These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8977#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 936 fasta sequence [CCGCGGACGCGT-CGGTGCGATCGGTTCTGACTAGTCGCGTGCCCTTTCGCGTGTGATCAATCCTCACTGCAAGTTAGGCGTTAGCGGTGCGTGTAAAGTGCATTTACCGTCCAGTGCCGAAGTGAACATGAAGCTGCAAATTGCTCTACTACTTACCGTCGCCATTATCGGAACCGGGTCCGCCGCCAAATTCCCAAATGCCTTCTCGCGATGCAAACAGGAGGATGGCAACTGTTTACTGGAGGCGGTCACTGCCACCTTCCGGAATTTCCACAAAGGAGTTCCGGAAATTGGGCTGGTACCACTAGATCCGTTGCGCATCGATAAAATGGACATCGTGCAAGGAGATGGTCCAATCAACATCGTACTAAACTTCAAAAAGGTGGACCTAGGTGGATTCCGGGAGGCTCAAATTAAGAAAATCAACGGATTCACTTCTAATCCTACCAAGATGGAGATGAACCTTCTCGTTCCGGTTGCTTCACTCGTCGGAGGTTATAGAATTAATGGCAAAGTGTTGATCCTTCCCATTCAAGGTGAAGGTAACAGCAATATGACTATGGTTAACTGTGATATAT-CGCTAAAGTGGACCGGTAAGCTTGTGGAGAAGAGTGGCCAACAATTTTACCAAGTCGACAAGTTTAAGGTGCACTTCGACACCAGCCGGTTCTACATGGACTTTTCGAACCTGTTCAACGGTGATAAGGCGCTTGGCGATAATATGAATGTGTTCCTGAATGATAACTGGCAGGACATCCTAAAGGAACTGAAGCCTGCGATATCAGCGGCATTTACAAAGATTTTCCAGGCTGTTGTTAGCAACGTTTTCAACAAAGTGCCTTACAACGAGCTTTTTCTCGCTTAAGTGGGGAATGGGGTCTACTATAAATACATTAGATAACTAAGAAACATTTGGAAGATGATATTATGTGCAAT] [+] EMBL BM579863 [CCGCGGACGCGT GGGTGCGATCGGTTCTGACTAGTCGCGTGCCCTTTCGCGTGTGATCAATCCTCACTGCAAGTTAGGCGTTAGCGGTGCGTGTAAAGTGCATTTACCGTCCAGTGCCGAAGTGAACATGAAGCTGCAAATTGCTCTACTACTTACCGTCGCCATTATCGGAACCGGGTCCGCCGCCAAATTTCCAAATGCCTTCTCGCGATGCAAACAGGAGGATGGCAACTGTTTACTGGAGGCGGTCACTGCCACCTTCCGGAATTTCCACAAAGGAGTTCCGGAAATTGGACTGGTACCACTAGATCCGTTGCGCATCGATAAAATGGACATCGTGCAAGGAGATGGTCCAATCAACATCGTACTAAACTTCAAAAAGGTGGACCTAGGTGGATTCCGGGAGGCTCAAATTAAGAAAATCAACGGATTCACTTCTAATCCTACCAAGATGGAGATGAACATTCTCGTTCCGGTTGCTTCACTCGTCGGAGGTTATAGAATTAATGGCAAAGTGTTGATCCTTCCCATTCAAGGTGAAGGCAACAGCAATATGACTATGGTTAACTGTGATATAT CGCTAAAGTGGACCGGTAAGCTCGTGGAGAAGAGTGGCCAACAATTTTACCAAGTCGACAAGTTTAAGGTGCACTTCGACACCAGCCGGTTCTACATGGACTTCTCGAACCT ] [+] EMBL BM623113 [CCGCCCACGCGTCCGGTGCGATCGGTTCTGACTAGTCGCGTGCCCTTTCGCGTGTGATCAATCCTCACTGCAAGTTAGGCGTTAGCGGTGCGTGTAAAGTGCATTTACCGTCCAGTGCCGAAGTGAACATGAAGCTGCAAATTGCTCTACTACTTACCGTCGCCATTATCGGAACCGGGTCCGCCGCCAAATTTCCAAATGCCTTCTCGCGATGCAAACAGGAGGATGGCAACTGTTTACTGGAGGCGGTCACTGCCACCTTCCGGAATTTCCACAAAGGAGTTCCGGAAATTGGACTGGTACCACTAGATCCGTTGCGCATCGATAAAATGGACATCGTGCAAGGAGATGGTCCAATCAACATCGTACTAAACTTCAAAAAGGTGGACCTAGGTGGATTCCGGGAGGCTCAAATTAAGAAAATCAACGGATTCACTTCTAATCCTACCAAGATGGAGATGAACATTCTCGTTCCGGTTGCTTCACTCGTCGGAGGTTATAGAA ] [+] EMBL BM604861 [ c CGGTGCGATCGGTTCTGACTAGTCGCGTGCCCTTTCGCGTGTGATCAATCCTCACTGCAAGTTAGGCGTTAGCGGTGCGTGTAAAGGGCATTTACCGTCCAGTGCCGAAGTGAACATGAAGCTGCAAATTGCTCTACTACTTACCGTCGCCATTATCGGAACCGGGGCCGCCGCCAAATTCCCAAATGCCTTCTCGCGATGCAAACAGGAGGATGGCAACTGTTTACTGGAGGCGGTCACTGCCACCTTCCGGAATTTCCACAAAGGAGTTCCGGAAATTGGGCTGGTACCACTAGATCCGTTGCGCATCGATAAAATGGACATCGTGCAAGGAGATGGGCCAATCAACATCGTACTAAACTTCAAAAAGGTGGACCTAGGTGGATTCCGGGAGGCTCAAATTAAGAAAATCAACGGATTCACTTCTAATCCTACCAAGATGGAGATGAACCTTCTCGTTCCGGTTGCTTCACTCGTCGGAGGTTATAGAATTAATGGGAAAGTGTTGATCCTT ] [+] EMBL BM589287 [ ccgatcGTGCGATCGGTTCTGACTAGTCGCGTGCCCTTTCGCGTGTGATCAATCCTCACTGCAAGTTAGGCGTTAGCGGTGCGTGTAAAGTGCATTTACCGTCCAGTGCCGAAGTGAACATGAAGCTGCAAATTGCTCTACTACTTACCGTCGCCATTATCGGAACCGGGTCCGCCGCCAAATTTCCAAATGCCTTCTCGCGATGCAAACAGGAGGATGGCAACTGTTTACTGGAGGCGGTCACTGCCACCTTCCGGAATTTCCACAAAGGAGTTCCGGAAATTGGACTGGTACCACTAGATCCGTTGCGCATCGATAAAATGGACATCGTGCAAGGAGATGGTCCAATCAACATCGTACTAAACTTCAAAAAGGTGGACCTAGGTGGATTCCGGGAGGCTCAAATTAAGAAAATCAACGGATTCACTTCTAATCCTACCAA ] [+] EMBL BM609874 [ TCGGTTCTGACTAGTCGCGTGCCCTCTCGCGTGTGATCAATCCTCACTGCAAGTTAGGCGTTAGCGGTGCGTGTAAAGTGCATTTACCGTCCAGTGCCGTAGTGAACATGAAGCTGCAAATTGCTCTACTACTTACCGTCGCCATTATCGGAACCGGGTCCGCCGCCAAATTCCCAAATGCCTTCTCGCGATGCAAACAGGAGGATGGCAACTGTTTACTGGAGGCGGTCACTGCCACCTTCCGGAATTTCCACAAAGGAGTTCCGGAAATTGGGCTGGTACCACTAGATCCGTTGCGCATCGATAAAATGGACATCGTGCAAGGAGATGGTCCAATCAACATCGTACTAAACTTCAAAAAGGTGGACCTAGGTGGATTCCGGGAGGCTCAAATTAAGAAAATCAACGGATTCACTTCTAATCCTACCAAGATGGAGATGAACCTTCTCGTTCCGGTTGCTTCACTCGTCGGAGGTTATAGAATTAATGGCAAAGTGTTGATCCTTCCCATTCAAGGTGAAGGTAACAGCAATATGACTATGGTTAACTGTGATATAT CGCTAAAGTGGACCGGTAAGCT ] [+] EMBL BX617738 [ CTAGTCGCGTGCCCTTTCGCGTGTGATCAATCCTCACTGCAAGTTAGGCGTTAGCGGTGCGTGTAAAGTGCATTTACCGTCCAGTGCCGAAGTGAACATGAAGCTGCAAATTGCTCTACTACTTACCGTCGCCATTATCGGAACCGGGTCCGCCGCCAAATTCCCAAATGCCTTCTCGCGATGCAAACAGGAGGATGGCAACTGTTTACTGGAGGCGGTCACTGCCACCTTCCGGAATTTCCACAAAGGAGTTCCGGAAATTGGGCTGGTACCACTAGATCCGTTGCGCATCGATAAAATGGACATCGTGCAAGGAGATGGTCCAATCAACATCGTACTAAACTTCAAAAAGGTGGACCTAGGTGGATTCCGGGA ] [+] EMBL