cluster # 90

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Anopheles gambiae
cluster # 90 cluster # 90 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_90#0 length = 565 sequences # 1

consensus_90#1 length = 446 sequences # 1

consensusID : consensus_90#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 565
fasta sequence

                              [AGGCAGAATCTGCGCACGAGGGCACACCCAACTTATCATCATGAACACATCGTAGCAGCAGTCATCCTCTCCATCGTCGTCGTCGGTGCCATGTGGCGATTACGCCGCCCCGGCCAAGTACGAGGCGCCCGCCAAAGCGTACCACGCCCCGGGCCCGGGCTATCACGCTCCGGNTCACCACGCCCCGGGCCCGGGGCTAACACGCACCGGCTTCCCACACACGGGCGGATACGCTCAACACTCGGCTCCGAGGTTGTCACGCTTACGCCGCGAGGGCCCGCAATGGTCAAGTGCGGCGCTTACCTGCTGGTCGGCTGCGCTCCCAACAGTTGNCCACGGTGCCGTGCGTTCCCGGCCACGGNGGACACAGGTGGATACGCCGGCCCTGGCCANGNCCCGGGCATGGACCATGGATACGCCGGAACCGGCCACGGATACCGCTNCGTATCGTCCGAGGCTGACCAGGGCGTTCGGCNGGCTTTCGAGTTTCGAGGGAATAAGCGCGGNGACTGATCAACTGAGCNACTCTACNGGANCAACAGCTGGATCAACGACTGGAATAGAT]

[+] EMBL BX467675             [AGGCAGAATCTGCGCACGAGGGCACACCCAACTTATCATCATGAACACATCGTAGCAGCAGTCATCCTCTCCATCGTCGTCGTCGGTGCCATGTGGCGATTACGCCGCCCCGGCCAAGTACGAGGCGCCCGCCAAAGCGTACCACGCCCCGGGCCCGGGCTATCACGCTCCGGNTCACCACGCCCCGGGCCCGGGGCTAACACGCACCGGCTTCCCACACACGGGCGGATACGCTCAACACTCGGCTCCGAGGTTGTCACGCTTACGCCGCGAGGGCCCGCAATGGTCAAGTGCGGCGCTTACCTGCTGGTCGGCTGCGCTCCCAACAGTTGNCCACGGTGCCGTGCGTTCCCGGCCACGGNGGACACAGGTGGATACGCCGGCCCTGGCCANGNCCCGGGCATGGACCATGGATACGCCGGAACCGGCCACGGATACCGCTNCGTATCGTCCGAGGCTGACCAGGGCGTTCGGCNGGCTTTCGAGTTTCGAGGGAATAAGCGCGGNGACTGATCAACTGAGCNACTCTACNGGANCAACAGCTGGATCAACGACTGGAATAGAT]




>consensus_90#0
AGGCAGAATCTGCGCACGAGGGCACACCCAACTTATCATCATGAACACATCGTAGCAGCA
GTCATCCTCTCCATCGTCGTCGTCGGTGCCATGTGGCGATTACGCCGCCCCGGCCAAGTA
CGAGGCGCCCGCCAAAGCGTACCACGCCCCGGGCCCGGGCTATCACGCTCCGGNTCACCA
CGCCCCGGGCCCGGGGCTAACACGCACCGGCTTCCCACACACGGGCGGATACGCTCAACA
CTCGGCTCCGAGGTTGTCACGCTTACGCCGCGAGGGCCCGCAATGGTCAAGTGCGGCGCT
TACCTGCTGGTCGGCTGCGCTCCCAACAGTTGNCCACGGTGCCGTGCGTTCCCGGCCACG
GNGGACACAGGTGGATACGCCGGCCCTGGCCANGNCCCGGGCATGGACCATGGATACGCC
GGAACCGGCCACGGATACCGCTNCGTATCGTCCGAGGCTGACCAGGGCGTTCGGCNGGCT
TTCGAGTTTCGAGGGAATAAGCGCGGNGACTGATCAACTGAGCNACTCTACNGGANCAAC
AGCTGGATCAACGACTGGAATAGAT

consensusID : consensus_90#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 446
fasta sequence

                              [ACATCATTTATTATGCATCATGTTTTCCCATTGCTAACTTCACGCTTCGGCTGGGGTCGTCGTGTGCCTCGCCGTGTAAGGGGTCACGCGGAAGCATCATACAAGAACGAAACGAACGACAAGGGAAAGAAAAATACTTTCGCACGATTACAGCACACACTTTTCTCATTTTAAACACATAAAACGGTCTCGCGAGACTCGTTTGCGTACGACAAAAACACAGACACGCACGCTTCAATGATGTTTAGTACAAATATATTGCTGTCTTTAAAGAAAAGCATCCATTAGCTGCATCGGTTTATGGCCGATTTGGTTCCCGATTTACTTTCCTCCTAATCTGTCCTTCTGTCTGCTTGCTTCTCGCACTCCCAGGAGATTCCCATTTTATACCATTTTTTTACACACACTTACATACAGACATTGCGTCTTGCTTTGGCTGCTCTTCT]

