Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 9086 cluster # 9086       Sequences # 14       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9086#0 length = 1773 sequences # 11  
consensus_9086#1 length = 720 sequences # 2  
consensus_9086#2 length = 341 sequences # 1  

consensusID : consensus_9086#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 1773
fasta sequence
                              [CACCTCACAGGTTTCGCAATGCGATTTTTTGATGCGCACATTGTAGAGATGGCTAAAAAAAGGGCGGGCTGTTCACACGGGTCACGTTTCCCCACGCATGGCAAACCGGCAAGAAAGTAGAGGAAAAGTTTGGATTTTGATATTATCCTTCGGCCCATTGGCCATTGGGGGGCCATTGTTTCTCTGGCATGGTGGTGAATAAGTAACTCTGTACGATTTCCATTTCCCCCCCTCTTTGTACGTTTCCTGTTTGGAGATTTTCTTACACACAGGGGGGAGGGCAGCCCCATGCGCTCGTTGAACAAAACTGATCGAGATGCGAGGCGAAACAGACTGAGAATAATGCTGCAAAAAAGGGGTAGCTAATTGCGCCACTATTCGATACGATTTGTGTTACTATTATCATGTTTCCATCATGTTTGTTTG-AAAAAAAAACGCCTGCTTTCCCTTTAGGGGTGTTAATGTGTAATTTATGTAAAAAAAACACGAAAACATCCTACAAGTGTACTACAAGCTTTATTACTTCAAATGCTTTTATCAATATGTAATAGTTTTAGACGCGTGTCAGTAGAGAGGTGTATACTTTATTTAAGCTTTCATTTTTGCATCTTCTTTTTAATGATCTGTTGTTTTTATTTGTATTAAAACATGAGCAGGTATCAGAAAAGGGTCTATTTTGAGGTACTATAACGTTATAACGTACTATTATTTTTTCCCCNAATTGNTTTGTGTAGCATTTGTACTGCTTCGTTTTCAGTTGTACATTTGGAGCAAACAGCAAACGAACAAAA-AAAAAACGAGCTATTTCAAAATTTTATTGCATTATGATTTAGTTGGATGAGAGACCCCTGTGATGAAGAAAATTAACAACATGGAAACTGTTATTCATTTCGGTTAGTTTTACATACTTTGGCAAGCAA--AGAGAGAGA--CGGAAGGGAGCAAAATAGCTTTTCTAGCTTCTCAAGATTTGGCTTTCATGTACGAAACGGG-TTTTTTATATGTTTCACGCGTGAAATTTGCTTTCTTCAGTCCCACCAACCACCCTAAACGAAATGAGAAAAAGTGTCTAATGTGTGAGCGTTTCCCACAAACAATTGCAGCTAAAGTGCAGCTCTAATACACACACACACACAGCACTCTGATTGAAAGTGCTTGCAGAACTGTGCAGAAGATTATAATAAGTAAAGTAATCGAAACAGCAGGCAGCCGCCGCCCGGGGGCAAAAGCAGAGAGAAACTGAGCGTGTGCCGCACAAAACAAAACATATTAGCGGCGAGATCA-GGTTAAATCGGCGTTACTGGACAAAAGGAGGAAGA-AGAAGA-AGA-AA-A---AAAAACATTTGTGTGATAATATATAATAGTAATATGTTGTAATGTTTAATTTATAACAATAATCCCTCTATCCCTTTAGTGGTGACAACAAAATGCGGGCGCCCGCGTGAGGTCGAAGCCTCCTACCTACCTACCTAAACCTACCTAGCATGTACTCTCTCTCTCTCTCTACCTACTTTCCCTGGGTTCTCTGTTGACTACTAATCAAAGTATGCAACGCCCCGAGACCGAACCGCGTGCGGTGTTGCGTATGTAAGGAAAAGCGCAAGCGAGTTGCGCGTACAAAACGCATCTATGTAAAATAGTACAGAAAAAAGTGTGAGAACATAAAAAAAAACGTGCGAACCCCCTTAAGAAGGATGAAATGCAAGAAAGAGAGCGAGAGAGAGAGAGAGAGAGTAATAAAAATAAAAAGAANAAATATACACTAAACAAAGGCAGCATG]

