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Anopheles gambiae
cluster # 8987 cluster # 8987       Sequences # 13       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8987#0 length = 1626 sequences # 9  
consensus_8987#1 length = 1147 sequences # 1  
consensus_8987#2 length = 865 sequences # 3  

consensusID : consensus_8987#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 1626
fasta sequence
                              [CCGCCCACGCGTCCGCGTTAATATTGCCTTGGCTATTTTATTCTTTAAAATACTCACATAGCGTTGGCTCAGTCCATGTTTGCATTTCAGCATGTTTCTAAGAGAGGTGGCACTATAGAATAGCCGGAGGCAGAAATGAGGATAATATTTAAACGAACATTATGGGATAACTCTTGTCGCAGCAGGACGCTACAAAGAAGAAGAAGAAGAAGAAACCCCGAACCAAAATATTACAAAGAAG---AAAAAACAAAGCTAAAATATAAAACTCTTGCCTCCCCCCTTAGATCAAGA-AA---ACACACACACACACAAACAAACACAATCAAATTATACAACCACATACACAAAAAAACACAAACCGACAAGTGTAACCATTTTCCGCCCGCTGCATCTTTGCAATTGCAGACCAATTCAACGTGTTTTTTTGTTCTAGTTTTTTGTTTAAATGAAAAATTGTTTTTGAACGACGGACGACCTCGGCCGAGGGATGGGGAAATCACAACTGTCGCCGGCGCAGCAGCAGCAGGACAAGGTGATAAAGGAGCGGTGTCCCGGGCAAACGTGTTAAGAAAGTGAGGCAATCAATTAGTGAGCATGGCATGGAGATGAAATCAATAAAATTGTGTATCTTTGTGCATCAATCATCAATCTAACGCAATTACGATCCATCC-TTTACCTACGTAAAATATTTAAAAAG-AAAGCGTGAAAGAAGGAGAAGTGCGGCGTTTCGTCGAAGGCCGCAGC-AAAAATGTCGCAGCTGAGGGAGGTGACGAACGCAGAATTAAACC--AAAAAAAAAAAAGAAAAGCCACACGAGTCAACCGGCACCGGCACGACCTGTGATTGCTGTAGAATTGGTAAGATGAAAAGATCTTAAATAGAAAAGAAAATAGCTAAGGAATAAACCACACAACAACAACAACAAAAACTTTGCAAAACAAATCAATGAACCAAGGTCCCGTTTCTAGTTTGGAGCCGTAAAGTAAGAAGGAAGAAAATTGGAAAATTTGGAAAAAGAAAGCAAAAAATAACACAGCATGAAATGCAACTAAACCGAAAGGATTAGCAAACAACTTCGATCGAACGAGTAGAAGATAGGGAAAACAAGATACAGGCGGAACAGAGCGCGTGTACGAGGAAAAGCATGAAAGCGATGTATCGAAAGGAAAGCAGTAGTACAGTGGCGCGCCGCCAAAAGCAA--CAAAAAAAAGCGGACAGGACGCGTGAACCAATATGTGTAGCCGAAAAGCAGTCGAAAAACAGGAGTGAAACCAAACTAAAACCAAAACCAACTAGATAAATCAATTGTAACACCGGACACAAATGTTGTTGCGCGCAGGAAGGAGTAAGAGAAGGAGGAGGACGAGAAGGAACTTTGCAGCAGATGCGAAAGCCAAATCTTACGAAAACTTTGTTAACATAATTTTTAGCAAAAAGAA-AA-GA-GAGGAGCGAA-TCTATCGTCGTGTAACGTAAGCAGTAACGCGTGAATGTGGACGCTGG-AAT-CA-AAAAAGTCCT-GGATCCT-GTT-TCAG-AC-TAT-TTC-TTTCGTT--TG--TTTCGTTTCT-GTACCAAAACCA-CAGG-AA-TA-TTCAAATTTGC-T-TAAGG-TCAAG-CTCTTAA-GATTCTAATACACAAAAAGTATGTTG]

