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Anopheles gambiae
cluster # 9065 cluster # 9065       Sequences # 14       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9065#0 length = 797 sequences # 5  
consensus_9065#1 length = 632 sequences # 2  
consensus_9065#2 length = 621 sequences # 4  
consensus_9065#3 length = 589 sequences # 2  
consensus_9065#4 length = 515 sequences # 1  

consensusID : consensus_9065#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 797
fasta sequence
                              [CAGATCCCCACGAGGGTTTTATTCACAAAATTCGCCTCCACACTGTTATTAACGTTTGTTTTTCCACTTTTAGCCACTTACGCAAAGCTTCCGCAATGGCCGGCGTTATCAAGAAGGCTACCGGATTGACCGGATTGCACGTGGCCAAGAATCCGCACCACACGCTAACGGCGCTGTACAACAAGATCCTGCGTGCCGTCTCGAAGATGCCCCAGGATGCGGCCTACCGACGCTACACCGAGCAGATCGTATCCGAGCGTGCCAAGGTGGTCGCCACGACTCCGAATGTGCGTGAAATCGAGCAAAAGATCAACTGTGGCCAGGTGGAGGAGCTGATCGTGCAGGCAGAAAACGAGCTGACGCTCGCGCGCAAGATGCTCGGCTGGAAACCCTGGGAACCGCTGGCCAAGCAGGCACCGGCCAGCCAGTGGGCCTGGCCACCGGCGAACCTGCCCGAGCTGAAGTAAATCTCG-CCCCGCGGGTGTTCTTTTGTCCCTTTTCACACCACACCAATATTCTTCTCACAGAGACACACACTTGTAGGCAATGCAAAATCGGTTGTTTAGGGTCGCGTATGGCGTGTAAATAAAAAAAACAACAACAGGCAACAACACGTGCGGCCATANAGGAACACGGTGAAAACAAGACACAACNCNCACAACAAAGTGCGAACGACAGCACGAACGAAACCAGGCATTGTTGCGGACCGCAAAGGCTTTATTCCCCTTTTAAGTNACGGGGTAAACTTTTTCAGCCTTGGGCAACTTGGCCCCGTCCGGTTTTTACAAACCGTCGTT]

[+] EMBL BX467486             [CAGATCCCCACGAGGGTTTTATTCACAAAATTCGCCTCCACACTGTTATTAACGTTTGTTTTTCCACTTTTAGCCACTTACGCAAAGCTTCCGCAATGGCCGGCGTTATCAAGAAGGCTACCGGATTGACCGGATTGCACGTGGCCAAGAATCCGCACCACACGCTAACGGCGCTGTACAACAAGATCCTGCGTGCCGTCTCGAAGATGCCCCAGGATGCGGCCTACCGACGCTACACCGAGCAGATCGTATCCGAGCGTGCCAAGGTGGTCGCCACGACTCCGAATGTGCGTGAAATCGAGCAAAAGATCAACTGTGGCCAGGTGGAGGAGCTGATCGTGCAGGCAGAAAACGAGCTGACGCTCGCGCGCAAGATGCTCGGCTGGAAACCCTGGGAACCGCTGGCCAAGCAGGCACCGGCCAGCCAGTGGGCCTGGCCACCGGCGAACCTGCCCGAGCTGAAGTAAATCTCG CCCCGCGGGTGTTCTTTTGTCCCTTTTCACACCACACCAATATTCTTCTCACAGAGACACACACTTGTAGGCAATGCAAAATCGGTTGTTTAGGGTCGCGTATGGCGTGTAAATAAAAAAAACAACAACAGGCAACAACACGTGCGGCCATANAGGAACACGGTGAAAACAAGACACAACNCNCACAACAAAGTGCGAACGACAGCACGAACGAAACCAGGCATTGTTGCGGACCGCAAAGGCTTTATTCCCCTTTTAAGTNACGGGGTAAACTTTTTCAGCCTTGGGCAACTTGGCCCCGTCCGGTTTTTACAAACCGTCGTT]
[+] EMBL BM602174             [                                                          ccggagCAC TCTCGCCACTTACGCAAAGCTTCCGCAATGGCCGGCGTTATCAAGAAGGCTACCGGATTGACCGGATTGCACGTGGCCAAGAATCCGCACCACACGTTGACGGCGCTGTACAACAAGATCCTGCGTGCCGTCTCGAAGATGCCCCAGGACGCGGCCTACCGACGCTACACCGAGCAGATCGTATCCGAGCGTGCCAAGGTGGTCGCCACGACTCCGAATGTGCGTGAAATCGAGCAAAAGATCAACTGTGGCCAGGTGGAGGAGCTGATCGTGCAGGCAGAAAACGAGCTGACGCTCGCGCGCAAGATGCTCGGCTGGAAACCCTGGGAACCGCTGGCCAAGCAGGCACCGGCCAGCCAGTGGGCCTGGCCACCGGCAAACCTTCCCGAGCTGAAGTAAATCTCGCCCCCGGGAGAGTTCATTCGTCCCTTTTC CACCACACCAATATTCTTCTCACAGAGACACACACTTGTAGGCAATGCAAAATCGGTTGTTTAGGGTCGTATATGGCGTGTAAATAAAAAAA  AACAACAGGCAACAACACGTGCGGCCATA AGG                                                                                                                                                                        ]
[+] EMBL BM624853             [                                                                                        ccgCGCAATGGCCGGCGTTATCAAGAAGGCTACCGGATTGACCGGATTGCACGTGGCCAAGAATCCGCACCACACGCTAACGGCGCTGTACAACAAGATCCTGCGTGCCGTCTCGAAGATGCCCCAGGATGCGGCCTACCGACGCTACACCGAGCAGATCGTATCCGAGCGTGCCAAGGTGGTCGCCACGACTCCGAATGTGCGTGAAATCGAGCAAAAGATCAACTGTGGCCAGGTGGAGGAGCTGATCGTGCAGGCAGAAAACGAGCTGACGCTCGCGCGCAAGATGCTCGGCTGGAAACCCTGGGAACCGCTGGCCAAGCAGGCACCGGCCAGCCAGTGGGCCTGGCCACCGGCGAACCTGCCCGAGCTGAAGTAAATCTCG CCCCGCGGGTGTTCTTTTGTCCCTTTTCACACCACACCAATATTCTTCTCACAGAGACACACACTTGTAGGCAATGCAAAATCGGTTGTTTAGGGTCGCGTATGGCGTGTAAAT                                                                                                                                                                                                                  ]
[+] EMBL BM618198             [                                                                                            GCAATGGCCGGCGTTATCAAGAAGGCTACCGGATTGACCGGATTGCACGTGGCCAAGAATCCGCACCACACGCTAACGGCGCTGTACAACAAGATCCTGCGTGCCGTCTCGAAGATGCCCCAGGATGCGGCCTACCGACGCTACACCGAGCAGATCGTATCCGAGCGTGCCAAGGTGGTCGCCACGACTCCGAATGTGCGTGAAATCGAGCAAAAGATCAACTGTGGCCAGGTGGAGGAGCTGATCGTGCAGGCAGAAAACGAGCTGACGCTCGCGCGCAAGATGCTCGGCTGGAAACCCTGGGAACCGCTGGCCAAGCAGGCACCGGCCAGCCAGTGGGCCTGGCCACCGGCGAACCTGCCCGAGCTGAAGTAAATCTCG CCCCGCGGGTGTTCTTTTGTCCCTTTTCACACCACACCAATATTCTTCTCACAGAGACACACACTTGTAGGCAATGCAAAATCGGTTGTTTA                                                                                                                                                                                                                                        ]
[-] EMBL CNS08GCP             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ccCCACCCCAATATTCTTCTTACAGAGAAAAACACTTGTAGGCAATGCAAAATCGGTTGTTTAGGGTCGCGTTTGGCGTGTAAATA                                                                                                                                                                                                                 ]