[+] EMBL BX625617             [CACCTCACAGGTTTCGCAATGCGATTTTTTGATGCGCACATTGTAGAGATGGCTAAAAAAAGGGCGGGCTGTTCACACGGGTCACGTTTCCCCACGCATGGCAAACCGGCAAGAAAGTAGAGGAAAAGTTTGGATTTTGATATTATCCTTCGGCCCATTGGCCATTGGGGGGCCATTGTTTCTCTGGCATGGTGGTGAATAAGTAACTCTGTACGATTTCCATTTCCCCCCCTCTTTGTACGTTTCCTGTTTGGAGATTTTCTTACACACAGGGGGGAGGGCAGCCCCATGCGCTCGTTGAACAAAACTGATCGAGATGCGAGGCGAAACAGACTGAGAATAATGCTGCAAAAAAGGGGTAGCTAATTGCGCCACTATTCGATACGATTTGTGTTACTATTATCATGTTTCCATCATGTTTGTTTG AAAAAAAAACGCCTGCTTTCCCTTTAGGGGTGTTAATGTGTAATTTATGTAAAAAAAACACGAAAACATCCTACAAGTGTACTACAAGCTTTATTACTTCAAATGCTTTTATCAATATGTAATAGTTTTAGACGCGTGTCAGTAGAGAGGTGTATACTTTATTTAAGCTTTCATTTTTGCATCTTCTTTTTAATGATCTGTTGTTTTTATTTGTATTAAAACATGAGCAGGTATCAGAAAAGGGTCTATTTTGAGGTACTATAACGTTATAACGTACTATTATTTTTTCCCCNAATTGNTTTGCGTAGCATTTGTACTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BM654033             [                                                                                                                                                                                                                                                                                                                                                                ccgGGGGTAGCTAATTGCGCCACTATTCGATACGATTTGTGTTACTATTATCATGTTTCC TTGT TTTGTTTGAAAAAAAAAACGCCTGCTTTCCCTTTAGGGGTGTTAATGTGTAATTTATGTAAAAAAAACACGAAAACATCCTACAAGTGTACTACAAGCTTTATTACTTCAAATGCTTTTATCAATATGGAATAGTTTTAGACGCATGTCAGTAGAGAGGTGTATACTTTATTTAAGCTTTCATTTTTGCATCTTCTTTTTAATGATCTGTTGTTTTTATTTGTATTAAAACATGAGCAGGTATCAGAAAAGGGTCTATTTTGAGGTACTATAACGTTATAACGTACTATTATTTTTTCCCCAAATTG TTTTTGTATATTTTGTACTGCTTCGTTTTCAGTTGTACATTTGGAGCAAACAGCAAACGAACAAAA GAAAAACGAGCTATTTCAAAATTTTATTGCATTATGATTTAGTTGGATGAGAGACCCCTGTGATGAAGAAAATTAACAACATGGAAACTGTTATTCATTTCGGTTAGTTTTACATACTTTGGCAAGCAA  AGAGAGAGA  CGGAAGGGAGCAAAATAGCTTTTCTAGCTTCTCAAGATTTGGCTTTCATGTACGAAACGGGTTTTTTTATATGTTTCACGCGTGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BX621434             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TATTTGNATTAAAACATGAGCANGTATCAGAAAAGGGTCTATTTTGAGGNACTATAACGTTATAACG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AL693729             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ttagGCATTTGTACTGCTTCG TTTCAGTTGTACATTTGGAGCAAACAGCAAACGAACAAAACAAAAAACGAGCTATTTCAAAATTTTA TGCATTATGATTTAGTTGGATGAGAGACCC  GTGATGAAGAAAATTAACAACATGGAAACTGTTATTCATTTCGGTTAGTTTTACATACTTTGG AAGCAA  AGAGAGAGAGGCGGAAGGGAGCAAAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BX610820             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         AGCAAACGAACAAAACAAAAAACGAGCTATTTCAAAATTTTATTGCATTATGATTTAGTTGGATGAGAGACCCCTGTGATGAAGAAAATTAACAACATGGAAACTGTTATTCATTTCGGTTAGTTTTACATACTTTGGCAAGCAAAGAGAGAGAGA  CGGAAGGGAGCAAAATAGCTTTTCTAGCTTCTCAAGATTTGGCTTTCATGTACGAAACGGG TTTTTTATATGTTTCACGCGTGAAATTTGCTTTCTTCAGTCCCACCAACCACCCTAAACGAAATGAGAAAAAGTGTCTAATGTGTGAGCGTTTCCCACAAACAATTGCAGCTAAAGTGCAGCTCTAATACACACACACACACAGCACTCTGATTGAAAGTGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BX610821             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ac AAAAAACGAGCTATTTCAAAATTTTATTGCATTATGATTTAGTTGGATGAGAGACCCCTGTGATGAAGAAAATTAACAACATGGAAACTGTTATTCATTTCGGTTAGTTTTACATACTTTGGCAAGCAAAGAGAGAGAGA  CGGAAGGGAGCAAAATAGCTTTTCTAGCTTCTCAAGATTTGGCTTTCATGTACGAAACGGG TTTTTTATATGTTTCACGCGTGAAATTTGCTTTCTTCAGTCCCACCAACCACCCTAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BX615974             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AATTTTATTGCATTATGATTTAGTTGGATGAGAGACCCCTGTGATGAAGAAAATTAACAACATGGAAACTGTTATTCATTTCGGTTAGTTTTACATACTTTGGCAAGCAAAGAGAGAGAGA  CGGAAGGGAGCAAAATAGCTTTTCTAGCTTCTCAAGATTTGGCTTTCATGTACGAAACGGG TTTTTTATATGTTTCACGCGTGAAATTTGCTTTCTTCAGTCCCACCAACCACCCTAAACGAAATGAGAAAAAGTGTCTAATGTGTGAGCGTTTCCCACAAACAATTGCAGCTAAAGTGCAGCTCTAATACACACACACACACAGCACTCTGATTGAAAGTGCTTGCAGAACTGTGCAGAAGATTATAATAAGTAAAGTAATCGAAACAGCAGGCAGCCGCCGCCCTGGGGCAAAAGCAGAGAGAAACTGAGCGTGTGCCGCACAAAACAAAACATATTATCGGCGAGATCA GGTTAAATCGGCGTTACTGGACAAAAGGAGGAAGA AGAAGA AGA AA A   AAAAACATTTGTGTGATAATATATAATAGTAATATGGTGTAATGTTTAATTTATAACAATAATCCCTCTAT                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL BX612523             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GTGAAATTTGCTTTCTTCAGTCCCACCAACCACCCTAAACGAAATGAGAAAAAGTGTCTAATGTGTGAGCGTTTCCCACAAACAATTGCAGCTAAAGTGCAGCTCTAATACACACACACACACAGCACTCTGATTGAAAGTGCTTGCAGAACTGTGCAGAAGATTATAATAAGTAAAGTAATCGAAACAGCAGGCAGCCGCCGCCCGGGGGCAAAAGCAGAGAGAAACTGAGCGTGTGCCGCACAAAACAAAACATATTAGCGGCGAGATCA GGTTAAATCGGCGTTACTGGACAAAAGGAGGAAGA AGAAGA AGA AA A   AAAAACATTTGTGTGATAATATATAATAGTAATATGTTGTAATGTTTAATTTATAACAATAATCCCTCTATCCCTTTAGTGGTGACAACAAAATGCGGGCGCCCGCGTGAGGTCGAAGCCTCCTACCTACCTACCTAAACCTACCTAGCATGTACTCTCTCTCTCTCTCTACCTACTTTCCCTGGGTTCTCTGTTGACTACTAATCAAAGTATGCAACGCCCCGAGACCGAACCGCGTGCGGTGTTGCGTATGTAAGGAAAAGCGCAAGCGAGTTGCGCGTACAAAACGCATCTATGTAAAATAGTACAGAAAAAAGTGTGAGAACATAAAAAAAAACGTGCGAACCCCCTTAAGAAGGATGAAATGCAAGAAAGAGAGCGAGAGAGAGAGAGAGAGAGTAATAAAAATAAAAAGAA                            ]
[+] EMBL BX615994             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GCAGAAGATTATAATAAGTAAAGTAATCGAAACAGCAGGCATCCGCCGCCCGGGGGCAAAAGCAGAGAGAAACTGAGCGTGTGCCGCACAAAACAAAACATATTAGCGGCGAGATCA GGTTAAATCGGCGTTACTGGACAAAAGGAGGAAGA AGAAGA AGA AA A   AAAAACATTTGTGTGATAATATATAATAGTAATATGTTGTAATGTTTAATTTATAACAATAATCCCTCTATCCCTTTAGTGGTGACAACAAAATGCGGGCGCCCGCGTGAGGTCGAAGCCTCCTACCTACCTACCTAAACCTACCTAGCATGTACTCTCTCTCTCTCTCTACCTACTTTCCCTGGGTTCTCTGTTGACTACTAATCAAAGTATGCAACGCCCCGAGACCGAACCGCGTGCGGTGTTGCGTATGTAAGGAAAAGCGCAAGCGAGTTGCGCGTACAAAACGCATCTATGTAAAATAGTACAGAAAAAAGTGTGAGAACATAAAAAAAAACGTGCGAACCCCCTTAAGAAGGATGAAATGCAAGAAAGAGAGCGAGAGAGAGAGAGAGA                                                 ]
[-] EMBL BX466642             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  AGATCACGGTTAAATCGGCGTTACTGGACAAAAGGAGGAAGANAGAAGATAGATAATAGNTAAGAACATTTGTGTGATAATATATAATAGTAATATGTTGTAATGTTTAATTTATAACAATAATCCCTCTATCCCTTTAGTGGTGACAACAAAATGCGGGCGCCCGCGTGAGGTCGAAGCCTCCTACCTACCTACCTAAACCTACCTAGCATGTACTCTCTCTCTCTCTCTACCTACTTTCCCTGGGTTCTCTGTTGACTACTAATCAAAGTATGCAACGCCCCGAGACCGAACCGCGTGCGGTGTTGCGTATGTAAGGAAAAGCGCAAGCGAGTTGCGCGTACAAAACGCATCTATGTAAAATAGTACAGAAAAAAGTGTGAGAACATAAAAAAAAACGTGCGAACCCCCTTAAGAAGGATGAAATGCAAGAAAGAGAGCGAGAGAGAGAGAGAGAGAGTAATAAAAATAAAAAGGGNAAATATACACTAAACAAAGGCAGCATG]
[+] EMBL BX610277             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GAAGA AGAAGA AGA AA A   AAAAACATTGGTGGGATAATATATAATAGTAATATGTTGTAATGTTTAATTTATAACAATAAT CCTCTATCCCTTTAGTGGTGACAACAAAATGCGGGCGCCCGCGTGAGGTCGAAGCCTCCTACCTACCTACCTAAACCTACCTAGCATGTACTCTCTCTCTCTCTCTACCTACTTTCCCTGGGTTCTCTGTTGACTACTAATCAAAGTATGCAACGCCCCGAGACCGAACCGCGTGCGGTGTTGCGTATGTAAGGAAAAGCGCAAGCGAG                                                                                                                                                                            ]