[+] EMBL BM591805             [CCGCCCACGCGTCCGCGTTAATATTGCCTTGGCTATTTTATTCTTTAAAATACTCACATAGCGTTGGCTCAGTCCATGTTTGCATTTCAGCATGTTTCTAAGAGAGGTGGCACTATAGAATAGCCGGAGGCAGAAATGAGGATAATATTTAAACGAACATTATGGGATAACTCTTGTCGCAGCAGGACGCTACAAAGAAGAAGAAGAAGAAGAAACCCCGAACCAAAATATTACAAAGAAG   AAAAAACAAAGCTAAAATATAAAACTCTTGCCTCCCCCCTTAGATCAAGA AA   ACACACACACACACAAACAAACACAATCAAATTATACAACCACATACACAAAAAAACACAAACCGACAAGTGTAACCATTTTCCGCCCGCTGCATCTTTGCAATTGCAGACCAATTCAACGTGTTTTTTTGTTCTAGTTTTTTGTTTAAATGAAAAATTGTTTTTGAACGACGGACGACCTCGGCCGAGGGATGGGGAAATCACAACTGTCGCCGGCGCAGCAGCAGCAGGACAAGGTGATAAAGGAGCGGTGTCCCGGGCAAACGTGTTAAGAAAGTGAGGCAATCAATTAGTGAGCATGGCATGGAGATGAAATCAATAAAATTGTGTATCTTTGTGCATCAATCATCAATCTAACGCAATTACGATCCAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL BM655052             [                                                              ccgGGCTCAGTCCATGTTTGCATTTCAGCATGTTTCTAAGAGAGGTGGCACTATAGAATAGCCGGAGGCAGAAATGAGGATAATATTTAAACGAACATTATGGGATAACTCTTGTCGCAGCAGGACGCTACAAAGAAGAAGAAGAAGAAGAAACCCCGAACCAAAATATTACAAAGAAG   AAAAAACAAAGCTAAAATATAAAACTCTTGCCTCCCCCCTTAGATCAAGA AA   ACACACACACACACAAACAAACACAATCAAATTATACAACCACATACACAAAAAAACACAAACCGACAAGTGTAACCATTTTCCGCCCGCTGCATCTTTGCAATTGCAGACCAATTCAACGTGTTTTTTTGTTCTAGTTTTTTGTTTAAATGAAAAATTGTTTTTGAACGACGGACGACCTCGGCCGAGGGATGGGGAAATCACAACTGTCGCCGGCGCAGCAGCAGCAGGACAAGGTGATAAAGGAGCGGTGTCCCGGGCAAACGTGTTAAGAAAGTGAGGCAATCAATTAGTGAGCATGGCATGGAGATGAAATCAATAAAATTGTGTATCTTTGTGCATCAATCATCAATCTAACGCAATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BX611226             [                                                                                                                                                                                                   AGAAGAAGAAGAAGAAGAAACCCCGAACCAAAATATTACAAAGAAG   AAAAAACAAAGCTAAAATATAAAACTCTTGCCTCCCCCCTTAGATCAAGA AA   ACACACACACACACAAACAAACACAATCAAATTATACAACCACATACACAAAAAAACACAAACCGACAAGTGTAACCATTTTCCGCCCGCTGCATCTTTGCAATTGCAGACCAATTCAACGTGTTTTTTTGTTCTAGTTTTTTGTTTAAATGAAAAATTGTTTTTGAACGACGGACGACCTCGGCCGAGGGATGGGGAAATCACAACTGTCGCCGGCGCAGCAGCAGCAGGACAAGGTGATAAAGGAGCGGTGTCCCGGGCAAACGTGTTAAGAAAGTGAGGCAATCAATTAGTGAGCATGGCATGGAGATGAAATCAATAAAATTGTGTATCTTTGTGCATCAATCATCAATCTAACGCAATTACGATCCATCC TTTACCTACGTAAAATATTTAAAAAGAAAAGCGTGAAAGAAGGAGAAGTGCGGCGTTTCGTCGAAGGCCGCAGCAAAAAATGTCGCAGCTGAGGGAGGTGACGAACGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BM656857             [                                                                                                                                                                                                             ccgGAAGAAACCCCGAACCAAAATATTACAAAGAAGAAAAAAAAACAAAGCAAAAATATAAAACTCTTGCCTCCCCCCTTAGATCAAGATAACAGACACACACACAAACAAACAAACACAATCAAATTATACAACCACATACAC AAAAAACACAAACCGACAAGTGTAACCATTTTCCGCCCGCTGCATCTTTGCAATTGCAGACCAATTCAACGTGTTTTTTTGTTCTAGTTTTTTGTTTAAATGAAAAATTGTTTTTGAACGACGGACGACCTCGGCCGAGGGATGGGGAAATCACAACTGT GTCGGAGCAGCAGCAGCAGGACAAGGTGATAAAGGAGCGGTGTCCCGAGCAAACGTGTTAAGAAAGTGAGGCAATCAATTAGTGAGCATGGCATGGAGATGAAATCAATAAAATTGTGTATCTTTGTGCATCAATCATCAATCTAACGCAATTACGATCCATCCTTTTACCTACGTAAAATATTTAAAAAG AAAGCGTGAAAGAAGGAGAAGTGCGGCGTTTCGTCGAAGGCCTCAGC AAAACTGTCACAGTTGAGGAAGGTGACGAACGCGGAATTAAACCAAAAAAAAAAAAAAGAAAAGCCACACGAGTCAACCGGCACCGGCACGACCTGTGATTGCTGTAAAATTGGAAAGATGAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BX627429             [                                                                                                                                                                                                                                                                                                                                                                                                                                                        TTTGTTTAAATGAAAAATTGTTTTTGAACGACGGACGACCTCGGCCGAGGGATGGGGAAATCACAACTGTCGCCGGCGCAGCAGCAGCAGGACAAGGTGATAAAGGAGCGGTGTCCCGGGCAAACGTGTTAAGAAAGTGAGGCAATCAATTAGTGAGCATGGCATGGAGATGAAATCAATAAAATTGTGTATCTTTGTGCATCAATCATCAATCTAACGCAATTACGATCCATCC TTTACCTACGTAAAATATTTAAAAAG AAAGCGTGAAAGAAGGAGAAGTGCGGCGTTTCGTCGAAGGCCGCAGC AAAAATGTCGCAGCTGAGGGAGGTGACGAACGCAGAATTAAACC  AAAAAAAAAAAAGAAAAGCCACACGAGTCAACCGGCACCGGCACGACCTGTGATTGCTGTAGAATTGGTAAGATGAAAAGATCTTAAATAGAAAAGAAAATAGCTAAGGAATAAACCACACAACAACAACAACAAAAACTTTGCAAAACAAATCAATGAACCAAGGTCCCGTTTCTAGTTTGGAGCCGTAAAGTAAGAAGGAAGAAAATTGGAAAATTTGGAAAAg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BX616500             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CGCAGCTGAGGGAGGTGACGAACGCAGAATTAAACC  AAAAAAAAAAAAGAAAAGCCACACGAGTCAACCGGCACCGGCACGACCTGTGATTGCTGTAGAATTGGTAAGATGAAAAGATCTTAAATAGAAAAGAAAATAGCTAAGGAATAAACCACACAACAACAACAACAAAAACTTTGCAAAACAAATCAATGAACCAAGGTCCCGTTTCTAGTTTGGAGCCGTAAAGTAAGAAGGAAGAAAATTGGAAAATTTGGAAAAAGAAAGCAAAAAATAACACAGCATGAAATGCAACTAAACCGAAAGGATTAGCAAACAACTTCGATCGAACGAGTAGAAGATAGGGAAAACAAGATACAGGCGGAACAGAGCGCGTGTACGAGGAAAAGCATGAAAGCGATGTATCGAAAGGAAAGCAGTAGTACAGTGGCGCGCCGCCAAAAGCAA  CAAAAAAAAGCGGACAGGACGCGTGAACCAATATGTGTAGCCGAAAAGCAGTCGAAAAACAGGAGTGAAACCAAACTAAAACCAAAACCAACTAGATAAATCAATTGTAACACCGGACACAAATGTTGTTGCGCGCAGGAAGGAGTAAGAGAAGGAGGAGGACGAGAAGGAACTTTGCAGCAGATGCGAAAGCCAAATCTTACGAAAACTTTGTTAACATAATTTTTAGCAAAAAGAA AA GA GAGGAGCGAA TCTATCGTCGTGTAACGTAAGCAGTAACGCGTGAATGTGGAC                                                                                                                                                                ]
[+] EMBL AL695983             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ccgaggttAAGG AGAAAATTGGAAAATTTGGAAAAAGAAAGCAATAAATAACACAGCATGAAATGCAACTAAACCGAAAGGATTAGCAAACAACTTCGATCGAACGAGTAGAAGATAGGGAAAACAAGATACAGGCGGAACAGAGCGCGTGTACGAGGAAAAGCATGAAAGCGATGTATCGAAAGGAAAGCAGTAGTACAGTGGCGCGCCGCCAAAAGCAA  CAAAAAAAAGCGGACAGGACGCGTGAACCAATATGTGTAGCCGAAAAGCAGTCGAAAAACAGGAGTGAAACCAAACTAAAACCAAAA CAACTAGATAAATCAATTGTAACACCGGACACAAATGTTGTTGCGCGCAGGAAGGAGTAAGAGAAGGAGGAGGACGAGAAGGAACTTTGCAGCAGATGCGAAAGCCNAATCTTACGAAAACTTTGTTAACATAATTTTTAGCAAAAAGAACAACGACGAGGAGCGAAGTCTATCGTCGTGTAACGTAAGCAGTAACGCGTGAATGTGGACGCTGGNAATCCACACAAAGTCCTGGGATCCTGGTTATCAGNACGTATATTCTTTTCGNTAATGNCATACGGNACTGGTACCAAAAACACCAGGCAAGTATTTCAAATTTGCGTCTAAGGTTCAAGNCTCTTAACGATTCTAATACAC             ]
[+] EMBL BM585395             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ccGGAAGAAAATTGGAAAATTTGGAAAAAGATAGCAAAAAATAACACAGCATGAAATGCAACTAAACCGAAAGGATTAGCAAACAACTTCGATCGAACGAGTAGAAGATAGGGAAAACAAGAAACAGGCGGAACAGAGCGCGTGTACGAGGAAAAGCATGAAAGCGATGTATCGAAAGGAAAGCAGTAGTACAGTGGCGCGCCGTCAAAAGCAAAGAAAAAAAAAGCGGACAGGACGCGCGAACCAATATGTGTAGCCGAAAAGCAGTCGAAAAACAGGAGTGAAACCAAACT AAACCAAAACCAACTAGATAAATCAATTGTAACACCGGACACAAATGTTGTTGCGCGCAGGAAGGAGTAAGAGAAGGAGGAGGATGAGAAGGAACTTTGCAGCAGATGCGAAAGCCAAATCTTACGAAAACTTTGTTAACATAATTTTTAGCAAAAAGAA AA GA GAGGAGCGAA TCTATCGTCGTGTAACGTAAGCAGTAACGCGTGAATGTGGACGCTGG AAT CA AAAAAGTCCT GGATCCT GTT TCAG AC TAT TTC TTTCGTT  TG  TTTCGTTTCT GTACCAAAACCA CAGG AA TA TTCAAATTTGC T TAAGG TCAAG                                   ]
[+] EMBL BX616766             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               AGCAAACAACTTCGATCGAACGAGTAGAAGATAGGGAAAACAAGATACAGGCGGAACAGATCGCGTGTACGAGGAAAAGCATGAAAGCGATGTATCGAAAGGAAAGCAGTAGTACAGTGGCGCGCCGCCAAAAGCAA  CAAAAAAAAGCGGACAGGACGCGTGAACCAATATGTGTAGCCGAAAAGCAGTCGAAAAACAGGAGTGAAACCAAACTAAAACCAAAACCAACTAGATAAATCAATTGTAACACCGGACACAAATGTTGTTGCGCGCAGGAAGGAGTAAGAGAAGGAGGAGGACGAGAAGGAACTTTGCAGCAGATGCGAAAGCCAAATCTTACGAAAACTTTGTTAACATAATTTTTAGCAAAAAGAA AA GA GAGGAGCGAA TCTATCGTCGTGTAACGTAAGCAGTAACGCGTGAATGTGGACGCTGG AAT CA AAAAAGTCCT GGATCCT GTT TCAG AC TAT TTC TTTCGTT  TG  TTTCGTTTCT GTACCAAAACCA CAGG AA TA TTCAAATTTGC T TAAGG TCAAG CTCTTAA GATTCTAATAAACAAAAAGTATGTTG]


