTAGAGTGTAGCTGCTGCATGATCACAGCTGATCAGCTGTATATGCGTATGTGCAGTGATCAGTTTCATCAACCTTAGCTACCCTACTTAAACATTCATACCATNCCTGACAACTGCATCCACGTAATAATGATTCCGTTGGGNAATATNCAAANTTCCTTTCAACAAATTGGGGCGCCCNCGAAATAACAGNANAAAGAAGGGGGGACACNCNCAGCCACGNTTATTANAACACCAACACCCCNCCANGGACCACNTAAAGAGATGGANNGAAAACNANATAAGAAAAAANAANGAAAAGNGAANCACACANAAAACTGACGAACANACGCGAAAACAAAGATNNTAACAACACGGTACATCNAAGNGAGGACGACCATNNAAGGGGGTANTANANAANCATNTNGNCGNAANNCNGCANCACNNCAAGNTANAGTGGAATACAGGNGNTNNCGNACCACGACCCCGACCGTGCCCGNCNGNCCGCCAACGNGCCAACGACTGNANANAGACTAGAAGAGCACAGGTATAAANGNCGANGGTANGTGGAGNCAAGTTACNGTTGTAGCGGACGAGANANAAGANAGAGTACNGTCGGCCGNNTAAAATGTCACCNGAGGACAAGGNGNTGNAGAANATGTAAATAGCGAGGTTTAGTCNCGTGTT]


>consensus_8909#2 TCCCTATGGCTCGATGCAGAATACCCGCGNTTAATTAGGAGAATGTNGTCCGCCGCAGTC GTTATTCTGGTCGCGATCGTCTACCACACGTTAAACGCTGCTACGCAATAAGTTCGATAA GCAATCCTAGAGTGTAGCTGCTGCATGATCACAGCTGATCAGCTGTATATGCGTATGTGC AGTGATCAGTTTCATCAACCTTAGCTACCCTACTTAAACATTCATACCATNCCTGACAAC TGCATCCACGTAATAATGATTCCGTTGGGNAATATNCAAANTTCCTTTCAACAAATTGGG GCGCCCNCGAAATAACAGNANAAAGAAGGGGGGACACNCNCAGCCACGNTTATTANAACA CCAACACCCCNCCANGGACCACNTAAAGAGATGGANNGAAAACNANATAAGAAAAAANAA NGAAAAGNGAANCACACANAAAACTGACGAACANACGCGAAAACAAAGATNNTAACAACA CGGTACATCNAAGNGAGGACGACCATNNAAGGGGGTANTANANAANCATNTNGNCGNAAN NCNGCANCACNNCAAGNTANAGTGGAATACAGGNGNTNNCGNACCACGACCCCGACCGTG CCCGNCNGNCCGCCAACGNGCCAACGACTGNANANAGACTAGAAGAGCACAGGTATAAAN GNCGANGGTANGTGGAGNCAAGTTACNGTTGTAGCGGACGAGANANAAGANAGAGTACNG TCGGCCGNNTAAAATGTCACCNGAGGACAAGGNGNTGNAGAANATGTAAATAGCGAGGTT TAGTCNCGTGTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8909#0      CCGCCGATTTCGGGTTCGCCCGGGTGCTGAAAGAGGGCGAAAAACTGTATGATCTCTGTG 60
consensus_8909#1      ------------------------------------------------------------
consensus_8909#2      ------------------------------------------------------------
                                                                                  

consensus_8909#0      GAACTCCTGGATATTTGGCACCGGAAACATTAAAGTGCAACATGTTCGAGGATGCGCCAG 120
consensus_8909#1      ------------------------------------------------------------
consensus_8909#2      ------------------------------------------------------------
                                                                                  

consensus_8909#0      GATACTCGAAGGAGGTGGACATATGGGCCTGCGGCGTGATCATGTTCACGCTACTGGTCG 180
consensus_8909#1      ------------------------------------------------------------
consensus_8909#2      ------------------------------------------------------------
                                                                                  

