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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9075#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1045 fasta sequence
[AGAGAGAGAGAGATAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGATATTTTCTAGCGAGAGATGCGTTCGTACAAAGGAAGACAGGTTATTCTTCCCCTTTCGCAGCTAGTAGTAAGGTGGATGAAGGTTTAGTTTTAAAGCAAACAACCCAAAAGCAAAAGCACCCACACACACGCGCGCTCGCGGTGAATGTACACGTACCCTAGTAAAATAGGCAGCGAATCTCTTGGCCAGAAATATCCGGATGTTGGAGAATATTTGGACAAAAAAAAAGGACATCAAATGGTGAAAGAACAGACCCCGTAAAACGCGTTCTTTTGCTGCGCGCGTGTGTGTGTGTGTTTTGAGTGAGTTTTTGGTTTGTGCCTATTCTTGCCCGTTACAATTTCAACCACCTGCATTGATTGAATGGTGAATGGTGAATGGT-GGGGATGGAGGGAAATCCGGAAGTACGACATTAACACAAAGAAATAATACTAGTACACAGG-AACGTTTCGGTGGTTGCTACTCTTTCGTTTTACTATATACAGGCAAGGGCAGACAAGCGTTTAGCGTATAATAC-----AACAAAACAAGCAATAAGAACGCCGTCATGCAGCAAACAACAAAAAAAAAGAAGC-----AACCGGCTGTTCATGCTCAATTCATTCGCTCGTTCTGGTGCTTGCGCCTTCTACACTACGCTCCTTCTCAAACATATCTCCTTCAGGGCCGTTGTCCAGAGTGTCCATCTTTAGGGTTTTAGTTGCA-------TTTTTTTTTACAAATCAAACTGGTCG-TTTCTGCGCGGTTTTCCCCGGGCTTCCGGGTACGTACGTGGAAGCTCGGAAGCGGAGAAGGAGATTCAACCCACTATCCCTTCCCATCGCAGAGATAGCCACAAAATAGCCAACAAACAAAAAATGCAACAACAAAAAAGCGTTAGGCTAATTATACGCCGTTACAAACCACAACAGTAAAACAATGTAATAAAGAGTTTGTTGAAACGTTAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL BM646945 [AGAGAGAGAGAGATAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGATATTTTCTAGCGAGAGATGCGTTCGTACAAAGGAAGACAGGTTATTCTTCCCCTTTCGCAGCTAGTAGTAAGGTGGATGAAGGTTTAGTTTTAAAGCAAACAACCCAGAAGCAAAAGCACCCACACACACGCGCGCTCGCGGTGAATGTACACGTACCCTAGTAAAATAGGCAGCGAATCTCTTGGCCAGAAATATCCGGATGTTGGAGAATATTTGGACAAAAAAAAAGGACATCAAATGGTGAAAGAACAGACCCCGTAAAACGCGTTCTTTTGCTGCGCGCGTGTGTGTGTGTGT ]
[+] EMBL BX628240 [ TTCGCAGCTAGTAGTAAGGTGGATGAAGGTTTAGTTTTAAAGCAAACAACCCAAAAGCAAAAGCACCCACACACACGCGCGCTCGCGGTGAATGTACACGTACCCTAGTAAAATAGGCAGCGAATCTCTTGGCCAGAAATATCCGGATGTTGGAGAATATTTGGACAAAAAAAAAGGACATCAAATGGTGAAAGAACAGACCCCGTAAAACGCGTTCTTTTGCTGCGCGCGTGTGTGTGTGTGTTTTGAGTGAGTTTTTGGTTTGTGCCTATTCTTGCCCGTTACAATTTCAACCACCTGCATTGATTGAATGGTGAATGGTGATGGGT GGGGATGGAGGGAAATCCGGAAGTACGACATTAACACAAAGAAATAATACTAGTACACAGG AACGTTTCGGTGGTTGCTACTCTTTCGTTTTACTA ]
[+] EMBL BX622901 [ AAGGTGGATGAAGGTTTAGTTTTAAAGCAAACAACCCAAAAGCAAAAGCACCCACACACACGCGCGCTCGCGGTGAATGTACACGTACCCTAGTAAAATAGGCAGCGAATCTCTTGGCCAGAAATATCCGGATGTTGGAGAATATTTGGACAAAAAAAAAGGACATCAAATGGTGAAAGAACAGACCCCGTAAAACGCGTTCTTTTGCTGCGCGCGTGTGTGTGTGTGTTTTGAGTGAGTTTTTGGTTTGTGCCTATTCTTGCCCGTTACAATTTCAACCACCTGCATTGATTGAATGGTGAATGGTGAATGGT GGGGATGGAGGGAAATCCGGAAGTACGACATTAACACAAAGAAATAATACTAGTACACAGG AACGTTTCGGTGGTTGCTACTCTTTCGTTTTACTATATACAGGCAAGGGCAGACAAG ]