>consensus_9065#0 CAGATCCCCACGAGGGTTTTATTCACAAAATTCGCCTCCACACTGTTATTAACGTTTGTT TTTCCACTTTTAGCCACTTACGCAAAGCTTCCGCAATGGCCGGCGTTATCAAGAAGGCTA CCGGATTGACCGGATTGCACGTGGCCAAGAATCCGCACCACACGCTAACGGCGCTGTACA ACAAGATCCTGCGTGCCGTCTCGAAGATGCCCCAGGATGCGGCCTACCGACGCTACACCG AGCAGATCGTATCCGAGCGTGCCAAGGTGGTCGCCACGACTCCGAATGTGCGTGAAATCG AGCAAAAGATCAACTGTGGCCAGGTGGAGGAGCTGATCGTGCAGGCAGAAAACGAGCTGA CGCTCGCGCGCAAGATGCTCGGCTGGAAACCCTGGGAACCGCTGGCCAAGCAGGCACCGG CCAGCCAGTGGGCCTGGCCACCGGCGAACCTGCCCGAGCTGAAGTAAATCTCGCCCCGCG GGTGTTCTTTTGTCCCTTTTCACACCACACCAATATTCTTCTCACAGAGACACACACTTG TAGGCAATGCAAAATCGGTTGTTTAGGGTCGCGTATGGCGTGTAAATAAAAAAAACAACA ACAGGCAACAACACGTGCGGCCATANAGGAACACGGTGAAAACAAGACACAACNCNCACA ACAAAGTGCGAACGACAGCACGAACGAAACCAGGCATTGTTGCGGACCGCAAAGGCTTTA TTCCCCTTTTAAGTNACGGGGTAAACTTTTTCAGCCTTGGGCAACTTGGCCCCGTCCGGT TTTTACAAACCGTCGTT