consensus_8909#0      GCTGTCCACCGTTCTGGCATCGGAAGCAGATGGTAATGCTGCGTAACATCATGGAAGGCA 240
consensus_8909#1      ------------------------------------------------------------
consensus_8909#2      ------------------------------------------------------------
                                                                                  

consensus_8909#0      AATACAGCTTCACCTCCCCGGAGTGGGCTGACATTTCAGAGGATCCCAAGGACCTGATAC 300
consensus_8909#1      ------------------------------------------------------------
consensus_8909#2      ------------------------------------------------------------
                                                                                  

consensus_8909#0      GCAAATGCCTGGTGGTTGACCCATCAAAGCGAATCACAGTCACGGAAGCGTTGAAGCATC 360
consensus_8909#1      ------------------------------------------------------------
consensus_8909#2      ------------------------------------------------------------
                                                                                  

consensus_8909#0      CCTTCTTCAACACAGTTCTTTTCGAGCAAGACATTGGACCTCTGAAACGGAGCCTTTCGG 420
consensus_8909#1      ------------------------------------------------------------
consensus_8909#2      ------------------------------------------------------------
                                                                                  

consensus_8909#0      TTAAATCGAGACGCTTCAGTCGCATTGCTGACCTCGCACTGTTGCGTAAGCAAAGTCAGT 480
consensus_8909#1      -------------------------------------------------------CCAG- 4
consensus_8909#2      ------------------------------------------------------------
                                                                                  

consensus_8909#0      TCAACGCTAGGAAGAAGTTTCAGTTTGCTATACTGTGTGTACGCGCTATGATCCGGATCA 540
consensus_8909#1      --AATCCCCGAGGTTTAATTCAGTTTGCTATACTGTGTGT-CGCGCTATGATCCGGATCA 61
consensus_8909#2      --------------TCCCTATGGCTCG--ATGCAGAATACCCGCGNTT-------AATTA 37
                                        *   * * *  ** * *  *   **** *         ** *

consensus_8909#0      AGAGGCTACG-GTACACGCCGGAACCGCTGCGCGTCGAGGATGCGCTCAGAGACCCGTAC 599
consensus_8909#1      AGAGGCTACGTGTACACGCCGGAACCGCTGCGCGTCGAGGATGCGCTCAGAGACCCGTAC 121
consensus_8909#2      GGAGAATGTN---GTCCGCCGCAGTCGTTATTCT----GGTCGCGATC----GTCTACCA 86
                       ***  *         ***** *  ** *   *     **  *** **      *     

consensus_8909#0      CGCGTCAA--GGTGCTGCGCAAGGTCATCGATGGATGTGCATTTCGAGTGTATG-GCCAC 656
consensus_8909#1      CGCGTCAA--NGTGCTGCGCAAGGTCATCGATGGATGTGCATTTCGAGTGTACGTGCCAC 179
consensus_8909#2      CACGTTAAACGCTGCTACGCAATAAGTTCGATAA--GCAATCCTAGAGTGTAGCTGCTGC 144
                      * *** **    **** *****     *****    *      * *******   **  *

consensus_8909#0      TGGGTCAAGAAGGGCGAGGGTCAAAACCGGGCCGCCCTGTTCGAGAATACGCCTCGATGC 716
consensus_8909#1      TGGGTCAAGAATGGCGAGGGTCAAAACCGGGCCGCCCTGTTCGAGAATACGCCTCGATGC 239
consensus_8909#2      ATGATCACAGCTGATCAGCTGTATATGCGTAT-GTGCAGT--GATCAGTTTCATCAACCT 201
                        * ***     *   **    * *  **    *  * **  **  *    * ** *   