[+] EMBL BX616607             [ACATCATTTATTATGCATCATGTTTTCCCATTGCTAACTTCACGCTTCGGCTGGGGTCGTCGTGTGCCTCGCCGTGTAAGGGGTCACGCGGAAGCATCATACAAGAACGAAACGAACGACAAGGGAAAGAAAAATACTTTCGCACGATTACAGCACACACTTTTCTCATTTTAAACACATAAAACGGTCTCGCGAGACTCGTTTGCGTACGACAAAAACACAGACACGCACGCTTCAATGATGTTTAGTACAAATATATTGCTGTCTTTAAAGAAAAGCATCCATTAGCTGCATCGGTTTATGGCCGATTTGGTTCCCGATTTACTTTCCTCCTAATCTGTCCTTCTGTCTGCTTGCTTCTCGCACTCCCAGGAGATTCCCATTTTATACCATTTTTTTACACACACTTACATACAGACATTGCGTCTTGCTTTGGCTGCTCTTCT]




>consensus_90#1
ACATCATTTATTATGCATCATGTTTTCCCATTGCTAACTTCACGCTTCGGCTGGGGTCGT
CGTGTGCCTCGCCGTGTAAGGGGTCACGCGGAAGCATCATACAAGAACGAAACGAACGAC
AAGGGAAAGAAAAATACTTTCGCACGATTACAGCACACACTTTTCTCATTTTAAACACAT
AAAACGGTCTCGCGAGACTCGTTTGCGTACGACAAAAACACAGACACGCACGCTTCAATG
ATGTTTAGTACAAATATATTGCTGTCTTTAAAGAAAAGCATCCATTAGCTGCATCGGTTT
ATGGCCGATTTGGTTCCCGATTTACTTTCCTCCTAATCTGTCCTTCTGTCTGCTTGCTTC
TCGCACTCCCAGGAGATTCCCATTTTATACCATTTTTTTACACACACTTACATACAGACA
TTGCGTCTTGCTTTGGCTGCTCTTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_90#0      AGGCAGAATCTGCGCACGAGGGCACACCCAACTTATCATCATGAACACATCGTAGCAGCA 60
consensus_90#1      ------------------------------------------------------------
                                                                                

consensus_90#0      GTCATCCTCTCCATCGTCGTCGTCGGTGCCATGTGGCGATTACGCCGCCCCGGCCAAGTA 120
consensus_90#1      -----------------------------------------ACATCATTT--ATTATGCA 17
                                                             **  *         * * *

consensus_90#0      CGAGGCGCCCGCCAAAGCGTACCACGC-CCCGGGCCCGGGCTATCACGCTCCGGNTCACC 179
consensus_90#1      TCATGTTTTC-CCATTGCTAACTTCACGCTTCGGCTGGGGTCGTCGTGTGCC---TCGCC 73
                      * *    * ***  **  **  * * *   ***  ***   **  *  **   ** **

consensus_90#0      ACGCCCCGGGCCCGGGGCTAACA-CGCACCGGCTTCCCACACACGG-GCGGATACGCTCA 237
consensus_90#1      GTGTAAGGGGTCACGCGGAAGCATCATACAAGAACGAAACGAACGACAAGGGAAAGAAAA 133
                      *    *** *  * *  * ** *  **  *      **  ***    **  * *   *

consensus_90#0      ACACTCGGCTCCGAGGTTGTCACGCTTACGCCGCGAGGGCCCGCAATGGTCAAGTGCGGC 297
consensus_90#1      ATACTT--TCGCACGATTACAGCACACACTTTTC------TCATTTTAAACACATAAAAC 185
                    * ***      *  * **    * *  **    *       *    *   **  *    *

consensus_90#0      GCTTACCTGCTGGTCGGCTGCGCTCCCAACAGTTGNCCACGGTGCCGTGCGTTCCCGGCC 357
consensus_90#1      GGTCTCGCGAGACTCGTTTGCGTA--CGACAA--AAACACAGACACGCACGCTTC-AATG 240
                    * *  *  *    ***  ****    * ***      *** *   **  ** * *     

consensus_90#0      ACGGNGGACACAGGTGGATACGCCGGCCCTGGCCANGNCCCGGGCATGGACCATGGATAC 417
consensus_90#1      ATGTTTAGTACAAATATAT-TGCTGTCTTTAAAGAAAAGC-ATCCATTAGC--TGCATCG 296
                    * *      ***  *  **  ** * *  *    *    *    ***   *  ** **  

consensus_90#0      GCCGGAACCGGCCACGGATACCGCTNCG-TATCGTCCGAGGCTGACCAGGGCGTTCGGCN 476
consensus_90#1      GTTTATGGCCGATTTGGTTCCCGATTTACTTTCCTCCTAATCTGTCCTTC-TGTCTGCTT 355
                    *       * *    ** * *** *    * ** *** *  *** **     **  *   

consensus_90#0      GGCTTTCGAGTTTCGAGGGAATAAGCGCGGNGACTGATCAACTGAGCNACTCTACNGGAN 536
consensus_90#1      GCTTCTCGCACTCCCAGGAGATTCCCATTTTATACCATTTTTTTACACACACTTACATAC 415
                    *  * ***   * * ***  **   *          **    * *   ** **     * 

consensus_90#0      CAACAGCTGGATCAACGACTGGAATAGAT---- 565
consensus_90#1      AGACA-TTGCGTCT-TGCTTTGGCTGCTCTTCT 446
                      ***  **  **   *  * *  *