consensusID : consensus_9065#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 632
fasta sequence
                              [CTGTTGGCCTACTGATAATATTATTTTCCCAGTCTCGAGGGCTCTCGCAACTTACACAAAGCTTCCGCAATGGCCGGCGTTATCAAGAAGGCTACCGGATTGACCGGATTGCACGTGGCCAAGAATCCGCACCACACGCTAACGGCGCTGTACAACAAGATCCTGCGTGCCGTCTCGAAGATGCCCCAGGATGCGGCCTACCGACGCTACACCGAGCAGATCGTATCCGAGCGTGCCAAGGTGGTCGCCACGACTCCGAATGTGCGTGAAATCGAGCAAAAGATCAACTGTGGCCAGGTGGAGGAGCTGATCGTGCAGGCAGAACAAAGAGCTGA-G-TCGCGCGCAAGATGCTCGGCTGGAAACCCTGGGAACCGCTGGCCAAGCAGGCACCGGCCAGCCAGTGGGCCTGGCCACCGGCGAACCTGCCCGAGCTGAAGTAAATCTCGCCCCGCGGGTGTTCTTTTGTCCCTTTTCACACCACACCAATATTCTTCTCGACAGAGACACACACTTGTAGGCAATGCAAAATCGGTTGTTTAGGGTCGCGTATGGCGTGTAAATAAAAAAAAACAACAACAGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGACCTTTT]

[-] EMBL CNS08FQQ             [CTGTTGGCCTACTGATAATATTATTTTCCCAGTCTCGAGGGCTCTCGCAACTTACACAAAGCTTCCGCAATGGCCGGCGTTATCAAGAAGGCTACCGGATTGACCGGATTGCACGTGGCCAAGAATCCGCACCACACGCTAACGGCGCTGTACAACAAGATCCTGCGTGCCGTCTCGAAGATGCCCCAGGATGCGGCCTACCGACGCTACACCGAGCAGATCGTATCCGAGCGTGCCAAGGTGGTCGCCACGACTCCGAATGTGCGTGAAATCGAGCAAAAGATCAACTGTGGCCAGGTGGAGGAGCTGATCGTGCAGGCAGAACAAAGAGCTGA G TCGCGCGCAAGATGCTCGGCTGGAAACCCTGGGAACCGCTGGCCAAGCAGGCACCGGCCAGCCAGTGGGCCTGGCCACCG                                                                                                                                                                                                                        ]
[+] EMBL CNS08GCO             [                                                cACTTACACAAAGCTTCCGCAATGGCCGGCGTTATCAAGAAGGCTACCGGATTGACCGGATTGCACGTGGCCAAGAATCCGCACCACACGCTAACGGCGCTGTACAACAAGATCCTGCGTGCCGTCTCGAAGATGCCCCAGGATGCGGCCTACCGACGCTACACCGAGCAGATCGTATCCGAGCGTGCCAAGGTGGTCGCCACGACTCCGAATGTGCGTGAAATCGAGCAAAAGATCAACTGTGGCCAGGTGGAGGAGCTGATCGTGCAGGCAGAA AACGAGCTGACGCTCGCGCGCAAGATGCTCGGCTGGAAACCCTGGGAACCGCTGGCCAAGCAGGCACCGGCCAGCCAGTGGGCCTGGCCACCGGCGAACCTGCCCGAGCTGAAGTAAATCTCGCCCCGCGGGTGTTCTTTTGTCCCTTTTCACACCACACCAATATTCTTCTCGACAGAGACACACACTTGTAGGCAATGCAAAATCGGTTGTTTAGGGTCGCGTATGGCGTGTAAATAAAAAAAAACAACAACAGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGACCTTTT]


>consensus_9065#1 CTGTTGGCCTACTGATAATATTATTTTCCCAGTCTCGAGGGCTCTCGCAACTTACACAAA GCTTCCGCAATGGCCGGCGTTATCAAGAAGGCTACCGGATTGACCGGATTGCACGTGGCC AAGAATCCGCACCACACGCTAACGGCGCTGTACAACAAGATCCTGCGTGCCGTCTCGAAG ATGCCCCAGGATGCGGCCTACCGACGCTACACCGAGCAGATCGTATCCGAGCGTGCCAAG GTGGTCGCCACGACTCCGAATGTGCGTGAAATCGAGCAAAAGATCAACTGTGGCCAGGTG GAGGAGCTGATCGTGCAGGCAGAACAAAGAGCTGAGTCGCGCGCAAGATGCTCGGCTGGA AACCCTGGGAACCGCTGGCCAAGCAGGCACCGGCCAGCCAGTGGGCCTGGCCACCGGCGA ACCTGCCCGAGCTGAAGTAAATCTCGCCCCGCGGGTGTTCTTTTGTCCCTTTTCACACCA CACCAATATTCTTCTCGACAGAGACACACACTTGTAGGCAATGCAAAATCGGTTGTTTAG GGTCGCGTATGGCGTGTAAATAAAAAAAAACAACAACAGGCAAAAAAAAAAAAAAAAAAA AAAAAAAAAAGGCCACATGTGCCCGACCTTTT