consensus_8909#0      GAGGTTTATAATCTTTATATCAACAGCCTTAATCGATAG-GCTGTA--GAGGTGCGCAAG 773
consensus_8909#1      GAGGTTTATAATCTTTATATCAACAGCCTTAATCGATAGTGCTGTAAGGAGGTGCGCAAG 299
consensus_8909#2      TAGCTACCCTACTTAAACATTCATA-CCATNCCTGACAA--CTGCATCCACGTAATAATG 258
                       ** *     *  *  * **  * * ** *    ** *   *** *   * **    * *

consensus_8909#0      -CTCGCTACTGCTGT-TGCT-GCTGCCGCCCGTTACGATGCGCGGGACCATCAATTCGCG 830
consensus_8909#1      GCTCGCTACTGCTGT-TGCTTGCTGCCGCCCGTTACGATGCGCGGGACCATCAATTCGCG 358
consensus_8909#2      ATTCCGTTGGGNAATATNCAAANTTCCTTTCAACA-AATTGGGGCGCCCNCGAAATAACA 317
                        **  *   *   * * *    * **   *   *  **  * * * **   ** *  * 

consensus_8909#0      GCTGGAATCAATCGGAGAG---GAAGGCGCTAGATCAATGATTAGGTG-GCGCACGGTGG 886
consensus_8909#1      GGTGGAATCNATCCGGACGAGCGAAGGCGCTAGATCAAGGANTTAGTGTGCGCACNGGTG 418
consensus_8909#2      GNANAAAGAAGGGGGGACACNCNCAGCCAC--GNTTATTANAACACCA-ACACCCCNCCA 374
                      *    **       *         ** * *  * * *             * * *     

consensus_8909#0      TGTG-------CAACGCTCGGTGAAAAAA-TGAACGCTTGCACGCAGCAATAACCATGGC 938
consensus_8909#1      GGTGTTGTCAACAGCTCGCGGTGAAAAAAATGAAACGCTTTGTCNAGCGGCNGCNATAAC 478
consensus_8909#2      NGGA-------CCACNTAAAGAGATGGANNGAAAACNANATAAGAAAAAANAANGAAAAG 427
                       *         *  *     * **   *    **           *         *    

consensus_8909#0      AGCATTAGGAGAATG--TCGTCCGTTGCAGTCGCGATTTGGTCGCGATCGTCTCCACACG 996
consensus_8909#1      --CATTGTGCNAGCA--TTATGAGNAATAA--GGAGTCTGGCTGACANCATCNCCGCACT 532
consensus_8909#2      NGAANCACACANAAAACTGACGAACANACGCGAAAACAAAGATNNTAACAACACGGTAC- 486
                         *             *                      *     * *  * *   ** 

consensus_8909#0      TTAAACGCTGCTCGCAATAAGTTCGATAAGCAATCCTAGAGTGTAGCGCGCATGATCACA 1056
consensus_8909#1      ATTGNGGTCGC---CGAACGGTTCTCCAA-------CACGGT-TNAAACGCCTNNTCGCC 581
consensus_8909#2      ATCNAAGNGA-----GGACGACCATNNAA-------GGGGGTANTANANA-ANCATNTNG 533
                       *    *                    **           **             *    

consensus_8909#0      GCGATCAGCGTTTGCGTTGGCAGGATCAGTTTCATCAACCTTAGCTACCTACTTAAACAT 1116
consensus_8909#1      ACGAA-AGCGTACTCGCAGAAAGAGACAAC-------GCCTCAGAAGATTG-TGGNGCCG 632
consensus_8909#2      NCGNAANNCNGCANCACNNCAAGNTANAGTG-----GAATACAGGNGNTNN--CGNAC-- 584
                       **     *     *      **    *              **             *  

consensus_8909#0      TCATCCATCCGACACTGCATCCACGTAATATGATTCCTGTTTCATCTCACATGGCCCCAT 1176
consensus_8909#1      GCATGTATNCAACA--GCATG-GNATCAAACG-CTCTTGCGAN-TTGGGGAGGGNCACAG 687
consensus_8909#2      -CACGACCCCGAC----CGTGCCCGNCNGNC--CGCCAACGNGCCAACGACTGNANANAG 637
                       **      * **    * *               *                *     * 