[+] EMBL BX609409 [ AGGTGGATGAAGGTTTAGTTTTAAAGCAAACAACCCAAAAGCAAAAGCACCCACACACACGCGCGCTCGCGGTGAATGTACACGTACCCTAGTAAAATAGGCAGCGAATCTCTTGGCCAGAAATATCCGGATGTTGGAGAATATTTGGACAAAAAAAAAGGACATCAAATGGTGAAAGAACAGACCCCGTAAAACGCGTTCTTTTGCTGCGCGCGTGTGTGTGTGTGTTTTGAGTGAGTTTTTGGTTTGTGCCTATTCTTGCCCGTTACAATTTCAACCACCTGCATTGATTGAATGGTGAATGGTGAATGGT GGGGATGGAGGGAAATCCGGAAGTACGACATTAACACAAAGAAATAATACTAGTACACAGG AACGTTTCGGTGGTTGCTACTCTTTCGTTTTACTATATACAGGCAAGGGCAGACAAGCGTTTAGCGTATAATAC AACAAAACAAGCAATAAGAACGCCGTCATGCAGCAAACAACAAAAAAAAAGAAGC AACCGGCTGTTCATGCTCAATTCATTCGCTCGTTCTGGTGCTTGCGCCTTCTACACTACGCTCCTTCTCAAACATATCTCCTTCAGGGCCGTTGTCCAGAGTGTCCATCTTTAGGGTTTTAGTTGCA TTTTTTTTTACAAA ]
[+] EMBL BX625916 [ AGCAAACAACCCAAAAGCAAAAGCACCCACACACACGCGCGCTCGCGGTGAATGTACACGTACCCTAGTAAAATAGGCAGCGAATCTCTTGGCCAGAAATATCCGGATGTTGGAGAATATTTGGACAAAAAAAAAGGACATCAAATGGTGAAAGAACAGACCCCGTAAAACGCGTTCTTTTGCTGCGCGCGTGTGTGTGTGTGTTTTGAGTGAGTTTTTGGTTTGTGCCTATTCTTGCCCGTTACAATTTCAACCACCTGCATTGATTGAATGGTGAATGGTGAATGGT GGGGATGGAGGGAAATCCGGAAGTACGACATTAACACAAAGAAATAATACTAGTACACAGG AACGTTTCGGTGGTTGCTACTCTTTCGTTTTACTATATACAGGCAAGGGCAGACAAGCGTTTAGCGTATAATAC AACAAAACAAGCAATAAGAACGCCGTCATGCAGCAAACAACAAAAAAAAAGAAGC AACCGGCTGTTCATGCTCAATTCATTCGCTCGTTCTGGTGCTTGCGCCTTCTACACTACGCTCCTTCTCAAACATATCTCCTTCAGGGCCGTTGTCCAGAGTGTCCATCTTTAGGGTTTTAGTTGCA TTTTTTTTTACAAATCAAACTGGTCG TTTCTGCGCGGTTTTCCCCGGGCTTCCGGGTACGTACGTGGAAGCTCGGAAGCGGAGAANGAGATTCAACCCACTATCCCTTCCCATCGCAGAGATAGCCA ]
[+] EMBL BX622400 [ AAAATAGGCAGCGAATCTCTTGGCCAGAAATATCCGGATGTTGGAGAATATTTGGACAAAAAAAAAGGACATCAAATGGTGAAAGAACAGACCCCGTAAAACGCGTTCTTTTGCTGCGCGCGTGTGTGTGTGTGTTTTGAGTGAGTTTTTGGTTTGTGCCTATTCTTGCCCGTTACAATTTCAACCACCTGCATTGATTGAATGGTGAATGGTGAATGGT GGGGATGGAGGGAAATCCGGAAGTACGACATTAACACAAAGAAATAATACTAGTACACAGG AACGTTTCGGTGGTTGCTACTCTTTCGTTTTACTATATACAGGCAAGGGCAGACAAGCGTTTAGCGTATAATAC AACAAAACAAGCAATAAGAACGCCGTCATGCAGCAAACAACAAAAAAAAAGAAGC AACCGGCTGTTCATGCTCAATTCATTCGCTCGTTCTGGTGCTTGCGCCTTCTACACTACGCTCCTTCTCAAACATATCTCCTTCAGGGCCGTTGTCCAGAGTGTCCATCTTTAGGGTTTTAGTTGCA TTTTTTTTTACAAATCAAACTGGTCG TTTCTGCGCGGTTTTCCCCGGGCTTCCGGGTACGTACGTGGAAGCTCGGAAGCGGAGAANGAGATTCAACCCACTA ]