consensusID : consensus_9065#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 621
fasta sequence
                              [GAGGTACGTTTGTCGCGTGAGGAAAAAG-AAATA-TA-TTTCCCAGTCTCGAGCACTCTCGCCACTTACGCAAAGCTTCCGCAATGGCCGGCGTTATCAAGAAGGCTACCGGATTGACCGGATTGCACGTGGCCAAGAATCCGCACCACACGCTAACGGCGCTGTACAACAAGATCCTGCGTGCCGTCTCGAAGATGCCCCAGGATGCGGCCTACCGACGCTACACCGAGCAGATCGTATCCGAGCGTGCCAAGGTGGTCGCCACGACTCCGAATGTGC-GTGAAATC-GAGCAAAAGATCAACTGTGGCCAGGTGGAGGAGCTGATCGTGCAGGCAGAAAACGAGCTGAC-GCTCGCGCGCAAGATGCTC-GGCTGGAAACCCTGGGAACC-GCTGGCCAAGCAGGCACCGGCCAGCCAGTGGGCCTGGCCACCGGCGAACCTGCCCGAGCTGAAGTAAATCTCGCCCCCGGGAGAGTTCATTCGTCCCTTTTC-CACCACACCAATATTCTTCTCACAGAGACACACACTTGTAGGCAATGCAAAATCGGTTGTTTAGGGTCGTATATGGCGTGTAAATAAAAAAAAAAATACAACAAAGGCCACATGTGCTCGAGCTGCCGGGGCCC]

[+] EMBL AL930408             [GAGGTACGTTTGTCGCGTGAGGAAAAAG AAATA TA TTTCCCAGTCTCGAGCACTCTCGCCACTTACGCAAAGCTTCCGCAATGGGCGGCGTTATCAAGAAGGCTACCGGATTGACCGGATTGGACGTGGGCAAGAATCCGCA CACACGCTAACGGCGCTGTACAACAAGATCCTGCGTGCCGTCTCGAAGATG CCCAGGATGCTGGCTACCGACGCTACACCGAGCAGATCGTATCCGAGCGTGCCAAGGTGGTCGCCACGACTCCGAATGTGCTGTGAAATCTGAGCAAAAGATCAACTGTGGCCAGGTGGAGGAGCTGATCGTGCAGGCAGAAAACGAGCTGACTGCTCGCGCGCAAGATGCTCTGGCTGGAAACCCTGGGAACCTGNTGGCCAAGCAGGCACCGGCCAGCCAGTGGGCCTGGCCACCGGTGAACCTGCCCGAGCTGAAGTAAATCTCGCCCCgcg                                                                                                                                                             ]
[+] EMBL BM611177             [        ccgGTCGCGTGAGGAAAAAGAAAATATTATTTTCCCAGTCTCGAGCACTCTCGCCACTTACGCAAAGCTTCCGCAATGGCCGGCGTTATCAAGAAGGCTACCGGATTGACCGGATTGCACGTGGCCAAGAATCCGCACCACACGTTGACGGCGCTGTACAACAAGATCCTGCGTGCCGTCTCGAAGATGCCCCAGGACGCGGCCTACCGACGCTACACCGAGCAGATCGTATCCGAGCGTGCCAAGGTGGTCGCCACGACTCCGAATGTGC GTGAAATC GAGCAAAAGATCAACTGTGGCCAGGTGGAGGAGCTGATCGTGCAGGCAGAAAACGAGCTGAC GCTCGCGCGCAAGATGCTC GGCTGGAAACCCTGGGAACC GCTGGCCAAGCAGGCACCGGCCAGCCAGTGGGCCTGGCCACCCCCAAACCTTCCCGAGCTGAAGTAAATCTCGCCCCCGGGAGAGTTCATTCGTCCCTTTTC CACCACACCAATATTCTTCTCACAGAGACACACACTTGTAGGCAATGCAAAATCGGTTGTTTAGGGTCGTATATGGCGTGTAAATA                                                ]
[+] EMBL BM655024             [                                               ccgGAGCACTCTCGCCACTTACGCAAAGCTTCCGCAATGGCCGGCGTTATCAAGAAGGCTACCGGATTGACCGGATTGCACGTGGCCAAGAATCCGCACCACACGTTGACGGCGCTGTACAACAAGATCCTGCGTGCCGTCTCGAAGATGCCCCAGGACGCGGCCTACCGACGCTACACCGAGCAGATCGTATCCGAGCGTGCCAAGGTGGTCGCCACGACTCCGAATGTGC GTGAAATC GAGCAAAAGATCAACTGTGGCCAGGTGGAGGAGCTGATCGTGCAGGCAGAAAACGAGCTGAC GCTCGCGCGCAAGATGCTC GGCTGGAAACCCTGGGAACC GCTGGCCAAGCAGGCACCGGCCAGCCAGTGGGCCTGGCCACCGGCAAACCTTCCCGAGCTGAAGTAAATCTCGCCCCCGGGAGAGTTCATTCGTCCCTTTTC CACCACACCAATATTCTTCTCACAGAGACACACACTTGTAGGCAATGCAAAATCGGTTGTTTAGGGTCGTATATGGCGTGTA                                                    ]
[+] EMBL CNS08FQP             [                                                              CACTTACACAAAGCTTCCGCAATGGCCGGCGTTATCAAGAAGGCTACCGGATTGACCGGATTGCACGTGGCCAAGAATCCGCACCACACGCTAACGGCGCTGTACAACAAGATCCTGCGTGCCGTCTCGAAGATGCCCCAGGATGCGGCCTACCGACGCTACACCGAGCAGATCGTATCCGAGCGTGCCAAGGTGGTCGCCACGACTCCGAATGTGC GTGAAATC GAGCAAAAGATCAACTGTGGCCAGGTGGAGGAGCTGATCGTGCAGGCAGAAAACGAGCTGAC GCTCGCGCGCAAGATGCTC GGCTGGAAACCCTGGGAACC GCTGGCCAAGCAGGCACCGGCCAGCCAGTGGGCCTGGCCACCGGCGAACCTGCCCGAGCTGAAGTAAATCTCG CCCCGCGGGTGTTCTTTTGTCCCTTTTCACACCACACCAATATTCTTCTCACAGAGACACACACTTGTAGGCAATGCAAAATCGGTTGTTTAGGGTCGCGTATGGCGTGTAAATAAAAAAAAAAATACAACAAAGGCCACATGTGCTCGAGCTGCCGGGGCCC]