consensus_8909#0      CCCCCCCCTCCCTTTCTCCTCCCCTGTTTAGTGTGCACTACAAATAGTTAAAGAGGAGAA 1236
consensus_8909#1      GCTTNANCTCAAGACCCTANGAGGTANACAGC-CAAATTAAACGCANTTTCATTCCAANC 746
consensus_8909#2      ACTAGAA-----GAGCACAGGTA-TAAANGNC-GANGGTANGTGGAGNCAAGTTACNGTT 690
                       *             *        *             **     *              

consensus_8909#0      ACGACTGTTTCTCGTTAGCATAGTAAATTTAACAGCTAGAATTTACCCTGCAACCT-CCT 1295
consensus_8909#1      CCGGAANATCGTGGATNCCNCGGTATATGAATC--CTGGTATCATCTCCACATTGGGCCC 804
consensus_8909#2      GTAGCGGACGAGANANAAGANAGAGTACNGTCGGCCGNNTAAAATGTCACCNGAGGACAA 750
                                            *   *        *    *      *  *      *  

consensus_8909#0      ACTACCTAGGTGGCTATGGCTGCAGAACAAAACAATGCAGCAGGACTGGACTAATGCAGG 1355
consensus_8909#1      GNANCCCCAGCCCCCGCGCTCATCGNNCCCCGNTATG-GGGAGAAC---ACACACGCAGA 860
consensus_8909#2      GGNGNTGNAGAANATGTAAATAGCGAGGTTTAGTCNCGTGTT------------------ 792
                               *              *              *                    

consensus_8909#0      CAGCACAAGCGATCATTCGTCGGACAGACATAGAAAGCAAAGCAATGAGAACAGAAGAGT 1415
consensus_8909#1      ------------------------------------------------------------
consensus_8909#2      ------------------------------------------------------------
                                                                                  

consensus_8909#0      GAGGGAGGTTCACGTGATTATGCTGTGTAAAGGAGGTGCAGGCAACGGGAAAAGGAAGGA 1475
consensus_8909#1      ------------------------------------------------------------
consensus_8909#2      ------------------------------------------------------------
                                                                                  

consensus_8909#0      TCTGCTTCTGAGAAGATGATATTAAGTTTTTCGCCTTTTTTGTTTTTTTTTTATACAACC 1535
consensus_8909#1      ------------------------------------------------------------
consensus_8909#2      ------------------------------------------------------------
                                                                                  

consensus_8909#0      ATAGCTATGTACACTACTGTTAATAATAAGTAAGAAGAGGTAATATACGTATGAACCAAA 1595
consensus_8909#1      ------------------------------------------------------------
consensus_8909#2      ------------------------------------------------------------
                                                                                  

consensus_8909#0      TGACAAAAATGAGACACTCTTGTTTGTTACACATTGTGGGCGCATTGAGCATTGCAATGT 1655
consensus_8909#1      ------------------------------------------------------------
consensus_8909#2      ------------------------------------------------------------
                                                                                  

consensus_8909#0      ACGTTACAAGGACGGTAAACGACGAACCCTAATGAAGGGTACAGTGAAACAGAGAAGCGT 1715
consensus_8909#1      ------------------------------------------------------------
consensus_8909#2      ------------------------------------------------------------
                                                                                  

consensus_8909#0      TTTTCATTTCCTATTGTTTTGTATTAAGGTTATAAACAAAAATAGTAACTAAATAAATCG 1775
consensus_8909#1      ------------------------------------------------------------
consensus_8909#2      ------------------------------------------------------------
                                                                                  

consensus_8909#0      TGCTACTTACTGTAGTAAATTAGTTACATTAGTCG 1810
consensus_8909#1      -----------------------------------
consensus_8909#2      -----------------------------------
                                                         




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)