These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8936#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 733 fasta sequence [CCGGCGGAATCAAAACATTGCCTTTCCATTCCGCAGAAATCAAACAGCTGGGGACGTACCAGGGAAACTCTATCCGCTCGAAATCAAGCGCGTTTTCACGGCAAGAAACATGTCCGGAGTAGTGCGTCGTGATATTTCGCCGATGCTGCAGAAGCTGCGCAACTTTCTGCTCGGTCGTCAACATACGAACGCTCTTCGCTTTGAGGATGGAATTGCAGCCAGAACTCAACCGCCACCGAATCTACCCGATGGACCAGCACACAAACTGTCTGCCAACCACTACGTGATCCGTGATGCTCGTCGCGAAGTTGCTCCCCCGATTGATTTGACCACGCAGAAGCTACTGGCGGAAAAGGGATCAGCTGCGAAACTTCCGACACCCGGCAAGTCGTTTGGCTGGGATAAGCATTAAATCTTTCGGACTCGTTATAGGTGAACTATGAAGTGAAAAACAACAAGTGCTGTATCCTGTGTTTATCTAGTGAACGTGCGGTCCCGAATAAAGAAGCGAGGACGTGTACCAACAATTGCCGTCTACTTCATTAGTCCGCTCCCGGTTGATCAACCGTCGCGCCGACATGATCGATTACCAATAGGTCTTCAGGTAGCTCAGTCCATAATCGAACAACTACAGCCTGGTGTCTCCAGTCTCCGTTAGACTCTGTTCCACCAAAACCCCTAGTCGCTCGCGAACATACCTT-TCATCCCCAGCAGAGTTCAGCATTCTCATGTC] [+] EMBL BM644366 [CCGGCGGAATCAAAACATTGCCTTTCCATTGCACAGAAATCAAACAGCTGGGGACGTACCAGGGAAACTCTATCCGCTCGAAATCAAGCGCGTTTTCACGGCAGGAAACATGTCCGGAGTAGTGCGTCGTGATATTTCGCCGATGCTGCAGAAGCTGCGCAACTTTCTGCTCGGTCGTCAACATACGAACGCTCTTCGCTTTGAGGATGGAATTGCAGCCAGAACTCAACCGCCACCGAATCTACCCGATGGACCAGCACACAAACTGTCTGCCAACCACTACGTGATCCGTGATGCTCGTCGCGAAGTTGCTCCCCCGATTGATTTGACCACGCAGAAGCTACTGGCGGAAAAGGGATCAGCTGCGAAACTTCCGACACCCGGCAAGTCGTTTGGCTGGGATAAGCATTAAATCTTTCGGACTCGTTATAGGTGAACTATGAAGTGAAAAACAACAAGTGCTGTATCCTGTGTTTATCTAGTGAACGTGCGGTCCCGAATAAAGAAGCGAGGACGTGTACC ] [+] EMBL BM620575 [ CCGCAGAAATCAAACAGCTGGGGACGTACCAGGGAAACTCTATCCGCTCGAAATCAAGCGCGTTTTCACGGCAAGAAACATGTCCGGAGTAGTGCGTCGTGATATTTCGCCGATGCTGCAGAAGCTGCGCAACTTTCTGCTCGGTCGTCAACATACGAACGCTCTTCGCTTTGAGGATGGAATTGCAGCCAGAACTCAACCGCCACCGAATCTACCCGATGGACCAGCACACAAACTGTCTGCCAACCACTACGTGATCCGTGATGCTCGTCGCGAAGTTGCTCCCCCGATTGATTTGACCACGCAGAAGCTACTGGCGGAAAAGGGATCAGCTGCGAAACTTCCGACACCCGGCAAGTCGTTTGGCTGGGATAAGCATTAAATCTTTCGGACTCGTTATAGGTGAACTATGAAGTGAAAAACAACAAGTGCTGTATCCTGTGTTTATCTAGTGAACGTGCGGTCCCGAATAAAGAAGCGAGGACGTGTAC ] [+] EMBL BM655292 [ CCGCAGAAATCAAACAGCTGGGGACGTACCAGGGAAACTCTATCCGCTCGAAATCAAGCGCGTTTTCACGGCAGGAAACATGTCCGGAGTAGTGCGTCGTGATATTTCGCCGATGCTGCAGAAGCTGCGCAACTTTCTGCTCGGTCGTCAACATACGAACGCTCTTCGCTTTGAGGATGGAATTGCAGCCAGAACTCAACCGCCACCGAATCTACCCGATGGACCAGCACACAAACTGTCTGCCAACCACTACGTGATCCGTGATGCTCGTCGCGAAGTTGCTCCCCCGATTGATTTGACCACGCAGAAGCTACTGGCGGAAAAGGGATCAGCTGCGAAACTTCCGACACCCGGCAAGTCGTTTGGCTGGGATAAGCATTAAATCTTTCGGACTCGTTATAGGTGAACTATGAAGTGAAAAACAACAAGTGCTGTATCCTGTGTTTATCTAGTGAACGTGCGGTCCCGAATAAAGAAGCGAGGA ] [+] EMBL BM622186 [ ccGAAATCAAACAGCTGGGGACGTACCAGGGAAACTCTATCCGCTCGAAATCAAGCGCGTTTTCACGGCAAGAAACATGTCCGGAGTAGTGCGTCGTGATATTTCGCCGATGCTGCAGAAGCTGCGCAACTTTCTGCTCGGTCGTCAACATACGAACGCTCTTCGCTTTGAGGATGGAATTGCAGCCAGAACTCAACCGCCACCGAATCTACCCGATGGACCAGCACACAAACTGTCTGCCAACCACTACGTGATCCGTGATGCTCGTCGCGAAGTTGCTCCCCCGATTGATTTGACCACGCAGAAGCTACTGGCGGAAAAGGGATCAGCTGCGAAACTTCCGACACCCGGCAAGTCGTTTGGCTGGGATAAGCATTAAATCTTTCGGACTCGTTATAGGTGAACTATGAAGTGAAAAACAACAAGTGCTGTATCCTGTGTTTATCTAGTGAACGTGCGGTCCCGAATAAAGAAGCGAGGACGTGTAC ] [+] EMBL BM635997 [ ccgAAACAGCTGGGGACGTACCAGGGAAACTCTATCCGCTCGAAATCAAGCGCGTTTTCACGGCAAGAAACATGTCCGGAGTAGTGCGTCGTGATATTTCGCCGATGCTGCAGAAGCTGCGCAACTTTCTGCTCGGTCGTCAACATACGAACGCTCTTCGCTTTGAGGATGGAATTGCAGCCAGAACTCAACCGCCACCGAATCTACCCGATGGACCAGCACACAAACTGTCTGCCAACCACTACGTGATCCGTGATGCTCGTCGCGAAGTTGCTCCCCCGATTGATTTGACCACGCAGAAGCTACTGGCGGAAAAGGGATCAGCTGCGAAACTTCCGACACCCGGCAAGTCGTTTGGCTGGGATAAGCATTAAATCTTTCGGACTCGTTATAGGTGAACTATGAAGTGAAAAACAACAAGTGCTGTATCCTGTGTTTATCTAGTGAACGTGCGGTCCCGAATAAAGAAGCGAGGACGTGTACAAACAATTGCCGTCTACTTCATTAGTCCGCTCCCGGTTGATCAACCGTCGCGCCGACATGATCGATTACCAATAGGTCTTCAGGTAGCTCAGTCCATAATCGAACAACTACAGCCTGGTGTCTCCAGTCTCCGTTAGACTCTGTTCCACCAAAACCCCTAGTCGCTCGCGAACATACCTT TCATCCC ] [+] EMBL BM595860 [ ccgTGGGGACGTACCAGGGAAACTCTATCCGCTCGAAATCAAGCGCGTTTTCACGGCAAGAAACATGTCCGGAGTAGTGCGTCGTGATATTTCGCCGATGCTGCAGAAGCTGCGCAACTTTCTGCTCGGTCGTCAACATACGAACGCTCTTCGCTTTGAGGATGGAATTGCAGCCAGAACTCAACCGCCACCGAATCTACCCGATGGACCAGCACACAAACTGTCTGCCAACCACTACGTGATCCGTGATGCTCGTCGCGAAGTTGCTCCCCCGATTGATTTGACCACGCAGAAGCTACTGGCGGAAAAGGGATCAGCTGCGAAACTTCCGACACCCGGCAAGTCGTTTGGCTGGGATAAGCATTAAATCTTTCGGACTCGTTATAGGTGAACTATGAAGTGAAAAACAACAAGTGCTGTATCCTGTGTTTATCTAGTGAACG ] [+] EMBL BM604641 [ CCGGGGAAACTCTATCCGCTCGAAATCAAGCGCGTTTTCACGGCAGGAAACATGTCCGGAGTAGTGCGTCGTGATATTTCGCCGATGCTGCAGAAGCTGCGCAACTTTCTGCTCGGTCGTCAACATACGAACGCTCTTCGCTTTGAGGATGGAATTGCAGCCAGAACTCAACCGCCACCGAATCTACCCGATGGACCAGCACACAAACTGTCTGCCAACCACTACGTGATCCGTGATGCTCGTCGCGAAGTTGCTCCCCCGATTGATTTGACCACGCAGAAGCTACTGGCGGAAAAGGGATCAGCTGCGAAACTTCCGACACCCGGCAAGTCGTTTGGCTGGGATAAGCATTAAATCTTTCGGACTCGTTATAGGTGAACTATGAAGTGAAAAACAACAAGTGCTGTATCCTGTGTTTATCTAGTGAACGTGCGGTCCCGAATAAAGAAGCGAGGACGTGTACCAACAATTGCCGTCTACTTCATTAGTCCGCTCCCGGTTGATCAACCGTCGCGCCGACATGATCGATTACGAATAGGTCTTCAGGTAGCTCAGTCCATAATCGAACAACTACAGCCTGGTGTCTCCAGTCTCCGTTAGACTCTGTTCCACCAAAACCCCTAGTCGCTCGCGAACATACCTTATCATCCCCAGCAGAGTTCAGCATTCTCATGTC] [+] EMBL BM644507 [ ccgCGAAATCAAGCGCGTTTTCACGGCAAGAAACATGTCCGGAGTAGTGCGTCGTGATATTTCGCCGATGCTGCAGAAGCTGCGCAACTTTCTGCTCGGTCGTCAACATACGAACGCTCTTCGCTTTGAGGATGGAATTGCAGCCAGAACTCAACCGCCACCGAATCTACCCGATGGACCAGCACACAAACTGTCTGCCAACCACTACGTGATCCGTGATGCTCGTCGCGAAGTTGCTCCCCCGATTGATTTGACCACGCAGAAGCTACTGGCGGAAAAGGGATCAGCTGCGAAACTTCCGACACCCGGCAAGTCGTTTGGCTGGGATAAGCATTAAATCTTTCGGACTCGTTATAGGTGAACTATGAAGTGAAAAACAACAAGTGCTGTATCCTGTGTTTATCTAGTGAACGTGCGGTCCCGAATAAAGAAGCGAGGACGTGTAC ] consensusID : consensus_8936#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 493 fasta sequence [CCGCCCACGCGTCCGCAGCTGGGGACGTACCAGGGAAACTCTATCCGCTCGAAATCAAGCGCGTTTTCACGGCAGGAAACATGTCCGGAGTAGTGCGTCGTGATATTTCGCCGATGCTGCAGAAGCTGCGCAACTTTCTGCTCGGTCGTCAACATACGAACGCTCTTCGCTTTGAGGATGGAATTGCAGCCAGAACTCAACCGCCACCGAATCTACCCGATGGACCAGCACACAAACTGTCTGCCAACCACTACGTGATCCGTGATGCTCGTCGCGAAGTTGCTCCCCCGATTGATTTGACCACGCAGAAGCTACTGGCGGAAAAGGGATCAGCTGCGAAACTTCCGACACCCGGCAAGTCGTTTGGCTGGGATAAGCATTAAATCTTTCGGACTCGTTATAGGTGAACTATGAAGTGAAAAACAACAAGTGCTGTATCCTGTGTTTATCTAGTGAACGTGCGGTCCCGAATAAAGAAGCGAGGACGTGTACC] [+] EMBL BM587290 [CCGCCCACGCGTCCGCAGCTGGGGACGTACCAGGGAAACTCTATCCGCTCGAAATCAAGCGCGTTTTCACGGCAGGAAACATGTCCGGAGTAGTGCGTCGTGATATTTCGCCGATGCTGCAGAAGCTGCGCAACTTTCTGCTCGGTCGTCAACATACGAACGCTCTTCGCTTTGAGGATGGAATTGCAGCCAGAACTCAACCGCCACCGAATCTACCCGATGGACCAGCACACAAACTGTCTGCCAACCACTACGTGATCCGTGATGCTCGTCGCGAAGTTGCTCCCCCGATTGATTTGACCACGCAGAAGCTACTGGCGGAAAAGGGATCAGCTGCGAAACTTCCGACACCCGGCAAGTCGTTTGGCTGGGATAAGCATTAAATCTTTCGGACTCGTTATAGGTGAACTATGAAGTGAAAAACAACAAGTGCTGTATCCTGTGTTTATCTAGTGAACGTGCGGTCCCGAATAAAGAAGCGAGGACGTGTACC] [+] EMBL BM648778 [CCGCGGACGCGTGGGCAGCTGGGGACGTACCAGGGAAACTCTATCCGCTCGAAATCAAGCGCGTTTTCACGGCAGGAAACATGTCCGGAGTAGTGCGTCGTGATATTTCGCCGATGCTGCAGAAGCTGCGCAACTTTCTGCTCGGTCGTCAACATACGAACGCTCTTCGCTTTGAGGATGGAATTGCAGCCAGAACTCAACCGCCACCGAATCTACCCGATGGACCAGCACACAAACTGTCTGCCAACCACTACGTGATCCGTGATGCTCGTCGCGAAGTTGCTCCCCCGATTGATTTGACCACGCAGAAGCTACTGGCGGAAAAGGGATCAGCTGCGAAACTTCCGACACCCGGCAAGTCGTTTGGCTGGGATAAGCATTAAATCTTTCGGACTCGTTATAGGTGAACTATGAAGTGAAAAACAACAAGTGCTGTATCCTGTGTTTATCTAGTGAACGTGC ] [+] EMBL BM643718 [ ccgACCAGGGAAACTCTATCCGCTCGAAATCAAGCGCGTTTTCACGGCAGGAAACATGTCCGGAGTAGTGCGTCGTGATATTTCGCCGATGCTGCAGAAGCTGCGCAACTTTCTGCTCGGTCGTCAACATACGAACGCTCTTCGCTTTGAGGATGGAATTGCAGCCAGAACTCAACCGCCACCGAATCTACCCGATGGACCAGCACACAAACTGTCTGCCAACCACTACGTGATCCGTGATGCTCGTCGCGAAGTTGCTCCCCCGATTGATTTGACCACGCAGAAGCTACTGGCGGAAAAGGGATCAGCTGCGAAACTTCCGACACCCGGCAAGTCGTTTGGCTGGGATAAGCATTAAATCTTTCGGACTCGTTATAGGTGAACTATGAAGTGAAAAACAACAAGTGCTGTATCCTGTGTTTATCTAGTGAACGTGCGGTCCCGAATAAAGAAGCGAGGACGTGTACC] [+] EMBL BM640480 [ TGCAGAAGCTGCGCAACTTTCTGCTCGGTCGTCAACATACGAACGCTCTTCGCTTTGAGGATGGAATTGCAGCCAGAACTCAACCGCCACCGAATCTACCCGATGGACCATCACACGAACTGTCTGCCAACCACTACGTGATCCGTGATGCTCGTCGCGAAGTTGCTCCCCCGATTGATTTGACCACGCATAAGCTACTGGCGGAAAAGGGATCAGCTGCGAAACTTCCGACACCCGGCAAGTCGTTTGGCTGGGATAAGCATTAAATCTTTCGGACTCGTTATAGGTGAACTATGAAGTGAAAAACAACAAGTGCTGTATCCTGTGTTTATCTAGTGAACGTG ] consensusID : consensus_8936#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 463 fasta sequence [ACATACGAACGCGCTTCGTTTTGAGGATGGAATTGCAGCCAGAACTCAACCGCCACCGAATCTACCCGATGGACCAGCACACAAGTATGTAGATGCCAGCCGGCACCATCGCGCATCGCGTATCAGTAGTCAGTGTTTCTCAAACATACGAACCCCGTTTCAGACTGTCTGCCAACCACTACGTGATCCGTGATGCTCGTCGCGAAGTTGCTCCCCCGATTGATTTGACCACGCAGAAGCTACTGGCGGAAAAGGGATCAGCTGCGAAACTTCCGACACCCGGCAAGTCGTTTGGCTGGGATAAGCATTTTTTCTTTCGGACTCGTTATAGGTGAACTATGAAGTGAAAAACAACAAGTGCTGTATCCTGTGTTTATCTAGTGAACGTGCGGTCCCGAATAAAGAAGCGAGGACGTGTACAAACAAAAAAAAAAAAAAAGGCCAATGTGCCCAGCTGCGGCCC] [+] EMBL