>consensus_9086#0 CACCTCACAGGTTTCGCAATGCGATTTTTTGATGCGCACATTGTAGAGATGGCTAAAAAA AGGGCGGGCTGTTCACACGGGTCACGTTTCCCCACGCATGGCAAACCGGCAAGAAAGTAG AGGAAAAGTTTGGATTTTGATATTATCCTTCGGCCCATTGGCCATTGGGGGGCCATTGTT TCTCTGGCATGGTGGTGAATAAGTAACTCTGTACGATTTCCATTTCCCCCCCTCTTTGTA CGTTTCCTGTTTGGAGATTTTCTTACACACAGGGGGGAGGGCAGCCCCATGCGCTCGTTG AACAAAACTGATCGAGATGCGAGGCGAAACAGACTGAGAATAATGCTGCAAAAAAGGGGT AGCTAATTGCGCCACTATTCGATACGATTTGTGTTACTATTATCATGTTTCCATCATGTT TGTTTGAAAAAAAAACGCCTGCTTTCCCTTTAGGGGTGTTAATGTGTAATTTATGTAAAA AAAACACGAAAACATCCTACAAGTGTACTACAAGCTTTATTACTTCAAATGCTTTTATCA ATATGTAATAGTTTTAGACGCGTGTCAGTAGAGAGGTGTATACTTTATTTAAGCTTTCAT TTTTGCATCTTCTTTTTAATGATCTGTTGTTTTTATTTGTATTAAAACATGAGCAGGTAT CAGAAAAGGGTCTATTTTGAGGTACTATAACGTTATAACGTACTATTATTTTTTCCCCNA ATTGNTTTGTGTAGCATTTGTACTGCTTCGTTTTCAGTTGTACATTTGGAGCAAACAGCA AACGAACAAAAAAAAAACGAGCTATTTCAAAATTTTATTGCATTATGATTTAGTTGGATG AGAGACCCCTGTGATGAAGAAAATTAACAACATGGAAACTGTTATTCATTTCGGTTAGTT TTACATACTTTGGCAAGCAAAGAGAGAGACGGAAGGGAGCAAAATAGCTTTTCTAGCTTC TCAAGATTTGGCTTTCATGTACGAAACGGGTTTTTTATATGTTTCACGCGTGAAATTTGC TTTCTTCAGTCCCACCAACCACCCTAAACGAAATGAGAAAAAGTGTCTAATGTGTGAGCG TTTCCCACAAACAATTGCAGCTAAAGTGCAGCTCTAATACACACACACACACAGCACTCT GATTGAAAGTGCTTGCAGAACTGTGCAGAAGATTATAATAAGTAAAGTAATCGAAACAGC AGGCAGCCGCCGCCCGGGGGCAAAAGCAGAGAGAAACTGAGCGTGTGCCGCACAAAACAA AACATATTAGCGGCGAGATCAGGTTAAATCGGCGTTACTGGACAAAAGGAGGAAGAAGAA GAAGAAAAAAAAACATTTGTGTGATAATATATAATAGTAATATGTTGTAATGTTTAATTT ATAACAATAATCCCTCTATCCCTTTAGTGGTGACAACAAAATGCGGGCGCCCGCGTGAGG TCGAAGCCTCCTACCTACCTACCTAAACCTACCTAGCATGTACTCTCTCTCTCTCTCTAC CTACTTTCCCTGGGTTCTCTGTTGACTACTAATCAAAGTATGCAACGCCCCGAGACCGAA CCGCGTGCGGTGTTGCGTATGTAAGGAAAAGCGCAAGCGAGTTGCGCGTACAAAACGCAT CTATGTAAAATAGTACAGAAAAAAGTGTGAGAACATAAAAAAAAACGTGCGAACCCCCTT AAGAAGGATGAAATGCAAGAAAGAGAGCGAGAGAGAGAGAGAGAGAGTAATAAAAATAAA AAGAANAAATATACACTAAACAAAGGCAGCATG