>consensus_9065#2 GAGGTACGTTTGTCGCGTGAGGAAAAAGAAATATATTTCCCAGTCTCGAGCACTCTCGCC ACTTACGCAAAGCTTCCGCAATGGCCGGCGTTATCAAGAAGGCTACCGGATTGACCGGAT TGCACGTGGCCAAGAATCCGCACCACACGCTAACGGCGCTGTACAACAAGATCCTGCGTG CCGTCTCGAAGATGCCCCAGGATGCGGCCTACCGACGCTACACCGAGCAGATCGTATCCG AGCGTGCCAAGGTGGTCGCCACGACTCCGAATGTGCGTGAAATCGAGCAAAAGATCAACT GTGGCCAGGTGGAGGAGCTGATCGTGCAGGCAGAAAACGAGCTGACGCTCGCGCGCAAGA TGCTCGGCTGGAAACCCTGGGAACCGCTGGCCAAGCAGGCACCGGCCAGCCAGTGGGCCT GGCCACCGGCGAACCTGCCCGAGCTGAAGTAAATCTCGCCCCCGGGAGAGTTCATTCGTC CCTTTTCCACCACACCAATATTCTTCTCACAGAGACACACACTTGTAGGCAATGCAAAAT CGGTTGTTTAGGGTCGTATATGGCGTGTAAATAAAAAAAAAAATACAACAAAGGCCACAT GTGCTCGAGCTGCCGGGGCCC



consensusID : consensus_9065#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 589
fasta sequence
                              [GCAAGAATTCCCACGAGNTTAAAATATTATTTTCCCAGTCTCGAGCACTCTCGCCACTTACGCAAAGCTTCCGCAATGGCCGGCGTTATCAAGAAGGCTACCGGATTGACCGGATTGCACGTGGCCAAGAATCCGCACCACACGCTAACGGCGCTGTACAACAAGATCCTGCGTGCCGTCTCGAAGATGCCCCAGGATGCGGCCTACCGACGCTACACCGAGCAGATCGTATCCGAGCGTGCCAAGGTGGTCGCCACGACTCCGAATGTGCGTGAAATCGAGCAAAAGATCAACTGTGGCCAGGTGGAGGAGCTGATCGTGCAGGCAGAAAACGAGCTGACGCTCGCGCGCAAGATGCTCGGCTGGAAACCCTGGGAACCGCTGGCCAAGCAGGCACCGGCCAGCCAGTGGGCCTGGCACCGGCGAACCTGCCCGAGCTGAAGTAAATCTCGCCCCGCGGGTGTTCTTTTGTCCCTTTTCACACCAAACCAATATTCTTCTCACAGAGACACACACTTGTAGGCAATGCAAAATCGGTTGTATAGGGTCGCGTATGGCGGTGTAAAAACAACAAAACAAACAAACAAGG]

[+] EMBL AL713824             [GCAAGAATTCCCACGAGNTTAAAATATTATTTTCCCAGTCTCGAGCACTCTCGCCACTTACGCAAAGCTTCCGCAATGGCCGGCGTTATCAAGAAGGCTACCGGATTGACCGGATTGCACGTGGCCAAGAATCCGCACCACACGCTAACGGCGCTGTACAACAAGATCCTGCGTGCCGTCTCGAAGATGCCCCAGGATGCGGCCTACCGACGCTACACCGAGCAGATCGTATCCGAGCGTGCCAAGGTGGTCGCCACGACTCCGAATGTGCGTGAAATCGAGCAAAAGATCAACTGTGGCCAGGTGGAGGAGCTGATCGTGCAGGCAGAAAACGAGCTGACGCTCGCGCGCAAGATGCTCGGCTGGAAACCCTGGGAACCGCTGGCCAAGCAGGCACCGGCCAGCCAGTGGGCCTGGCACCGGCGAACCTGCCCGAGCTGAAGTAAATCTCGCCCCGCGGGTGTTCTTTTGTCCCTTTTCACACCAAACCAATATTCTTCTCACAGAGACACACACTTGTAGGCAATGCAAAATCGGTTGTATAGGGTCGCGTATGGCGGTGTAAAAACAACAAAACAAACAAACAAGG]
[+] EMBL BM627071             [                                          ccGCACTCTCGCCACTTACGCAAAGCTTCCGCAATGGCCGGCGTTATCAAGAAGGCTACCGGATTGACCGGATTGCACGTGGCCAAGAATCCGCACCACACGCTAACGGCGCTGTACAACAAGATCCTGCGTGCCGTCTCGAAGATGCCCCAGGATGCGGCCTACCGACGCTACACCGAGCAGATCGTATCCGAGCGTGCCAAGGTGGTCGCCACGACTCCGAATGTGCGTGAAATCGAGCAAAAGATCAACTGTGGCCAGGTGGAGGAGCTGATCGTGCAGGCAGAAAACGAGCTGACGCTCGCGCGCAAGATGCTCG                                                                                                                                                                                                                                    ]