CNS08F9W [ACATACGAACGCGCTTCGTTTTGAGGATGGAATTGCAGCCAGAACTCAACCGCCACCGAATCTACCCGATGGACCAGCACACAAGTATGTAGATGCCAGCCGGCACCATCGCGCATCGCGTATCAGTAGTCAGTGTTTCTCAAACATACGAACCCCGTTTCAGACTGTCTGCCAACCACTACGTGATCCGTGATGCTCGTCGCGAAGTTGCTCCCCCGATTGATTTGACCACGCAGAAGCTACTGGCGGAAAAGGGATCAGCTGCGAAACTTCCGACACCCGGCAAGTCGTTTGGCTGGGATAAGCATTTTTTCTTTCGGACTCGTTATAGGTGAACTATGAAGTGAAAAACAACAAGTGCTGTATCCTGTGTTTATCTAGTGAACGTGCGGTCCCGAATAAAGAAGCGAGGACGTGTACAAACAAAAAAAAAAAAAAAGGCCAATGTGCCCAGCTGCGGCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8936#0 CCGGCGGAATCAAAACATTGCCTTTCCATTCCGCAGAAATCAAACAGCTGGGGACGTACC 60 consensus_8936#1 ----------------------------CCGCCCACGCGTCCG-CAGCTGGGGACGTACC 31 consensus_8936#2 ------------------------------------------------------------ consensus_8936#0 AGGGAAACTCTATCCGCTCGAAATCAAGCGCGTTTTCACGGCAAGAAACATGTCCGGAG- 119 consensus_8936#1 AGGGAAACTCTATCCGCTCGAAATCAAGCGCGTTTTCACGGCAGGAAACATGTCCGGAG- 90 consensus_8936#2 ---------------ACATACGAACGCGCTTCGTTTTGAGGATGGAATTGCAGCCAGAAC 45 * * * ** *** ** *** ** ** consensus_8936#0 TAGTGCGTCGTGATATTTCGCCGATGCTGCAGAAGCTGCGCAACTTTCTGCTCGGTCGTC 179 consensus_8936#1 TAGTGCGTCGTGATATTTCGCCGATGCTGCAGAAGCTGCGCAACTTTCTGCTCGGTCGTC 150 consensus_8936#2 TCAACCGCCACCGAATCTACCCGATGGACCAGCA----CACAAGTATGTAGATGCCAGCC 101 * ** * ** * ****** *** * * *** * * * * * * consensus_8936#0 AACATACGAACGCTCTTCGCTTTGAGGATGGAATTGCAGCCAGAACTCAACCGCCACCGA 239 consensus_8936#1 AACATACGAACGCTCTTCGCTTTGAGGATGGAATTGCAGCCAGAACTCAACCGCCACCGA 210 consensus_8936#2 GGCA--CCATCGCGCATCGCGT----------------ATCAGTAGTCAGTGTTTCTCAA 143 ** * * *** * **** * *** * *** * * consensus_8936#0 ATCTACCCGATGGACCAGCACACAAACTGTCTGCCAACCACTACGTGATCCGTGATGCTC 299 consensus_8936#1 ATCTACCCGATGGACCAGCACACAAACTGTCTGCCAACCACTACGTGATCCGTGATGCTC 270 consensus_8936#2 ACATAC-----GAACCCCGTTTCAGACTGTCTGCCAACCACTACGTGATCCGTGATGCTC 198 * *** * *** ** *********************************** consensus_8936#0 