[+] EMBL BM652623 [ AGGACATCAAATGGTGAAAGAACAGACCCCGTAAAACGCGTTCTTTTGCTGCGCGCGTGTGTGTGTGTGTTTTGAGTGAGTTTTTGGTTTGTGCCTATTCTTGCCCGTTACAATTTCAACCACCTGCATTGATTGAATGGTGAATGGTGATTGGTGGGGGATGGAGGGAAATCCGGAAGTACGACATTAACACAAAGAAATAATACTAGTACACAGGCAACGTTTCGGTGGTTGCTACTCTTTCGTTTTACTATATACAGGCAAGGGCAGACAAGCGTTTAGCGTATAATAC AACAAAACAAGCAATAAGAACGCCGTCATGCAGCAAACAACAAAAAAAAAGAAGC AACCGGCTGTTCATGCTCAATTCATTCGCTCGTTCTGGTGCTTGCGCCTTCTACACTACGCTCCTTCTCAAACATATCTCCTTCAGGGCCGTTGTCCAGAGTGTCCATCTTTAGGGTTTTAGTTGCA TTTTTTTTTACAAATCAAACTGGTCGTTTTCTGCGCGGTTTTCCCCGGGCTTCCGGGTACGTACGTGGAAGCTCGGAAGCGGAGAAGGAGATTCAACCCACTATCCCTTCCCATCGCAGAGATAGCCACAAAATAGCCAACAAACAAAAAATGCAACAACAAAAAAGCGTTAGGCTAAT ]
[+] EMBL BX612380 [ CTATTCTTGCCCGTTACAATTTCAACCACCTGCATTGATTGAATGGTGAATGGTGAATGGT GGGGATGGAGGGAAATCCGGAAGTACGACATTAACACAAAGAAATAATACTAGTACACAGG AACGTTTCGGGGGTTGCTACTCTTTCGTTTTACTATATAC ]
[+] EMBL AGA283059 [ ACATTAACACAAAGAAATAATACTAGTACACAGG AACGTTTCGGTGGTTGCTACTCTTTCGTTTTACTATATACAGGCAAGGGCAGACAAGCGTTTAGCGTATAATAC AACAAAACAAGC ]
[+] EMBL BM649507 [ ccgGGCAAGGGCAGACAAGCGTTTAGCGTATAATACAACAAAACAAAACAAGCAATAAGAACGCCGTCATGCAGCAAACAAAAAAAAAGAAGCAACATAAAAACCGGCTGTTCATGCTCAATTCATTCGCTCGTTCTGGTGCTTGCGCCTTCTACACTACGCTCCTTCTCAAACATATCTCCTTCAGGGCCGTTGTCCAGAGTGTCCATCTTTAGGGTTTTAGTTGCATTTTTTTTTTTTTTTTACAAATCAAACTGATCG TTTCTGCGCGGTTTTCCCCGGGCTTCCGGGTACGTACGTGGAAGCTCGGAAGCGGAGAAGGAGATTCAACCCACTATCCCTTCCCAT CAGAGATAGCCACAAAATAGCCAACAAACAAAAAATGCAACAACAAAAAAGCGTTAGGCTAATTATATGCCGTTACAAACCACAACAGTAAAACAATGTAAT ]
[-] EMBL AGA281454 [ CAAGCAATAAGAACGCCGTCATGCAGCAAACAACAAAAAAAAAGAAGC AACCGGCTGTTCATGCTCAATTCATTCGCTCGTTCTGGTGCTTGCGCCTTCTACACTACGCTCCTTCTCAAACATATCTCCTTCAGGGCCGTTGTCCAGAGTGTCCATCTTTAGGGTTTTAGTTGCA TTTTTTTTTACAAATCAAACTGGTCG TTTCTGCGCGGTTTTCCCCGGGCTTCCGGGTACGTACGTGGAAGCTCGGAAGCGGAGAAGGAGATTCAACCCACTATCCCTTCCCATCGCAGAGATAGCCACAAAATAGCCAACAAACAAAAAATGCAACAACAAAAAAGCGTTAGGCTAATTATACGCCGTTACAAACCACAACAGTAAAACAATGTAATAAAGAGTTTGTTGAAACGTTAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL BX629241 [ GTGCTTGCGCCTTCTACACTACGCTCCTTCTCAAACATATCTCCTTCAGGGCCGTTGTCCAGAGTGTCCATCTTTAGGGTTTTAGTTGCA TTTTTTTTTACAAATCAAACTGGTCG TTTCTGCGCGGATTTCCCCGGGCTTCCGGGTACGTACGTGGAAGCTCGGAAGCGGAGAAGGAGATTCAACCCACTATCCCTTCCCATCGCAGAGATAGCCACAAAATAGCCAACAAACAAAAAATGCAACAACAAAAAAGCGTTAGGCTAATTATACGCCGTTACAAACCACAACAGTAAAACAATGTAATAAAGAGTTTGTTG ]