BX618945 [ CGCGTGCCCTTTCGCGTGTGATCAATCCTCACTGCAAGTTAGGCGTTAGCGGTGCGTGTAAAGTGCATTTACCGTCCAGTGCCGAAGTGAACATGAAGCTGCAAATTGCTCTACTACTTACCGTCGCCATTATCGGAACCGGGTCCGCCGCCAAATTCCCAAATGCCTTCTCGCGATGCAAACAGGAGGATGGCAACTGTTTACTGGAGGCGGTCACTGCCACCTTCCGGAATTTCCACAAAGGAGTTCCGGAAATTGCGCTGGTACCACTAGATCCGTTGCGCATCGATAA ] [+] EMBL BX608771 [ AGTGCATTTACCGTCCAGTGCCGAAGTGAACATGAAGCTGCAAATTGCTCTACTACTTACCGTCGCCATTATCGGAACCGGGTCCGCCGCCAAATTCCCAAATGCCTTCTCGCGATGCAAACAGGAGGATGGCAACTGTTTACTGGAGGCGGTCACTGCCACCTTCCGGAATTTCCACAAAGGAGTTCCGGAAATTGGGCTGGTACCACTAGATCCGTTGCGCATCGATAAAATGGACATCGTGCAAGGAGATGGTCCAATCAACATCGTACTAAACTTCAAAAAGGTGGACCTAGGTGGATTCCGGGAGGCTCAAATTAAGAAAATCAACGGATTCACTTCTAATCCTACCAAGATGGAGATGAACCTTCTCGTTCCGGTTGCTTCACTCGTCGGAGGTTATAGAATTAATGGCAAAGTGTTGATCCTTCCCATTCAAGGTGAAGGTAACAGCAATATGACTATGGTTAACTGTGATATAT CGCTAAAGTGGACCGGTAAGCTTGTGGAGAAGAGTGGCCAACAATTTTACCAAGTCGACAAGTTTAAGGTGCACTTCGACACCAGCCGGTTCTACATGGACTTTTCGAACCTGTTCAACGGTGATAAGGCGCTTGGCGATAATATGAATGTGTTCCTGAATGATAACTGGCAG ] [+] EMBL CNS09NCX [ TCGCCATTATCGGAACCGGGTCCGCCGCCAAATTCCCAAATGCCTTCTCGCGATGCAAACAGGAGGATGGCAACTGTTTACTGGAGGCGGTCACTGCCACCTTCCGGAATTTCCACAAAGGAGTTCCGGAAATTGGGCTGGTACCACTAGATCCGTTGCGCATCGATAAAATGGACATCGTGCAAGGAGATGGTCCAATCAACATCGTACTAAACTTCAAAAAGGTGGACCTAGGTGGATTCCGGGAGGCTCAAATTAAGAAAATCAACGGATTCACTTCTAATCCTACCAAGATGGAGATGAACCTTCTCGTTCCGGTTGCTTCACTCGTCGGAGGTTATAGAATTAATGGCAAAGTGTTGATCCTTCCCATTCAAGGTGAAGGTAACAGCAATATGACTATGGTTAACTGTGATATATCCGCTAAAGTGGACCGGTAAGCTTGTGGAGAAGAGTGGCCAACAATTTTACCAGGTCGACAAGTTTAAGGTGCACTTCGACA ] [-] EMBL CNS09NCY [ ATGGTCCAATCAACATCGTACTAAACTTCAAAAAGGTGGACCTAGGTGGATTCCGGGAGGCTCAAATTAAGAAAATCAACGGATTCACTTCTAATCCTACCAAGATGGAGATGAACCTTCTCGTTCCGGTTGCTTCACTCGTCGGAGGTTATAGAATTAATGGCAAAGTGTTGATCCTTCCCATTCAAGGTGAAGGTGACAGCAATATGACTATGGTTAACTGTGATATAT CGCTAAAGTGGACCGGTAAGCTTGTGGAGAAGAGTGGCCAACAATTTTACCAGGTCGACAAGTTTAAGGTGCACTTCGACACCAGCCGGTTCTACATGGACTTTTCGAACCTGTTCAACGGTGATAAGGCGCTTGGCGATAATATGAATGTGTTCCTGAATGATAACTGGCAGGACATCCTAAAGGAACTGAAGCCTGCGATATCAGCGGCATTTACAAAGATTTTCCAGGCTGTTGTTAGCAACGTTTTCAACAAAGTGCCTTACAACGAGCTTTTTCTCGCTTAAGTGGGGAATGGGGTCTACTATAAATACATTAGATAACTAAGAAACATTTGGAAGATGATATTATGTGCAAT] consensusID : consensus_8977#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 566 fasta sequence [GATCCCCCGAGGTTATCGGTTCTGACTAGTCGCGTGCCCTCTCGCGTGTGATCAATCCTCACTGCAAGTTAGGCGTTAGCGGTGCGTGTAAAGTGCATTTACCGTCCAGTGCCGAAGTGAACATGAAGCTGCAAATTGCTCTACTACTTACCGTCGCCATTATCGGAACCGGGTCCGCCGCCAAATTCCCAAATGCCTTCTCGCGATGCAAACAGGAGGATGGCAACTGTTTACTGGAGGCGGTCACTGCCACCTTCCGGAATTTCCACAAAGGAGTTCCGGAAATTGGGCTGGTACCACTAGATCCGTTGCGCATCGATAAAATGGACATCGTGCAAGGAGATGGTCCAATCAACATCGTACTAAACTTCAAAAAGGTGGACCTAGGTGGATTCCGGGAGGCTCAAATTAAGAAAATCAACGGATTCACTTCTAATCCTACCAAGATGGAGATGAACCTTCTCGTTCCGGTTGCTTCACTCGTCGGAGGTTATAGAATTAATGGCAAAGTGTTGATCCTTCCCATTCAAGGTGAAGGTAACAGCAATATGACTATGGTTAACTGT] [+] EMBL AL692281 [GATCCCCCGAGGTTATCGGTTCTGACTAGTCGCGTGCCCTCTCGCGTGTGATCAATCCTCACTGCAAGTTAGGCGTTAGCGGTGCGTGTAAAGTGCATTTACCGTCCAGTGCCGAAGTGAACATGAAGCTGCAAATTGCTCTACTACTTACCGTCGCCATTATCGGAACCGGGTCCGCCGCCAAATTCCCAAATGCCTTCTCGCGATGCAAACAGGAGGATGGCAACTGTTTACTGGAGGCGGTCACTGCCACCTTCCGGAATTTCCACAAAGGAGTTCCGGAAATTGGGCTGGTACCACTAGATCCGTTGCGCATCGATAAAATGGACATCGTGCAAGGAGATGGTCCAATCAACATCGTACTAAACTTCAAAAAGGTGGACCTAGGTGGATTCCGGGAGGCTCAAATTAAGAAAATCAACGGATTCACTTCTAATCCTACCAAGATGGAGATGAACCTTCTCGTTCCGGTTGCTTCACTCGTCGGAGGTTATAGAATTAATGGCAAAGTGTTGATCCTTCCCATTCAAGGTGAAGGTAACAGCAATATGACTATGGTTAACTGT] [+] EMBL BX612677 [ CGGTGCGTGTAAAGTGCATTTACCGTCCAGTGCCGAAGTGAACATGAAGCTGCAAATTGCTCTACTACTTACCGTCGCCATTATCGGAACCGGGTCCGCCGCCAAATTCCCAAATGCCTTCTCGCGATGCAAACAGGAGGATGGCAACTGTTTACTGGAGGCGGTCACTGCCACCTTCCGGAATTTCCACAAAGGAGTTCCGGAAATTGGGCTGGTACCACTAGATCCGTTGCGCATCGATAAAATGGACATCGTGCAAGGAGATGGTCCAATCAACATCGTACTAAACTTCAAAAAGGTGGACCTAGGTGGATTCCGGGAGGCTCAAATTAAGAAAATCAACGGATTCACTTCTAATCCTACCAAGATGGAGATGAACCTTCTCGTTCCGGTTGCTTCACTCGTCGGAGGTTATAGAATTAATGGCAAAGTGTTGATCCTTCCCATTCAAGGTGAAGGTAACAGCAATATGACTATGGTT ] consensusID : consensus_8977#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 263 fasta sequence [TTACCGCCCAGTGCCGAAGTGAACATGAAGCTGCAAATGGCTCTACTACTTACCGTCGCCATTATCGGAACCGGGCCCGCCGCCAAATCCCCAAAGGCCTCCTCGCGATGCAAACAGGAGGAAGGCAACTGTTTACTGGAGGCGGTCACGGCCACCTGCCGGAATCCCCACAAAGGAGCTCCGGAAATGGGGCGGGTACCACTAGAGCCGTTGCGCACCGAGAAAAGGGACACCGTGCAAGGAGAAGGGCCAATCAACATCGT] [+] EMBL BX610185 [TTACCGCCCAGTGCCGAAGTGAACATGAAGCTGCAAATGGCTCTACTACTTACCGTCGCCATTATCGGAACCGGGCCCGCCGCCAAATCCCCAAAGGCCTCCTCGCGATGCAAACAGGAGGAAGGCAACTGTTTACTGGAGGCGGTCACGGCCACCTGCCGGAATCCCCACAAAGGAGCTCCGGAAATGGGGCGGGTACCACTAGAGCCGTTGCGCACCGAGAAAAGGGACACCGTGCAAGGAGAAGGGCCAATCAACATCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8977#0 CCGCGGACGCGTCGGTGCGATCGGTTCTGACTAGTCGCGTGCCCTTTCGCGTGTGATCAA 60 consensus_8977#1 -----GATCCCCCGAGGTTATCGGTTCTGACTAGTCGCGTGCCCTCTCGCGTGTGATCAA 55 consensus_8977#2 ------------------------------------------------------------ consensus_8977#0 TCCTCACTGCAAGTTAGGCGTTAGCGGTGCGTGTAAAGTGCATTTACCGTCCAGTGCCGA 120 consensus_8977#1 TCCTCACTGCAAGTTAGGCGTTAGCGGTGCGTGTAAAGTGCATTTACCGTCCAGTGCCGA 115 consensus_8977#2 -------------------------------------------TTACCGCCCAGTGCCGA 17 ****** ********** consensus_8977#0 AGTGAACATGAAGCTGCAAATTGCTCTACTACTTACCGTCGCCATTATCGGAACCGGGTC 180 consensus_8977#1 AGTGAACATGAAGCTGCAAATTGCTCTACTACTTACCGTCGCCATTATCGGAACCGGGTC 175 consensus_8977#2 AGTGAACATGAAGCTGCAAATGGCTCTACTACTTACCGTCGCCATTATCGGAACCGGGCC 77 ********************* ************************************ * consensus_8977#0 CGCCGCCAAATTCCCAAATGCCTTCTCGCGATGCAAACAGGAGGATGGCAACTGTTTACT 240 consensus_8977#1 CGCCGCCAAATTCCCAAATGCCTTCTCGCGATGCAAACAGGAGGATGGCAACTGTTTACT 235 consensus_8977#2 CGCCGCCAAATCCCCAAAGGCCTCCTCGCGATGCAAACAGGAGGAAGGCAACTGTTTACT 137 *********** ****** **** ********************* ************** consensus_8977#0 GGAGGCGGTCACTGCCACCTTCCGGAATTTCCACAAAGGAGTTCCGGAAATTGGGCTGGT 300 consensus_8977#1 GGAGGCGGTCACTGCCACCTTCCGGAATTTCCACAAAGGAGTTCCGGAAATTGGGCTGGT 295 consensus_8977#2 GGAGGCGGTCACGGCCACCTGCCGGAATCCCCACAAAGGAGCTCCGGAAATGGGGCGGGT 197 ************ ******* ******* *********** ********* **** *** consensus_8977#0 ACCACTAGATCCGTTGCGCATCGATAAAATGGACATCGTGCAAGGAGATGGTCCAATCAA 360 consensus_8977#1 ACCACTAGATCCGTTGCGCATCGATAAAATGGACATCGTGCAAGGAGATGGTCCAATCAA 355 consensus_8977#2 ACCACTAGAGCCGTTGCGCACCGAGAAAAGGGACACCGTGCAAGGAGAAGGGCCAATCAA 257 ********* ********** *** **** ***** ************ ** ******** consensus_8977#0 CATCGTACTAAACTTCAAAAAGGTGGACCTAGGTGGATTCCGGGAGGCTCAAATTAAGAA 420 consensus_8977#1 CATCGTACTAAACTTCAAAAAGGTGGACCTAGGTGGATTCCGGGAGGCTCAAATTAAGAA 415 consensus_8977#2 