>consensus_8987#0 CCGCCCACGCGTCCGCGTTAATATTGCCTTGGCTATTTTATTCTTTAAAATACTCACATA GCGTTGGCTCAGTCCATGTTTGCATTTCAGCATGTTTCTAAGAGAGGTGGCACTATAGAA TAGCCGGAGGCAGAAATGAGGATAATATTTAAACGAACATTATGGGATAACTCTTGTCGC AGCAGGACGCTACAAAGAAGAAGAAGAAGAAGAAACCCCGAACCAAAATATTACAAAGAA GAAAAAACAAAGCTAAAATATAAAACTCTTGCCTCCCCCCTTAGATCAAGAAAACACACA CACACACAAACAAACACAATCAAATTATACAACCACATACACAAAAAAACACAAACCGAC AAGTGTAACCATTTTCCGCCCGCTGCATCTTTGCAATTGCAGACCAATTCAACGTGTTTT TTTGTTCTAGTTTTTTGTTTAAATGAAAAATTGTTTTTGAACGACGGACGACCTCGGCCG AGGGATGGGGAAATCACAACTGTCGCCGGCGCAGCAGCAGCAGGACAAGGTGATAAAGGA GCGGTGTCCCGGGCAAACGTGTTAAGAAAGTGAGGCAATCAATTAGTGAGCATGGCATGG AGATGAAATCAATAAAATTGTGTATCTTTGTGCATCAATCATCAATCTAACGCAATTACG ATCCATCCTTTACCTACGTAAAATATTTAAAAAGAAAGCGTGAAAGAAGGAGAAGTGCGG CGTTTCGTCGAAGGCCGCAGCAAAAATGTCGCAGCTGAGGGAGGTGACGAACGCAGAATT AAACCAAAAAAAAAAAAGAAAAGCCACACGAGTCAACCGGCACCGGCACGACCTGTGATT GCTGTAGAATTGGTAAGATGAAAAGATCTTAAATAGAAAAGAAAATAGCTAAGGAATAAA CCACACAACAACAACAACAAAAACTTTGCAAAACAAATCAATGAACCAAGGTCCCGTTTC TAGTTTGGAGCCGTAAAGTAAGAAGGAAGAAAATTGGAAAATTTGGAAAAAGAAAGCAAA AAATAACACAGCATGAAATGCAACTAAACCGAAAGGATTAGCAAACAACTTCGATCGAAC GAGTAGAAGATAGGGAAAACAAGATACAGGCGGAACAGAGCGCGTGTACGAGGAAAAGCA TGAAAGCGATGTATCGAAAGGAAAGCAGTAGTACAGTGGCGCGCCGCCAAAAGCAACAAA AAAAAGCGGACAGGACGCGTGAACCAATATGTGTAGCCGAAAAGCAGTCGAAAAACAGGA GTGAAACCAAACTAAAACCAAAACCAACTAGATAAATCAATTGTAACACCGGACACAAAT GTTGTTGCGCGCAGGAAGGAGTAAGAGAAGGAGGAGGACGAGAAGGAACTTTGCAGCAGA TGCGAAAGCCAAATCTTACGAAAACTTTGTTAACATAATTTTTAGCAAAAAGAAAAGAGA GGAGCGAATCTATCGTCGTGTAACGTAAGCAGTAACGCGTGAATGTGGACGCTGGAATCA AAAAAGTCCTGGATCCTGTTTCAGACTATTTCTTTCGTTTGTTTCGTTTCTGTACCAAAA CCACAGGAATATTCAAATTTGCTTAAGGTCAAGCTCTTAAGATTCTAATACACAAAAAGT ATGTTG