[+] EMBL BX629132 [ TGCTTGCGCCTTCTACACTACGCTCCTTCTCAAACATATCTCCTTCAGGGCCGTTGTCCAGAGTGTCCATCTTTAGGGTTTTAGTTGCA TTTTTTTTTACAAATCAAACTGGTCG TTTCTGCGCGGATTTCCCCGGGCTTCCGGGTACGTACGTGGAAGCTCGGAAGCGGAGAAGGAGATTCAACCCACTATCCCTTCCCATCGCAGAGATAGCCACAAAATAGCCAACAAACAAAAAATGCAACAACAAAAAAGCGTTAGGCTAATTATACGCCGTTACAAACCACAACAGTAAAACAATGTAATAAAGAGTTTGTTG ]
consensusID : consensus_9075#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 447 fasta sequence
[GGGCAGAATTGCGCCCGAGTTTAATGTAGCTGTTAACTCGCGTACGTTACAGGGAGCTTAAGTAACATGTTTAAAATATATATATAAATACTAGACAGAGATAGAGAGAGAGAAACAAGAGAGAGAGAGAGAGAGAGATAGAGAGATTTTCTAGCGAGAGATGCGTTCGTACAAAGGAAGACAGGTTATTCTTCCCCTTTCGCAGCTAGTAGTAAGGTGGATGANGGATTAGTTTTAAAGCAAACAATCCAAAAGCAAAAGCACCCAAAAACGCGCGCTCGCGGTGAATGTACACGTTACCCTAAGTAAAATAGGCAGCGAATCTCTTGGCAGAAATATCCGGATGTTGGAGAATATTTGGACGAAAAAAATGGACAAACAAAATGGGTGAACAGAAACAGACCCCCGTAAAACCTGCGTTCTTTTTGCTGCGCGCGTGTGTGTGTG]
[+] EMBL AL693585 [GGGCAGAATTGCGCCCGAGTTTAATGTAGCTGTTAACTCGCGTACGTTACAGGGAGCTTAAGTAACATGTTTAAAATATATATATAAATACTAGACAGAGATAGAGAGAGAGAAACAAGAGAGAGAGAGAGAGAGAGATAGAGAGATTTTCTAGCGAGAGATGCGTTCGTACAAAGGAAGACAGGTTATTCTTCCCCTTTCGCAGCTAGTAGTAAGGTGGATGANGGATTAGTTTTAAAGCAAACAATCCAAAAGCAAAAGCACCCAAAAACGCGCGCTCGCGGTGAATGTACACGTTACCCTAAGTAAAATAGGCAGCGAATCTCTTGGCAGAAATATCCGGATGTTGGAGAATATTTGGACGAAAAAAATGGACAAACAAAATGGGTGAACAGAAACAGACCCCCGTAAAACCTGCGTTCTTTTTGCTGCGCGCGTGTGTGTGTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9075#0 ---------------------------------------------------------AGA 3
consensus_9075#1 GGGCAGAATTGCGCCCGAGTTTAATGTAGCTGTTAACTCGCGTACGTTACAGGGAGCTTA 60
*
consensus_9075#0 GAGAGAGAGATAGAGAGAGAGAGAGAAAGAG-AGAGAGAGAGAGAGAGAGAGAGA-GAGA 61
consensus_9075#1 AGTAACATGTTTAAAATATATATATAAATACTAGACAGAGATAGAGAGAGAGAAACAAGA 120
* * * * * * * * * *** * *** ***** *********** * ***
consensus_9075#0 AAGAGAGAGAGAGAGAGAGAGAGATATTTTCTAGCGAGAGATGCGTTCGTACAAAGGAAG 121
consensus_9075#1 GAGAGAGAGAGAGAGAGATAGAGAGATTTTCTAGCGAGAGATGCGTTCGTACAAAGGAAG 180
***************** ***** ***********************************
consensus_9075#0 ACAGGTTATTCTTCCCCTTTCGCAGCTAGTAGTAAGGTGGATGAAGGTTTAGTTTTAAAG 181
consensus_9075#1 ACAGGTTATTCTTCCCCTTTCGCAGCTAGTAGTAAGGTGGATGANGGATTAGTTTTAAAG 240
******************************************** ** ************
consensus_9075#0 CAAACAACCCAAAAGCAAAAGCACCCACACACACGCGCGCTCGCGGTGAATGTACACGT- 240
consensus_9075#1 CAAACAATCCAAAAGCAAAAGCACCCAAAAAC--GCGCGCTCGCGGTGAATGTACACGTT 298
******* ******************* * ** *************************
consensus_9075#0 ACCCTA-GTAAAATAGGCAGCGAATCTCTTGGCCAGAAATATCCGGATGTTGGAGAATAT 299