consensusID : consensus_9086#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 720
fasta sequence
                              [CCGCCCACGCGTCCGATTTGGCTTTCATGTTCGAAACGGCTTTTTTTATATGTTTCACGCGTGAAATTTGCTTTCTTCAGTACCACCACCACCCACCCGCAACGAAATGAGAAAAAGTGTCTAATGTGTGAGCGTTTCCCACAAACAATTGCAGCTAAAGTGCAGCTCTAATACACATAAACACACACAGCACTCTGATTGAAAGTGCTCGCAGAAGTGTGCAAAAGATTAAAATAAGTAAAGTAATCGAAACAGCAGGCAGCCGCCGCCCGGGGGCAAAAGCAGAGAGAAGCGAGCGTGTGCCGCACAAAACAAAACATATTAGCGGCGAGATCAGAGCAAATCGGAGTTACTGGACAAAAGGAGAAGGAAGAAGAAGAAAAAAAACATTTGTGTGATAATATATAATAGTAATATGTTGTAATGTTTAATTTATAACAATAATCCCTCTATCCCCTTTAGTGGCGACAACAAATTGCGGGCGCCCGCGTGAGGTCGAGAAAGCCTCCTACCTACCTACCTAAACCTACCTAGCATGTACTCTCTATCTCTCTCTCTCTACCTACTTTCCCTGGGTTCTCTGTTGACTACTAATCAAAGTATGCAACGCCCCGGGATCGAACCGTGTGCGCGGTGTTGCGTATGGTAGGAAAAGCGCAAGCGAGTTGCGCGAACAAAACGGATCTATGTAAAATAGTACAGAACAAAGTGTGAGACATA]