>consensus_9065#3 GCAAGAATTCCCACGAGNTTAAAATATTATTTTCCCAGTCTCGAGCACTCTCGCCACTTA CGCAAAGCTTCCGCAATGGCCGGCGTTATCAAGAAGGCTACCGGATTGACCGGATTGCAC GTGGCCAAGAATCCGCACCACACGCTAACGGCGCTGTACAACAAGATCCTGCGTGCCGTC TCGAAGATGCCCCAGGATGCGGCCTACCGACGCTACACCGAGCAGATCGTATCCGAGCGT GCCAAGGTGGTCGCCACGACTCCGAATGTGCGTGAAATCGAGCAAAAGATCAACTGTGGC CAGGTGGAGGAGCTGATCGTGCAGGCAGAAAACGAGCTGACGCTCGCGCGCAAGATGCTC GGCTGGAAACCCTGGGAACCGCTGGCCAAGCAGGCACCGGCCAGCCAGTGGGCCTGGCAC CGGCGAACCTGCCCGAGCTGAAGTAAATCTCGCCCCGCGGGTGTTCTTTTGTCCCTTTTC ACACCAAACCAATATTCTTCTCACAGAGACACACACTTGTAGGCAATGCAAAATCGGTTG TATAGGGTCGCGTATGGCGGTGTAAAAACAACAAAACAAACAAACAAGG



consensusID : consensus_9065#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 515
fasta sequence
                              [CCGCCCACGCGTCCGCCCACGCGTCCGCGCAAAGCTTCCGCAATGGCCGGCGTTATCAAGAAGGCTACCGGATTGACCGGATTGCACGGGGCCAAGAATCCGCACCACACGTTGACGGCGCTGTACAACAAGATCCTGCGTGCCGTCTCGAAGATGCCCCAGGACGCGGCCTACCGACGCTACACCGAGCAGATCGTATCCGAGCGTGCCAAGGTGGTCGCCACGACTCCGAATGTGCGTGAAATCGAGCAAAAGATCAACTGTGGCCAGGTGGAGGAGCTGATCGTGCAGGCAGAAAACGAGCTGACGCTCGCGCGCAAGATGCTCGGCTGGAAACCCTGGGAACCGCTGGCCAAGCAGGCACCGGCCAGCCAGTGGGCCTGGCCACCGGCAAACCTTCCCGAGCTGAAGTAAATCTCGCCCCCGGGAGAGTTCATTCGTCCCTTTTCCACCACACCAATATTCTTCTCACAGAGACACACACTTGTAGGCAATGCAAAATCGGTTGTTTAGGG]

[+] EMBL BM610401             [CCGCCCACGCGTCCGCCCACGCGTCCGCGCAAAGCTTCCGCAATGGCCGGCGTTATCAAGAAGGCTACCGGATTGACCGGATTGCACGGGGCCAAGAATCCGCACCACACGTTGACGGCGCTGTACAACAAGATCCTGCGTGCCGTCTCGAAGATGCCCCAGGACGCGGCCTACCGACGCTACACCGAGCAGATCGTATCCGAGCGTGCCAAGGTGGTCGCCACGACTCCGAATGTGCGTGAAATCGAGCAAAAGATCAACTGTGGCCAGGTGGAGGAGCTGATCGTGCAGGCAGAAAACGAGCTGACGCTCGCGCGCAAGATGCTCGGCTGGAAACCCTGGGAACCGCTGGCCAAGCAGGCACCGGCCAGCCAGTGGGCCTGGCCACCGGCAAACCTTCCCGAGCTGAAGTAAATCTCGCCCCCGGGAGAGTTCATTCGTCCCTTTTCCACCACACCAATATTCTTCTCACAGAGACACACACTTGTAGGCAATGCAAAATCGGTTGTTTAGGG]