consensusID : consensus_8987#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1147
fasta sequence
                              [CCTGNGGTTTATGTGGCGTTTCTGTCGAAGTGCCNGCAGCAAAATGTCTGTNAGCTGAGTGGAGTGTGACGAACGCAGAATTAAACCAAAAAAAAAAAAGAAAATGCCACACGAGTCAACCGTGCACCGTGCACGACCTGTGATTGCTGTAGAATTGGTCAAGCATGANCACAGATCTTTCAAATAAGCACACACAGCAACACATAGCTTANAGTGCAATTAAAACCACACAAACAAAACAAACAAACAAAAAAACTTTTGCCAAAAAACAAAGTCCAAATTGAAAGCCAAAGGGTCCCCCGGNTTTCTAAGGTTTAATTGGAGGACATGAGCCCCTGGTTACACAGAACTGGTTCAAAACGGACACGGTGGCAGCCATCGGACAAAAGCACNGTTTCTCGGGGGACNNACACAACTTCTCCTTGGCGGCACACAACAACAACGGGACACATCACGGCCCACAANTAACACGCACAACTTTAAACAGNCAACCCAAATGGCCCCACTTTTGGTACACACATTTGGCCGCAACACGTTTAAAAAAAAACCCCTGGGACGACACCAGGTGGCCATTTTTTCAATACGGCCCCAACAANGTCANCCTACACAAANCGCTTATTTAACCCGTGCAAAGTNTAACCGCGGCAAACACACAGGGCAACGTGGTTTCAACGGCANAACACGGGCACTTAAACACGCTGGCGTGCCAACANCCAACACTCCCACACACAANGGCAAATTTTANACACCCAATGTGTGAGCCGGTGGGGNACACAAACCCCACANAGGAAGAACAGCCCGGTCCTGCGATTATAGGTTAACCGCCGACGACAAAGGGTGGGGCANCANCGCAAACCAAGGTGNCCCCAACCTTTTGGGNAACCCACAACACNACCGTTCCCCGGCCAAACGCATTGGGCTNNTAAGCATTTCCGGGAAACACANCACGGTGTGGGAGAACACACNNAGNTGCNCCCCGCACNCGCATTCAACCGCAGCAATTAAACCCCAAACGAGCAACAGGTNGGNNCGCACCGGCCCCNGTGCCCCCCCCTGGAGCGCCCCCCAAGACACACAAGACAGCGACCCNCAACAAACCACACACAANCACAAGACACAACANACGGGCAGCGGTGGGGTAANCCAC]