GTCGCGAAGTTGCTCCCCCGATTGATTTGACCACGCAGAAGCTACTGGCGGAAAAGGGAT 359 consensus_8936#1 GTCGCGAAGTTGCTCCCCCGATTGATTTGACCACGCAGAAGCTACTGGCGGAAAAGGGAT 330 consensus_8936#2 GTCGCGAAGTTGCTCCCCCGATTGATTTGACCACGCAGAAGCTACTGGCGGAAAAGGGAT 258 ************************************************************ consensus_8936#0 CAGCTGCGAAACTTCCGACACCCGGCAAGTCGTTTGGCTGGGATAAGCATTAAATCTTTC 419 consensus_8936#1 CAGCTGCGAAACTTCCGACACCCGGCAAGTCGTTTGGCTGGGATAAGCATTAAATCTTTC 390 consensus_8936#2 CAGCTGCGAAACTTCCGACACCCGGCAAGTCGTTTGGCTGGGATAAGCATTTTTTCTTTC 318 *************************************************** ****** consensus_8936#0 GGACTCGTTATAGGTGAACTATGAAGTGAAAAACAACAAGTGCTGTATCCTGTGTTTATC 479 consensus_8936#1 GGACTCGTTATAGGTGAACTATGAAGTGAAAAACAACAAGTGCTGTATCCTGTGTTTATC 450 consensus_8936#2 GGACTCGTTATAGGTGAACTATGAAGTGAAAAACAACAAGTGCTGTATCCTGTGTTTATC 378 ************************************************************ consensus_8936#0 TAGTGAACGTGCGGTCCCGAATAAAGAAGCGAGGACGTGTACCAACAATTGCCGTCTACT 539 consensus_8936#1 TAGTGAACGTGCGGTCCCGAATAAAGAAGCGAGGACGTGTACC----------------- 493 consensus_8936#2 TAGTGAACGTGCGGTCCCGAATAAAGAAGCGAGGACGTGTACAAACAAAAAAAAAAAAAA 438 ****************************************** consensus_8936#0 TCATTAGTCCGCTCCCGGTTGATCAACCGTCGCGCCGACATGATCGATTACCAATAGGTC 599 consensus_8936#1 ------------------------------------------------------------ consensus_8936#2 AGGCCAATGTGCCCAGCTGCGGCCC----------------------------------- 463 consensus_8936#0 TTCAGGTAGCTCAGTCCATAATCGAACAACTACAGCCTGGTGTCTCCAGTCTCCGTTAGA 659 consensus_8936#1 ------------------------------------------------------------ consensus_8936#2 ------------------------------------------------------------ consensus_8936#0 CTCTGTTCCACCAAAACCCCTAGTCGCTCGCGAACATACCTTTCATCCCCAGCAGAGTTC 719 consensus_8936#1 ------------------------------------------------------------ consensus_8936#2 ------------------------------------------------------------ consensus_8936#0 AGCATTCTCATGTC 733 consensus_8936#1 -------------- consensus_8936#2 -------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||