>consensus_9065#4 CCGCCCACGCGTCCGCCCACGCGTCCGCGCAAAGCTTCCGCAATGGCCGGCGTTATCAAG AAGGCTACCGGATTGACCGGATTGCACGGGGCCAAGAATCCGCACCACACGTTGACGGCG CTGTACAACAAGATCCTGCGTGCCGTCTCGAAGATGCCCCAGGACGCGGCCTACCGACGC TACACCGAGCAGATCGTATCCGAGCGTGCCAAGGTGGTCGCCACGACTCCGAATGTGCGT GAAATCGAGCAAAAGATCAACTGTGGCCAGGTGGAGGAGCTGATCGTGCAGGCAGAAAAC GAGCTGACGCTCGCGCGCAAGATGCTCGGCTGGAAACCCTGGGAACCGCTGGCCAAGCAG GCACCGGCCAGCCAGTGGGCCTGGCCACCGGCAAACCTTCCCGAGCTGAAGTAAATCTCG CCCCCGGGAGAGTTCATTCGTCCCTTTTCCACCACACCAATATTCTTCTCACAGAGACAC ACACTTGTAGGCAATGCAAAATCGGTTGTTTAGGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9065#2      -------------GAGGTACGTTTGTCGCGTGAGGAA--AAAGAAATATATTTCCCAGTC 45
consensus_9065#3      ----------------GCAAGAAT-TCCCACGAGNTT--AAAATATTAT-TTTCCCAGTC 40
consensus_9065#1      ----------------------CTGTTG-GCCTACTG--ATAATATTAT-TTTCCCAGTC 34
consensus_9065#4      ------------------------------------------------------CCGCCC 6
consensus_9065#0      CAGATCCCCACGAGGGTTTTATTCACAAAATTCGCCTCCACACTGTTATTAACGTTTGTT 60
                                                                                  

consensus_9065#2      TCGAGCACTCTCGC-CACTTACGCAAAGCTTCCGCAATGGCCGGCGTTATCAAGAAGGCT 104
consensus_9065#3      TCGAGCACTCTCGC-CACTTACGCAAAGCTTCCGCAATGGCCGGCGTTATCAAGAAGGCT 99
consensus_9065#1      TCGAGGGCTCTCGC-AACTTACACAAAGCTTCCGCAATGGCCGGCGTTATCAAGAAGGCT 93
consensus_9065#4      ACGCGTCCGCCCACGCGTCCGCGCAAAGCTTCCGCAATGGCCGGCGTTATCAAGAAGGCT 66
consensus_9065#0      TTTCCACTTTTAGC-CACTTACGCAAAGCTTCCGCAATGGCCGGCGTTATCAAGAAGGCT 119
                                   *       * *************************************

consensus_9065#2      ACCGGATTGACCGGATTGCACGTGGCCAAGAATCCGCACCACACGCTAACGGCGCTGTAC 164
consensus_9065#3      ACCGGATTGACCGGATTGCACGTGGCCAAGAATCCGCACCACACGCTAACGGCGCTGTAC 159
consensus_9065#1      ACCGGATTGACCGGATTGCACGTGGCCAAGAATCCGCACCACACGCTAACGGCGCTGTAC 153
consensus_9065#4      ACCGGATTGACCGGATTGCACGGGGCCAAGAATCCGCACCACACGTTGACGGCGCTGTAC 126
consensus_9065#0      ACCGGATTGACCGGATTGCACGTGGCCAAGAATCCGCACCACACGCTAACGGCGCTGTAC 179
                      ********************** ********************** * ************

consensus_9065#2      AACAAGATCCTGCGTGCCGTCTCGAAGATGCCCCAGGATGCGGCCTACCGACGCTACACC 224
consensus_9065#3      AACAAGATCCTGCGTGCCGTCTCGAAGATGCCCCAGGATGCGGCCTACCGACGCTACACC 219
consensus_9065#1      AACAAGATCCTGCGTGCCGTCTCGAAGATGCCCCAGGATGCGGCCTACCGACGCTACACC 213
consensus_9065#4      AACAAGATCCTGCGTGCCGTCTCGAAGATGCCCCAGGACGCGGCCTACCGACGCTACACC 186
consensus_9065#0      AACAAGATCCTGCGTGCCGTCTCGAAGATGCCCCAGGATGCGGCCTACCGACGCTACACC 239
                      ************************************** *********************

consensus_9065#2      GAGCAGATCGTATCCGAGCGTGCCAAGGTGGTCGCCACGACTCCGAATGTGCGTGAAATC 284
consensus_9065#3      GAGCAGATCGTATCCGAGCGTGCCAAGGTGGTCGCCACGACTCCGAATGTGCGTGAAATC 279
consensus_9065#1      GAGCAGATCGTATCCGAGCGTGCCAAGGTGGTCGCCACGACTCCGAATGTGCGTGAAATC 273
consensus_9065#4      GAGCAGATCGTATCCGAGCGTGCCAAGGTGGTCGCCACGACTCCGAATGTGCGTGAAATC 246
consensus_9065#0      GAGCAGATCGTATCCGAGCGTGCCAAGGTGGTCGCCACGACTCCGAATGTGCGTGAAATC 299
                      ************************************************************

consensus_9065#2      GAGCAAAAGATCAACTGTGGCCAGGTGGAGGAGCTGATCGTGCAGGCAGAA-AACGAGCT 343
consensus_9065#3      GAGCAAAAGATCAACTGTGGCCAGGTGGAGGAGCTGATCGTGCAGGCAGAA-AACGAGCT 338
consensus_9065#1      GAGCAAAAGATCAACTGTGGCCAGGTGGAGGAGCTGATCGTGCAGGCAGAACAAAGAGCT 333
consensus_9065#4      GAGCAAAAGATCAACTGTGGCCAGGTGGAGGAGCTGATCGTGCAGGCAGAA-AACGAGCT 305
consensus_9065#0      GAGCAAAAGATCAACTGTGGCCAGGTGGAGGAGCTGATCGTGCAGGCAGAA-AACGAGCT 358
                      *************************************************** ** *****