[+] EMBL AL696077             [CCTGNGGTTTATGTGGCGTTTCTGTCGAAGTGCCNGCAGCAAAATGTCTGTNAGCTGAGTGGAGTGTGACGAACGCAGAATTAAACCAAAAAAAAAAAAGAAAATGCCACACGAGTCAACCGTGCACCGTGCACGACCTGTGATTGCTGTAGAATTGGTCAAGCATGANCACAGATCTTTCAAATAAGCACACACAGCAACACATAGCTTANAGTGCAATTAAAACCACACAAACAAAACAAACAAACAAAAAAACTTTTGCCAAAAAACAAAGTCCAAATTGAAAGCCAAAGGGTCCCCCGGNTTTCTAAGGTTTAATTGGAGGACATGAGCCCCTGGTTACACAGAACTGGTTCAAAACGGACACGGTGGCAGCCATCGGACAAAAGCACNGTTTCTCGGGGGACNNACACAACTTCTCCTTGGCGGCACACAACAACAACGGGACACATCACGGCCCACAANTAACACGCACAACTTTAAACAGNCAACCCAAATGGCCCCACTTTTGGTACACACATTTGGCCGCAACACGTTTAAAAAAAAACCCCTGGGACGACACCAGGTGGCCATTTTTTCAATACGGCCCCAACAANGTCANCCTACACAAANCGCTTATTTAACCCGTGCAAAGTNTAACCGCGGCAAACACACAGGGCAACGTGGTTTCAACGGCANAACACGGGCACTTAAACACGCTGGCGTGCCAACANCCAACACTCCCACACACAANGGCAAATTTTANACACCCAATGTGTGAGCCGGTGGGGNACACAAACCCCACANAGGAAGAACAGCCCGGTCCTGCGATTATAGGTTAACCGCCGACGACAAAGGGTGGGGCANCANCGCAAACCAAGGTGNCCCCAACCTTTTGGGNAACCCACAACACNACCGTTCCCCGGCCAAACGCATTGGGCTNNTAAGCATTTCCGGGAAACACANCACGGTGTGGGAGAACACACNNAGNTGCNCCCCGCACNCGCATTCAACCGCAGCAATTAAACCCCAAACGAGCAACAGGTNGGNNCGCACCGGCCCCNGTGCCCCCCCCTGGAGCGCCCCCCAAGACACACAAGACAGCGACCCNCAACAAACCACACACAANCACAAGACACAACANACGGGCAGCGGTGGGGTAANCCAC]


>consensus_8987#1 CCTGNGGTTTATGTGGCGTTTCTGTCGAAGTGCCNGCAGCAAAATGTCTGTNAGCTGAGT GGAGTGTGACGAACGCAGAATTAAACCAAAAAAAAAAAAGAAAATGCCACACGAGTCAAC CGTGCACCGTGCACGACCTGTGATTGCTGTAGAATTGGTCAAGCATGANCACAGATCTTT CAAATAAGCACACACAGCAACACATAGCTTANAGTGCAATTAAAACCACACAAACAAAAC AAACAAACAAAAAAACTTTTGCCAAAAAACAAAGTCCAAATTGAAAGCCAAAGGGTCCCC CGGNTTTCTAAGGTTTAATTGGAGGACATGAGCCCCTGGTTACACAGAACTGGTTCAAAA CGGACACGGTGGCAGCCATCGGACAAAAGCACNGTTTCTCGGGGGACNNACACAACTTCT CCTTGGCGGCACACAACAACAACGGGACACATCACGGCCCACAANTAACACGCACAACTT TAAACAGNCAACCCAAATGGCCCCACTTTTGGTACACACATTTGGCCGCAACACGTTTAA AAAAAAACCCCTGGGACGACACCAGGTGGCCATTTTTTCAATACGGCCCCAACAANGTCA NCCTACACAAANCGCTTATTTAACCCGTGCAAAGTNTAACCGCGGCAAACACACAGGGCA ACGTGGTTTCAACGGCANAACACGGGCACTTAAACACGCTGGCGTGCCAACANCCAACAC TCCCACACACAANGGCAAATTTTANACACCCAATGTGTGAGCCGGTGGGGNACACAAACC CCACANAGGAAGAACAGCCCGGTCCTGCGATTATAGGTTAACCGCCGACGACAAAGGGTG GGGCANCANCGCAAACCAAGGTGNCCCCAACCTTTTGGGNAACCCACAACACNACCGTTC CCCGGCCAAACGCATTGGGCTNNTAAGCATTTCCGGGAAACACANCACGGTGTGGGAGAA CACACNNAGNTGCNCCCCGCACNCGCATTCAACCGCAGCAATTAAACCCCAAACGAGCAA CAGGTNGGNNCGCACCGGCCCCNGTGCCCCCCCCTGGAGCGCCCCCCAAGACACACAAGA CAGCGACCCNCAACAAACCACACACAANCACAAGACACAACANACGGGCAGCGGTGGGGT AANCCAC



consensusID : consensus_8987#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 865
fasta sequence
                              [TAATCCATTGTTGTATCTGGTCAGTCCACAAGTGAGGGATTGTTTCTCGCGCCAGCAACTGGTCATGCTAGTGCTGATCGTTAATATTGCCTTGGCTATTTTATTCTTTAAAATACTCACATAGCGTTGGCTCAGTCCATGTTTGCATTTCAGCATGTTTCTAAGAGAGGTGGCACTATAGAATAGCCGGAGGCAGAAATGAGGATAATATTTAAACGAACATTATGGGATAACTCTTGTCGCAGCAGGACGCTACAAAGAAGAAGAAGAAGAAGAAACCCCGAACCAAAATATTACAAAGAAAAAAACAAAGCTAAAATATAAAACTCTTGCCTCCCCCCTTAGATCAAGAAAACACACACACACACAAACAAACACAATCAAATTATACAACCACATACACAAAAAAACACAAACCGACAAGTGTAACCATTTTCCGCCCGCTGCATCTTTGCAATTGCAGACCAATTCAACGTG-TTTTTTTGTTCTAGTTTTTTGTTTAAATGAAAAATTGTTTTTGAACGACGGACGACCTCGGCCGAGGGATGGGGAAATCACAACTGTCGCCGGCGCAGCAGCAGCAGGACAAGGTGATAAAGGAGCGGTGTCCCGGGCAAACGTGTTAAGAAAGTGAGGCAATCAATTAGTGAGCATGGCATGGAGATGAAATCAATAAAATTGTGTATCTTTGTGCATCAATCATCAATCTAACGCAATTACGATCCATCCTTTACCTACGTAAAATATTTAAAAAGAAAGCGTGAAAGAAGGAGAAGTGCGGCGTTTCGTCGAAGGCCGCAGCAAAATGTCGCAGCTGAGGGAGGTNACGACGCAGAATTGACCAAAAAAATAACTCGGGGCGATC]