CATCGT------------------------------------------------------ 263 ****** consensus_8977#0 AATCAACGGATTCACTTCTAATCCTACCAAGATGGAGATGAACCTTCTCGTTCCGGTTGC 480 consensus_8977#1 AATCAACGGATTCACTTCTAATCCTACCAAGATGGAGATGAACCTTCTCGTTCCGGTTGC 475 consensus_8977#2 ------------------------------------------------------------ consensus_8977#0 TTCACTCGTCGGAGGTTATAGAATTAATGGCAAAGTGTTGATCCTTCCCATTCAAGGTGA 540 consensus_8977#1 TTCACTCGTCGGAGGTTATAGAATTAATGGCAAAGTGTTGATCCTTCCCATTCAAGGTGA 535 consensus_8977#2 ------------------------------------------------------------ consensus_8977#0 AGGTAACAGCAATATGACTATGGTTAACTGTGATATATCGCTAAAGTGGACCGGTAAGCT 600 consensus_8977#1 AGGTAACAGCAATATGACTATGGTTAACTGT----------------------------- 566 consensus_8977#2 ------------------------------------------------------------ consensus_8977#0 TGTGGAGAAGAGTGGCCAACAATTTTACCAAGTCGACAAGTTTAAGGTGCACTTCGACAC 660 consensus_8977#1 ------------------------------------------------------------ consensus_8977#2 ------------------------------------------------------------ consensus_8977#0 CAGCCGGTTCTACATGGACTTTTCGAACCTGTTCAACGGTGATAAGGCGCTTGGCGATAA 720 consensus_8977#1 ------------------------------------------------------------ consensus_8977#2 ------------------------------------------------------------ consensus_8977#0 TATGAATGTGTTCCTGAATGATAACTGGCAGGACATCCTAAAGGAACTGAAGCCTGCGAT 780 consensus_8977#1 ------------------------------------------------------------ consensus_8977#2 ------------------------------------------------------------ consensus_8977#0 ATCAGCGGCATTTACAAAGATTTTCCAGGCTGTTGTTAGCAACGTTTTCAACAAAGTGCC 840 consensus_8977#1 ------------------------------------------------------------ consensus_8977#2 ------------------------------------------------------------ consensus_8977#0 TTACAACGAGCTTTTTCTCGCTTAAGTGGGGAATGGGGTCTACTATAAATACATTAGATA 900 consensus_8977#1 ------------------------------------------------------------ consensus_8977#2 ------------------------------------------------------------ consensus_8977#0 ACTAAGAAACATTTGGAAGATGATATTATGTGCAAT 936 consensus_8977#1 ------------------------------------ consensus_8977#2 ------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||