consensus_9075#1 ACCCTAAGTAAAATAGGCAGCGAATCTCTTGGC-AGAAATATCCGGATGTTGGAGAATAT 357
****** ************************** **************************
consensus_9075#0 TTGGACAAAAAAAAAGGACA--TCAAATGG-TGAA--AGAACAGACCCC-GTAAAAC--G 351
consensus_9075#1 TTGGACGAAAAAAATGGACAAACAAAATGGGTGAACAGAAACAGACCCCCGTAAAACCTG 417
****** ******* ***** ****** **** ********** ******* *
consensus_9075#0 CGTTCTTTT-GCTGCGCGCGTGTGTGTGTGTGTTTTGAGTGAGTTTTTGGTTTGTGCCTA 410
consensus_9075#1 CGTTCTTTTTGCTGCGCGCGTGTGTGTGTG------------------------------ 447
********* ********************
consensus_9075#0 TTCTTGCCCGTTACAATTTCAACCACCTGCATTGATTGAATGGTGAATGGTGAATGGTGG 470
consensus_9075#1 ------------------------------------------------------------
consensus_9075#0 GGATGGAGGGAAATCCGGAAGTACGACATTAACACAAAGAAATAATACTAGTACACAGGA 530
consensus_9075#1 ------------------------------------------------------------
consensus_9075#0 ACGTTTCGGTGGTTGCTACTCTTTCGTTTTACTATATACAGGCAAGGGCAGACAAGCGTT 590
consensus_9075#1 ------------------------------------------------------------
consensus_9075#0 TAGCGTATAATACAACAAAACAAGCAATAAGAACGCCGTCATGCAGCAAACAACAAAAAA 650
consensus_9075#1 ------------------------------------------------------------
consensus_9075#0 AAAGAAGCAACCGGCTGTTCATGCTCAATTCATTCGCTCGTTCTGGTGCTTGCGCCTTCT 710
consensus_9075#1 ------------------------------------------------------------
consensus_9075#0 ACACTACGCTCCTTCTCAAACATATCTCCTTCAGGGCCGTTGTCCAGAGTGTCCATCTTT 770
consensus_9075#1 ------------------------------------------------------------
consensus_9075#0 AGGGTTTTAGTTGCATTTTTTTTTACAAATCAAACTGGTCGTTTCTGCGCGGTTTTCCCC 830
consensus_9075#1 ------------------------------------------------------------
consensus_9075#0 GGGCTTCCGGGTACGTACGTGGAAGCTCGGAAGCGGAGAAGGAGATTCAACCCACTATCC 890
consensus_9075#1 ------------------------------------------------------------
consensus_9075#0 CTTCCCATCGCAGAGATAGCCACAAAATAGCCAACAAACAAAAAATGCAACAACAAAAAA 950
consensus_9075#1 ------------------------------------------------------------
consensus_9075#0 GCGTTAGGCTAATTATACGCCGTTACAAACCACAACAGTAAAACAATGTAATAAAGAGTT 1010
consensus_9075#1 ------------------------------------------------------------
consensus_9075#0 TGTTGAAACGTTAAAAAAAAAAAAAAAAAAAAAAA 1045
consensus_9075#1 -----------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||