[+] EMBL BX613708             [TAATCCATTGTTGTATCTGGTCAGTCCACAAGTGAGGGATTGTTTCTCGCGCCAGCAACTGGTCATGCTAGTGCTGATCGTTAATATTGCCTTGGCTATTTTATTCTTTAAAATACTCACATAGCGTTGGCTCAGTCCATGTTTGCATTTCAGCATGTTTCTAAGAGAGGTGGCACTATAGAATAGCCGGAGGCAGAAATGAGGATAATATTTAAACGAACATTATGGGATAACTCTTGTCGCAGCAGGACGCTACAAAGAAGAAGAAGAAGAAGAAACCCCGAACCAAAATATTACAAAGAAAAAAACAAAGCTAAAATATAAAACTCTTGCCTCCCCCCTTAGATCAAGAAAACACACACACACACAAACAAACACAATCAAATTATACAACCACATACACAAAAAAACACAAACCGACAAGTGTAACCATTTTCCGCCCGCTGCATCTTTGCAATTGCAGACCAATTCAACGTG TTTTTTTGTTCTAGTTTTTTGTTTAAATGAAAAATTGTTTTTGAACGACGGACGACCTCGGCCGAGGGATGGGGAAATCACAACTGTCGCCGGCGCAGCAGCAGCAGGACAAGGTGATAAAGGAGCGGTGTCCCGGGCAAACGTGTTAAGAAAGTGAGGCAATCAATTAGTGAGCATGGCATGGAGATGAAATCAATAAAATTGTGTATCTTTGTGCATCAATCATCAATCTA                                                                                                                                                           ]
[+] EMBL BX614900             [                                                                                                                                                                                                                                                                                                                       AGCTAAAATATAAAACTCTTGCCTCCCCCCTTAGATCAAGAAAACACACACACACACAAACAAACACAATCAAATTATACAACCACATACACAAAAAAACACAAACCGACAAGTGTAACCATTTTCCGCCCGCTGCATCTTTGCAATTGCAGACCAATTCAACGTGTTTTTTTTGTTCTAGTTTTTTGTTTAAATGAAAAATTGTTTTTTAACGACGGACGACCTCGGCCGAGGGATGGGGAAATCACAACTGTCGCCGGCGCAGCAGCAGCAGGACAAGGTGATAAAGGAGCGGTGTCCCGGGCAAACGTGTTAAGAAAGTGAGGCAATCAATTAGTGAGCATGGCATGGAGATGAAATCAATAAAATTGTGTATCTTTGTGCATCAATCATCAATCTAACGCAATTACGATCCATCCTTTACCTACGTAAAATATTTAAAAAGAAAGCGTGAAAGAAGGAGAAGTGCGGCGTTTCGTCGA                                                                         ]
[-] EMBL AL930953             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TTTTTTTTTTAAATGAAAAATTGTTTTTGAACGACGGACGACCTCGGCCGAGGGATGGGGAAATCACAACTGTCGCCGGCGCAGCAGCAGCAGGACAAGGTGATAAAGGAGCGGTGTCCCGGGCAAACGTGTTAAGAAAGTGAGGCAATCAATTAGTGAGCATGGCATGGAGATGAAATCAATAAAATTGTGTATCTTTGTGCATCAATCATCAATCTAACGCAATTACGATCCATCCTTTACCTACGTAAAATATTTAAAAAGAAAGCGTGAAAGAAGGAGAAGTGCGGCGTTTCGTCGAAGGCCGCAGCAAAATGTCGCAGCTGAGGGAGGTNACGACGCAGAATTGACCAAAAAAATAACTCGGGGCGATC]


>consensus_8987#2 TAATCCATTGTTGTATCTGGTCAGTCCACAAGTGAGGGATTGTTTCTCGCGCCAGCAACT GGTCATGCTAGTGCTGATCGTTAATATTGCCTTGGCTATTTTATTCTTTAAAATACTCAC ATAGCGTTGGCTCAGTCCATGTTTGCATTTCAGCATGTTTCTAAGAGAGGTGGCACTATA GAATAGCCGGAGGCAGAAATGAGGATAATATTTAAACGAACATTATGGGATAACTCTTGT CGCAGCAGGACGCTACAAAGAAGAAGAAGAAGAAGAAACCCCGAACCAAAATATTACAAA GAAAAAAACAAAGCTAAAATATAAAACTCTTGCCTCCCCCCTTAGATCAAGAAAACACAC ACACACACAAACAAACACAATCAAATTATACAACCACATACACAAAAAAACACAAACCGA CAAGTGTAACCATTTTCCGCCCGCTGCATCTTTGCAATTGCAGACCAATTCAACGTGTTT TTTTGTTCTAGTTTTTTGTTTAAATGAAAAATTGTTTTTGAACGACGGACGACCTCGGCC GAGGGATGGGGAAATCACAACTGTCGCCGGCGCAGCAGCAGCAGGACAAGGTGATAAAGG AGCGGTGTCCCGGGCAAACGTGTTAAGAAAGTGAGGCAATCAATTAGTGAGCATGGCATG GAGATGAAATCAATAAAATTGTGTATCTTTGTGCATCAATCATCAATCTAACGCAATTAC GATCCATCCTTTACCTACGTAAAATATTTAAAAAGAAAGCGTGAAAGAAGGAGAAGTGCG GCGTTTCGTCGAAGGCCGCAGCAAAATGTCGCAGCTGAGGGAGGTNACGACGCAGAATTG ACCAAAAAAATAACTCGGGGCGATC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8987#0      ----------------------------------------------------------CC 2
consensus_8987#2      TAATCCATTGTTGTATCTGGTCAGTCCACAAGTGAGGGATTGTTTCTCGCGCCAGCAACT 60
consensus_8987#1      ------------------------------------------------------------
                                                                                  

consensus_8987#0      GCCCACGCGTCCGC-----GTTAATATTGCCTTGGCTATTTTATTCTTTAAAATACTCAC 57
consensus_8987#2      GGTCATGCTAGTGCTGATCGTTAATATTGCCTTGGCTATTTTATTCTTTAAAATACTCAC 120
consensus_8987#1      ----------------------------------------------CCTGNGGT--TTAT 12
                                                                      *    *  * * 