[+] EMBL BM616761             [CCGCCCACGCGTCCGATTTGGCTTTCATGTTCGAAACGGCTTTTTTTATATGTTTCACGCGTGAAATTTGCTTTCTTCAGTACCACCACCACCCACCCGCAACGAAATGAGAAAAAGTGTCTAATGTGTGAGCGTTTCCCACAAACAATTGCAGCTAAAGTGCAGCTCTAATACACATAAACACACACAGCACTCTGATTGAAAGTGCTCGCAGAAGTGTGCAAAAGATTAAAATAAGTAAAGTAATCGAAACAGCAGGCAGCCGCCGCCCGGGGGCAAAAGCAGAGAGAAGCGAGCGTGTGCCGCACAAAACAAAACATATTAGCGGCGAGATCAGAGCAAATCGGAGTTACTGGACAAAAGGAGAAGGAAGAAGAAGAAAAAAAACATTTGTGTGATAATATATAATAGTAATATGTTGTAATGTTTAATTTATAACAATAATCCCTCTATCCCCTTTAGTGGCGACAACAAATTGCGGGCGCCCGCGTGAGGTCGAGAAAGCCTCCTACCTACCTACCTAAACCTACCTAGCATGTACTCTCTATCTCTCTCTCTCTACCTACTTTCCCTGGGTTCTCTGTTGACTACTAATCAAAGTATGCAACGCCCCGGGATCGAACCGTGTGCGCGGTGTTGCGTATGGTAGGAAAAGCGCAAGCGAGTTGCGCGAACAAAACGGATCTATGTAAAATAGTACAGAACAAAGTGTGAGACATA]
[+] EMBL BM576339             [                                                                                                         ccgGAGAAAAAGTGTCTAATGTGTGAGCGTTTCCCACAAACAATTGCAGCTAAAGTGCAGCTCTAATACACATAAACACACACAGCACTCTGATTGAAAGTGCTCGCAGAAGTGTGCAAAAGATTAAAATAAGTAAAGTAATCGAAACAGCAGGCAGCCGCCGCCCGGGGGCAAAAGCAGAGAGAAGCGAGCGTGTGCCGCACAAAACAAAACATATTAGCGGCGAGATCAGAGCAAATCGGAGTTACTGGACAAAAGGAGAAGGAAGAAGAAGAAAAAAAACATTTGTGTGATAATATATAATAGTAATATGTTGTAATGTTTAATTTATAACAATAATCCCTCTATCCCCTTTAGTGGCGACAACAAATTGCGGGCGCCCGCGTGAGGTCGAGAAAGCCTCCTACCTACCTACCTAAACCTACCTAGCATGTACTCTCTATCTCTCTCTCTCTACCTACTTTCCCTGGGTTCTCTGTTGACTACTAATCAAAGTATGCAACGCCCCGGGATCGAACCGTGTGCGCGGTGTTGCGTATGGTAGGAAAAGCGCAAGCGAGTTGCGCGAACAAAACGGATCTATGTAAAATAGTACAG                  ]