consensus_9065#2      GACGCTCGCGCGCAAGATGCTCGGCTGGAAACCCTGGGAACCGCTGGCCAAGCAGGCACC 403
consensus_9065#3      GACGCTCGCGCGCAAGATGCTCGGCTGGAAACCCTGGGAACCGCTGGCCAAGCAGGCACC 398
consensus_9065#1      GA--GTCGCGCGCAAGATGCTCGGCTGGAAACCCTGGGAACCGCTGGCCAAGCAGGCACC 391
consensus_9065#4      GACGCTCGCGCGCAAGATGCTCGGCTGGAAACCCTGGGAACCGCTGGCCAAGCAGGCACC 365
consensus_9065#0      GACGCTCGCGCGCAAGATGCTCGGCTGGAAACCCTGGGAACCGCTGGCCAAGCAGGCACC 418
                      **   *******************************************************

consensus_9065#2      GGCCAGCCAGTGGGCCTGGCCACCGGCGAACCTGCCCGAGCTGAAGTAAATCTCGCCCCC 463
consensus_9065#3      GGCCAGCCAGTGGGCCTGGC-ACCGGCGAACCTGCCCGAGCTGAAGTAAATCTCGCCCC- 456
consensus_9065#1      GGCCAGCCAGTGGGCCTGGCCACCGGCGAACCTGCCCGAGCTGAAGTAAATCTCGCCCC- 450
consensus_9065#4      GGCCAGCCAGTGGGCCTGGCCACCGGCAAACCTTCCCGAGCTGAAGTAAATCTCGCCCCC 425
consensus_9065#0      GGCCAGCCAGTGGGCCTGGCCACCGGCGAACCTGCCCGAGCTGAAGTAAATCTCGCCCC- 477
                      ******************** ****** ***** ************************* 

consensus_9065#2      GGGAGAGTTCATTCGTCCCTTTTC-CACCACACCAATATTCTTCTC-ACAGAGACACACA 521
consensus_9065#3      GCGGGTGTTCTTTTGTCCCTTTTCACACCAAACCAATATTCTTCTC-ACAGAGACACACA 515
consensus_9065#1      GCGGGTGTTCTTTTGTCCCTTTTCACACCACACCAATATTCTTCTCGACAGAGACACACA 510
consensus_9065#4      GGGAGAGTTCATTCGTCCCTTTTC-CACCACACCAATATTCTTCTC-ACAGAGACACACA 483
consensus_9065#0      GCGGGTGTTCTTTTGTCCCTTTTCACACCACACCAATATTCTTCTC-ACAGAGACACACA 536
                      * * * **** ** ********** ***** *************** *************

consensus_9065#2      CTTGTAGGCAATGCAAAATCGGTTGTTTAGGGTCGTATATGGCG-TGTAAATAAAAAAAA 580
consensus_9065#3      CTTGTAGGCAATGCAAAATCGGTTGTATAGGGTCGCGTATGGCGGTGTAAAAACAACAAA 575
consensus_9065#1      CTTGTAGGCAATGCAAAATCGGTTGTTTAGGGTCGCGTATGGCG-TGTAAATAAAAAAAA 569
consensus_9065#4      CTTGTAGGCAATGCAAAATCGGTTGTTTAGGG---------------------------- 515
consensus_9065#0      CTTGTAGGCAATGCAAAATCGGTTGTTTAGGGTCGCGTATGGCG-TGTAAATA-AAAAAA 594
                      ************************** *****                            

consensus_9065#2      AAAT------ACAACAAAGGCCACATGTGCTCGAGCTGCCGGGGCCC------------- 621
consensus_9065#3      ACAA------ACAAACAAGG---------------------------------------- 589
consensus_9065#1      ACAACAACAGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGACCT 629
consensus_9065#4      ------------------------------------------------------------
consensus_9065#0      ACAACAACAGGCAACAACACGTGCGGCCATANAGGAACACGGTGAAAACAAGACACAACN 654
                                                                                  

consensus_9065#2      ------------------------------------------------------------
consensus_9065#3      ------------------------------------------------------------
consensus_9065#1      TTT--------------------------------------------------------- 632
consensus_9065#4      ------------------------------------------------------------
consensus_9065#0      CNCACAACAAAGTGCGAACGACAGCACGAACGAAACCAGGCATTGTTGCGGACCGCAAAG 714
                                                                                  

consensus_9065#2      ------------------------------------------------------------
consensus_9065#3      ------------------------------------------------------------
consensus_9065#1      ------------------------------------------------------------
consensus_9065#4      ------------------------------------------------------------
consensus_9065#0      GCTTTATTCCCCTTTTAAGTNACGGGGTAAACTTTTTCAGCCTTGGGCAACTTGGCCCCG 774
                                                                                  

consensus_9065#2      -----------------------
consensus_9065#3      -----------------------
consensus_9065#1      -----------------------
consensus_9065#4      -----------------------
consensus_9065#0      TCCGGTTTTTACAAACCGTCGTT 797
                                             




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)