consensus_8987#0      ATAGCGTTGGCTCAGTCCATGTTTGCATTTCAGCATGTTTCTAAGAGAGGTGGCACTATA 117
consensus_8987#2      ATAGCGTTGGCTCAGTCCATGTTTGCATTTCAGCATGTTTCTAAGAGAGGTGGCACTATA 180
consensus_8987#1      GTGGCGTT---TCTGTCGAAGTGCCNGCAGCAAAATGTCTGTNAGCTGAGTGGA---GTG 66
                       * *****   ** *** * **        **  **** * * **    ****     * 

consensus_8987#0      GAATAGCCGGAGGCAGAAATGAGGATAATATTTAAACGAACATTATGGGATAACTCTTGT 177
consensus_8987#2      GAATAGCCGGAGGCAGAAATGAGGATAATATTTAAACGAACATTATGGGATAACTCTTGT 240
consensus_8987#1      TGACGAACGCAGAATTAAACCAAAAAAAAAAAAGAAAATGCCACACGAGTCAACCGTGCA 126
                        *    ** **    ***  *  * ** *    **    *   * * *  ***  *   

consensus_8987#0      CGCAGCAGGACGCTACAAAGAAGAAGAAGAAGAAGAAACCCCGAACCAAAATATTACAAA 237
consensus_8987#2      CGCAGCAGGACGCTACAAAGAAGAAGAAGAAGAAGAAACCCCGAACCAAAATATTACAAA 300
consensus_8987#1      CCGTGCACGACCTGTGATTGCTGTAGAATTGGTC--AAGCATGANCACAGATCTTTCAAA 184
                      *   *** ***     *  *  * ****   *    ** *  ** *  * ** ** ****

consensus_8987#0      GAAGAAAAAACAAAGCTAAAATATAAAACTCTTGCCTCCCCCCTTAGATCAAGAAAACAC 297
consensus_8987#2      GAA--AAAAACAAAGCTAAAATATAAAACTCTTGCCTCCCCCCTTAGATCAAGAAAACAC 358
consensus_8987#1      TAA--GCACACACAGC---AACACATAGCTTANAGTGC--------AATTAAAACCACAC 231
                       **    * *** ***   ** * * * **       *         ** ** *  ****

consensus_8987#0      ACACACACACAAACAAACACAATCAAATTATACAACCACATACACAAAAAAACACAAACC 357
consensus_8987#2      ACACACACACAAACAAACACAATCAAATTATACAACCACATACACAAAAAAACACAAACC 418
consensus_8987#1      AAACAAA-ACAAACAAACA-AAAAAACTTTTGC-------CAAAAAACAAAGTCCAAATT 282
                      * *** * *********** **  ** ** * *        * * ** ***   ****  

consensus_8987#0      GACAAGTGTAACCATTTTCCGCCCGCTGCATCTTTGCAATTGCAGACCA-ATTCAACGTG 416
consensus_8987#2      GACAAGTGTAACCATTTTCCGCCCGCTGCATCTTTGCAATTGCAGACCA-ATTCAACGTG 477
consensus_8987#1      GA-AAGCCAAAGGGTCCCCCGGNTTTCTAAGGTTT--AATTGGAGGACATGAGCCCCTGG 339
                      ** ***   **   *   ***        *  ***  ***** **  **    *  *  *

consensus_8987#0      TTTTTTTGTTCTAGTTTTTTGTTTAAATGAAAAATTGTTTTTGAACGACGG-ACGACCTC 475
consensus_8987#2      TTTTTTTGTTCTAGTTTTTTGTTTAAATGAAAAATTGTTTTTGAACGACGG-ACGACCTC 536
consensus_8987#1      TTACACAGAACTGGTTCAAAACGGACACGGTGG-CAGCCATCGGACAAAAGCACNGTTTC 398
                      **     *  ** ***        * * *       *   * * ** *  * **    **

consensus_8987#0      GGCCGAGGGATGGGGAAATCACAACTGTCGCCG-GCGCAGCAGCAGCAGGACAAG----- 529
consensus_8987#2      GGCCGAGGGATGGGGAAATCACAACTGTCGCCG-GCGCAGCAGCAGCAGGACAAG----- 590
consensus_8987#1      --TCGGGGGACNNACACAACTTCTCCTTGGCGGCACACAACAACAACGGGACACATCACG 456
                         ** ****     * * *    *  * ** *  * ** ** ** * *****       

consensus_8987#0      ----GTGATAAAGGAGCGGTGTCCCGGGCAAACGTGTTAAGAAAG--------TGAGGCA 577
consensus_8987#2      ----GTGATAAAGGAGCGGTGTCCCGGGCAAACGTGTTAAGAAAG--------TGAGGCA 638
consensus_8987#1      GCCCACAANTAACACGCACAACTTTAAACAGNCAACCCAAATGGCCCCACTTTTGGTACA 516
                             *  **   **           **  *     **             **   **

consensus_8987#0      ATCAATTAGTGAGCATGGCATGGAGATGAAATCAATAAAATTGTGT---ATCTTTGTGCA 634
consensus_8987#2      ATCAATTAGTGAGCATGGCATGGAGATGAAATCAATAAAATTGTGT---ATCTTTGTGCA 695
consensus_8987#1      CACATTTGGCCGCAACACGTTTAAAAAAAAACCCCTGGGACGACACCAGGTGGCCATTTT 576
                        ** ** *     *     *  * *  *** *  *   *          *     *   

consensus_8987#0      TCAATCATCAATCTAACGCAATTACGATCCATCCTTTACCTACGTAAAATATTTAAAAAG 694
consensus_8987#2      TCAATCATCAATCTAACGCAATTACGATCCATCCTTTACCTACGTAAAATATTTAAAAAG 755
consensus_8987#1      TTCAATACGGCCCCAACAANGTCANCCTACACAAANCGCTTATTTAACCCGTGCAAAGTN 636
                      *  *  *     * ***    * *   * **       * **  ***    *  ***   