>consensus_9086#1 CCGCCCACGCGTCCGATTTGGCTTTCATGTTCGAAACGGCTTTTTTTATATGTTTCACGC GTGAAATTTGCTTTCTTCAGTACCACCACCACCCACCCGCAACGAAATGAGAAAAAGTGT CTAATGTGTGAGCGTTTCCCACAAACAATTGCAGCTAAAGTGCAGCTCTAATACACATAA ACACACACAGCACTCTGATTGAAAGTGCTCGCAGAAGTGTGCAAAAGATTAAAATAAGTA AAGTAATCGAAACAGCAGGCAGCCGCCGCCCGGGGGCAAAAGCAGAGAGAAGCGAGCGTG TGCCGCACAAAACAAAACATATTAGCGGCGAGATCAGAGCAAATCGGAGTTACTGGACAA AAGGAGAAGGAAGAAGAAGAAAAAAAACATTTGTGTGATAATATATAATAGTAATATGTT GTAATGTTTAATTTATAACAATAATCCCTCTATCCCCTTTAGTGGCGACAACAAATTGCG GGCGCCCGCGTGAGGTCGAGAAAGCCTCCTACCTACCTACCTAAACCTACCTAGCATGTA CTCTCTATCTCTCTCTCTCTACCTACTTTCCCTGGGTTCTCTGTTGACTACTAATCAAAG TATGCAACGCCCCGGGATCGAACCGTGTGCGCGGTGTTGCGTATGGTAGGAAAAGCGCAA GCGAGTTGCGCGAACAAAACGGATCTATGTAAAATAGTACAGAACAAAGTGTGAGACATA



consensusID : consensus_9086#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 341
fasta sequence
                              [CCGAAGAGATTGTGTAAGGGCAAATGGAAAAGAAAAAACAATCGATACTGGTACACGTTTGCCATTACAGCCCAAGAAAGGCAAAAAAGGGCAAACACCTCACAGGTTTCGCAAGGCGATTTTTTGATGCGCACATTGTAGAGATGGCTAAAAAAGGGGGTGGGGCTGTTCACACGGGTCACGTTTCCCCACGCATGGAAAACCGGCAAGAAAGTAGAGGGAAACAAAGTTTGATTTTGATATTATCCTTCGGCCCATTGGCCATTGGGGAGGGGCCATTGTTTCTCTGGCATGGTGAATAAGTAACTCTGTACGATTTCCATTTCCCCCCCCCTCTTTGT]

[+] EMBL BM643231             [CCGAAGAGATTGTGTAAGGGCAAATGGAAAAGAAAAAACAATCGATACTGGTACACGTTTGCCATTACAGCCCAAGAAAGGCAAAAAAGGGCAAACACCTCACAGGTTTCGCAAGGCGATTTTTTGATGCGCACATTGTAGAGATGGCTAAAAAAGGGGGTGGGGCTGTTCACACGGGTCACGTTTCCCCACGCATGGAAAACCGGCAAGAAAGTAGAGGGAAACAAAGTTTGATTTTGATATTATCCTTCGGCCCATTGGCCATTGGGGAGGGGCCATTGTTTCTCTGGCATGGTGAATAAGTAACTCTGTACGATTTCCATTTCCCCCCCCCTCTTTGT]


>consensus_9086#2 CCGAAGAGATTGTGTAAGGGCAAATGGAAAAGAAAAAACAATCGATACTGGTACACGTTT GCCATTACAGCCCAAGAAAGGCAAAAAAGGGCAAACACCTCACAGGTTTCGCAAGGCGAT TTTTTGATGCGCACATTGTAGAGATGGCTAAAAAAGGGGGTGGGGCTGTTCACACGGGTC ACGTTTCCCCACGCATGGAAAACCGGCAAGAAAGTAGAGGGAAACAAAGTTTGATTTTGA TATTATCCTTCGGCCCATTGGCCATTGGGGAGGGGCCATTGTTTCTCTGGCATGGTGAAT AAGTAACTCTGTACGATTTCCATTTCCCCCCCCCTCTTTGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9086#0      CACCTCACAGGTTTCGCAATGCGATTTTTTGATGCGCACATTGTAGAGATGGCTAAAAAA 60
consensus_9086#1      ------------------------------------------------------------
consensus_9086#2      ------------------------------------------------------------
                                                                                  

consensus_9086#0      AGGGCGGGCTGTTCACACGGGTCACGTTTCCCCACGCATGGCAAACCGGCAAGAAAGTAG 120
consensus_9086#1      ------------------------------------------------------------
consensus_9086#2      ------------------------------------------------------------
                                                                                  

consensus_9086#0      AGGAAAAGTTTGGATTTTGATATTATCCTTCGGCCCATTGGCCATTGGGGGGCCATTGTT 180
consensus_9086#1      ------------------------------------------------------------
consensus_9086#2      ------------------------------------------------------------
                                                                                  

consensus_9086#0      TCTCTGGCATGGTGGTGAATAAGTAACTCTGTACGATTTCCATTTCCCCCCCTCTTTGTA 240
consensus_9086#1      ------------------------------------------------------------
consensus_9086#2      ------------------------------------------------------------
                                                                                  

consensus_9086#0      CGTTTCCTGTTTGGAGATTTTCTTACACACAGGGGGGAGGGCAGCCCCATGCGCTCGTTG 300
consensus_9086#1      ------------------------------------------------------------
consensus_9086#2      ------------------------------------------------------------
                                                                                  

consensus_9086#0      AACAAAACTGATCGAGATGCGAGGCGAAACAGACTGAGAATAATGCTGCAAAAAAGGGGT 360
consensus_9086#1      ------------------------------------------------------------
consensus_9086#2      ------------------------------------------------------------
                                                                                  

consensus_9086#0      AGCTAATTGCGCCACTATTCGATACGATTTGTGTTACTATTATCATGTTTCCATCATGTT 420
consensus_9086#1      ------------------------------------------------------------
consensus_9086#2      ------------------------------------------------------------
                                                                                  

consensus_9086#0      TGTTTGAAAAAAAAACGCCTGCTTTCCCTTTAGGGGTGTTAATGTGTAATTTATGTAAAA 480
consensus_9086#1      ------------------------------------------------------------
consensus_9086#2      ------------------------------------------------------------
                                                                                  

consensus_9086#0      AAAACACGAAAACATCCTACAAGTGTACTACAAGCTTTATTACTTCAAATGCTTTTATCA 540
consensus_9086#1      ------------------------------------------------------------
consensus_9086#2      ------------------------------------------------------------
                                                                                  

consensus_9086#0      ATATGTAATAGTTTTAGACGCGTGTCAGTAGAGAGGTGTATACTTTATTTAAGCTTTCAT 600
consensus_9086#1      ------------------------------------------------------------
consensus_9086#2      ------------------------------------------------------------
                                                                                  

consensus_9086#0      TTTTGCATCTTCTTTTTAATGATCTGTTGTTTTTATTTGTATTAAAACATGAGCAGGTAT 660
consensus_9086#1      ------------------------------------------------------------
consensus_9086#2      ------------------------------------------------------------
                                                                                  

consensus_9086#0      CAGAAAAGGGTCTATTTTGAGGTACTATAACGTTATAACGTACTATTATTTTTTCCCCNA 720
consensus_9086#1      ------------------------------------------------------------
consensus_9086#2      ------------------------------------------------------------
                                                                                  

consensus_9086#0      ATTGNTTTGTGTAGCATTTGTACTGCTTCGTTTTCAGTTGTACATTTGGAGCAAACAGCA 780
consensus_9086#1      ------------------------------------------------------------
consensus_9086#2      ------------------------------------------------------------
                                                                                  

consensus_9086#0      AACGAACAAAAAAAAAACGAGCTATTTCAAAATTTTATTGCATTATGATTTAGTTGGATG 840
consensus_9086#1      ------------------------------------------------------------
consensus_9086#2      ------------------------------------------------------------
                                                                                  

consensus_9086#0      AGAGACCCCTGTGATGAAGAAAATTAACAACATGGAAACTGTTATTCATTTCGGTTAGTT 900
consensus_9086#1      ------------------------------------------------------------
consensus_9086#2      ------------------------------------------------------------
                                                                                  

consensus_9086#0      TTACATACTTTGGCAAGCAAAGAGAGAGACGGAAGGGAGCAAAATAGCTTTTCTAGCTTC 960
consensus_9086#1      -----------------------------------------------CCGCCCACGCGTC 13
consensus_9086#2      ------------------------------------------------------------
                                                                                  

consensus_9086#0      TCAAGATTTGGCTTTCATGTACGAAACGGGTTTTTT-ATATGTTTCACGCGTGAAATTTG 1019
consensus_9086#1      C---GATTTGGCTTTCATGTTCGAAACGGCTTTTTTTATATGTTTCACGCGTGAAATTTG 70
consensus_9086#2      ------------------------------------------------------------
                                                                                  

consensus_9086#0      CTTTCTTCAGTCCCACCAAC---CACCCTAAACGAAATGAGAAAAAGTGTCTAATGTGTG 1076
consensus_9086#1      CTTTCTTCAGTACCACCACCACCCACCCGCAACGAAATGAGAAAAAGTGTCTAATGTGTG 130
consensus_9086#2      ------------------------------------------------------------
                                                                                  

consensus_9086#0      AGCGTTTCCCACAAACAATTGCAGCTAAAGTGCAGCTCTAATACACACA--CACACACAG 1134
consensus_9086#1      AGCGTTTCCCACAAACAATTGCAGCTAAAGTGCAGCTCTAATACACATAAACACACACAG 190
consensus_9086#2      ------------------------------------------------------------
                                                                                  

consensus_9086#0      CACTCTGATTGAAAGTGCTTGCAGA-ACTGTGCAGAAG--ATTATAATAAGTAAAGTAAT 1191
consensus_9086#1      CACTCTGATTGAAAGTGCTCGCAGA-AGTGTGCAAAAG--ATTAAAATAAGTAAAGTAAT 247
consensus_9086#2      ------------------CCGAAGAGATTGTGTAAGGGCAAATGGAAAAGAAAAAACAAT 42
                                          * *** * **** *   *  * *  ** *   ***  ***