consensus_8987#0      AAAGCGTGAAAGAAGGAGAAGTGCGGCGTTTCGTCGAAGGCCGCAGCAAAAATGTCGCAG 754
consensus_8987#2      AAAGCGTGAAAGAAGGAGAAGTGCGGCGTTTCGTCGAAGGCCGCAGCAAAA-TGTCGCAG 814
consensus_8987#1      TAACCGCGGCAAACACACAGG-GCAACGTGGTTTCAACGGC-ANAACACGGGCACTTAAA 694
                       ** ** *  * *   * * * **  ***    ** * ***   * **          * 

consensus_8987#0      CTGAGGGAGGTGACGAA-CGCAGAATTA----AACCAAAAAAAAAAAAGAAAAGCCACAC 809
consensus_8987#2      CTGAGGGAGGTNACGA--CGCAGAATTG----ACCAAAAAAATAACTCGGGGCGATC--- 865
consensus_8987#1      CACGCTGGCGTGCCAACANCCAACACTCCCACACACAANGGCAAATTTTANACACCCAAT 754
                      *     *  **  * *    **  * *     *   **     **               

consensus_8987#0      GAGTCAACCGGCACCGGCACGACCTGTGATTGCTGTAGAAT----TGGTAAGATGAAAAG 865
consensus_8987#2      ------------------------------------------------------------
consensus_8987#1      GTGTGAGCCGGTGGGGNACACAAACCCCACANAGGAAGAACAGCCCGGTCCTGCGATTAT 814
                                                                                  

consensus_8987#0      ATCTTAAATAGAAAAGAAAATAGCTAAGGAATAAACCACACAACAACAACAACAAAAACT 925
consensus_8987#2      ------------------------------------------------------------
consensus_8987#1      AGGTTAACCGCCGACGACAAAGGGTGGGGCANCANCGCAAACCAAGGTGNCCCCAACCTT 874
                                                                                  

consensus_8987#0      TTGCAAAACAAATCAATGAACCAAGGTCCCGTTTCTAGTTTGGAGCCGTAAAGTAAGAAG 985
consensus_8987#2      ------------------------------------------------------------
consensus_8987#1      TTGGGNAACCCACAACACNACCGTTCCCCGGCCAAACGCATTGGGCTNNTAAGCATTTCC 934
                                                                                  

consensus_8987#0      GAAGAAAATTGGAAAATTTGGAAAAAGAAAGCAAAAAATAACACAGCATGAAATGCAACT 1045
consensus_8987#2      ------------------------------------------------------------
consensus_8987#1      GGGAAACACANCACGGTGTGGGAGAACACACNNAGNTGCNCCCCGCACNCGCATTCAACC 994
                                                                                  

consensus_8987#0      AAACCGAAAGGATTAGCAAACAACTTCGATCGAACGAGTAGAAGATAGGGAAAACAAGAT 1105
consensus_8987#2      ------------------------------------------------------------
consensus_8987#1      GCAGCAATTAAACCCCAAACGAGCAACAGGTNGGNNCGCACCGGCCCCNGTGCCCCCCCC 1054
                                                                                  

consensus_8987#0      ACAGGCGGAACAGAGCGCGTGTACGAGGAAAAGCATGAAAGCGATGTATCGAAAGGAAAG 1165
consensus_8987#2      ------------------------------------------------------------
consensus_8987#1      TGGAGCGCCCCCCAAGACACACAAGACAGCGACCCNCAACAAACCACACACAANCACAAG 1114
                                                                                  

consensus_8987#0      CAGTAGTACAGTGGC-GCGCCGCCAAAAGCAACAAAAAAAAGCGGACAGGACGCGTGAAC 1224
consensus_8987#2      ------------------------------------------------------------
consensus_8987#1      ACACAACANACGGGCAGCGGTGGGGTAANCCAC--------------------------- 1147
                                                                                  

consensus_8987#0      CAATATGTGTAGCCGAAAAGCAGTCGAAAAACAGGAGTGAAACCAAACTAAAACCAAAAC 1284
consensus_8987#2      ------------------------------------------------------------
consensus_8987#1      ------------------------------------------------------------
                                                                                  

consensus_8987#0      CAACTAGATAAATCAATTGTAACACCGGACACAAATGTTGTTGCGCGCAGGAAGGAGTAA 1344
consensus_8987#2      ------------------------------------------------------------
consensus_8987#1      ------------------------------------------------------------
                                                                                  

consensus_8987#0      GAGAAGGAGGAGGACGAGAAGGAACTTTGCAGCAGATGCGAAAGCCAAATCTTACGAAAA 1404
consensus_8987#2      ------------------------------------------------------------
consensus_8987#1      ------------------------------------------------------------
                                                                                  

consensus_8987#0      CTTTGTTAACATAATTTTTAGCAAAAAGAAAAGAGAGGAGCGAATCTATCGTCGTGTAAC 1464
consensus_8987#2      ------------------------------------------------------------
consensus_8987#1      ------------------------------------------------------------
                                                                                  

consensus_8987#0      GTAAGCAGTAACGCGTGAATGTGGACGCTGGAATCAAAAAAGTCCTGGATCCTGTTTCAG 1524
consensus_8987#2      ------------------------------------------------------------
consensus_8987#1      ------------------------------------------------------------
                                                                                  

consensus_8987#0      ACTATTTCTTTCGTTTGTTTCGTTTCTGTACCAAAACCACAGGAATATTCAAATTTGCTT 1584
consensus_8987#2      ------------------------------------------------------------
consensus_8987#1      ------------------------------------------------------------
                                                                                  

consensus_8987#0      AAGGTCAAGCTCTTAAGATTCTAATACACAAAAAGTATGTTG 1626
consensus_8987#2      ------------------------------------------
consensus_8987#1      ------------------------------------------
                                                                




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)