consensus_9086#0      CGAAAC-AGCAGGCAGCCGCCGCCCGGGGGCAAAAGCAGAGAGAAACTGAGCGTGTGCCG 1250
consensus_9086#1      CGAAAC-AGCAGGCAGCCGCCGCCCGGGGGCAAAAGCAGAGAGAAGC-GAGCGTGTGCCG 305
consensus_9086#2      CGATACTGGTACACGTTTGCCATTACAGCCCAAGAAAGGCAAAAAA--GGGCAAACACCT 100
                      *** **  * *  *    ***      *  *** *   *  * **   * **     ** 

consensus_9086#0      CACAAA----ACAAAACATATTAGCGGCGAGATCAGGTTAAATCGGCGTTACTGGACAAA 1306
consensus_9086#1      CACAAA----ACAAAACATATTAGCGGCGAGATCAGAGCAAATCGGAGTTACTGGACAAA 361
consensus_9086#2      CACAGGTTTCGCAAGGCGATTTTTTGATGCGCACATTGTAGAGATGGCTAAAAAAGGGGG 160
                      ****       ***  *   **   *  * *  **    * *   *  * *         

consensus_9086#0      AGGAGGAAGAAGAAGAAGAAAAAAAAACATTTGTGTGATAAT---ATATAATAGTAATAT 1363
consensus_9086#1      AGGAGAAGGAAGAAGAAGAAAAAAAA-CATTTGTGTGATAAT---ATATAATAGTAATAT 417
consensus_9086#2      TGGGGCTGTTCACACGGGTCACGTTTCCCCACGCATGGAAAACCGGCAAGAAAGTAGAGG 220
                       ** *        *   *  *      *    *  **  **      *  * ****    

consensus_9086#0      GTTGTAATGTTTAATTTATAACAATAATCCCTCTATCCC-TTTAGTGGTGACAACAAAAT 1422
consensus_9086#1      GTTGTAATGTTTAATTTATAACAATAATCCCTCTATCCCCTTTAGTGGCGACAACAAATT 477
consensus_9086#2      GAAACAAAGTTTGATTT-TGATATTA--TCCTTCGGCCCATTGGCCATTGGGGAGGGGCC 277
                      *    ** **** **** * * * **   ***    *** **       *   *      

consensus_9086#0      GCGGGCGCCCGCGTGAGGTCGA---AGCCTCCTACCTACCTACCTAAACCTACCTAGCAT 1479
consensus_9086#1      GCGGGCGCCCGCGTGAGGTCGAGAAAGCCTCCTACCTACCTACCTAAACCTACCTAGCAT 537
consensus_9086#2      ATTGTTTCTCTGGCATGGTGAATA------------------AGTAACTCTGTACGATTT 319
                         *   * *  *   ***  *                      ***  **        *

consensus_9086#0      GTACTCTCT----CTCTCTCTCTACCTACTTTCCCTGGGTTCTCTGTTGACTACTAATCA 1535
consensus_9086#1      GTACTCTCTATCTCTCTCTCTCTACCTACTTTCCCTGGGTTCTCTGTTGACTACTAATCA 597
consensus_9086#2      CCATTTCCC---CCCCCCTCTTTGT----------------------------------- 341
                        * *  *     * * **** *                                     

consensus_9086#0      AAGTATGCAACGCCCCGAGACCGAACCGCGTGCG--GTGTTGCGTATGTAAGGAAAAGCG 1593
consensus_9086#1      AAGTATGCAACGCCCCGGGATCGAACCGTGTGCGCGGTGTTGCGTATGGTAGGAAAAGCG 657
consensus_9086#2      ------------------------------------------------------------
                                                                                  

consensus_9086#0      CAAGCGAGTTGCGCGTACAAAACGCATCTATGTAAAATAGTACAGAAAAAAGTGTGAGAA 1653
consensus_9086#1      CAAGCGAGTTGCGCGAACAAAACGGATCTATGTAAAATAGTACAGAACAAAGTGTGAGA- 716
consensus_9086#2      ------------------------------------------------------------
                                                                                  

consensus_9086#0      CATAAAAAAAAACGTGCGAACCCCCTTAAGAAGGATGAAATGCAAGAAAGAGAGCGAGAG 1713
consensus_9086#1      CATA-------------------------------------------------------- 720
consensus_9086#2      ------------------------------------------------------------
                                                                                  

consensus_9086#0      AGAGAGAGAGAGAGTAATAAAAATAAAAAGAANAAATATACACTAAACAAAGGCAGCATG 1773
consensus_9086#1      ------------------------------------------------------------
consensus_9086#2      ------------------------------------------------------------
                                                                                  




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)