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Anopheles gambiae
cluster # 9217 cluster # 9217       Sequences # 15       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9217#0 length = 694 sequences # 6  
consensus_9217#1 length = 664 sequences # 4  
consensus_9217#2 length = 606 sequences # 3  
consensus_9217#3 length = 550 sequences # 1  
consensus_9217#4 length = 453 sequences # 1  

consensusID : consensus_9217#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 694
fasta sequence
                              [CGACCCACGC--CCGGTGCGTCCGGTGCAGTTGTGTTTTGCTTTGTTGTGTTGTGCAGCCCTTTGCTCGCAGGAACGAAAGTAGTGTAGTTCTGTTGAAAGGCATTCCTCTCACACAAACAGCTCCCAAAATGCCAGTTGATATTAAACGTGTGCTAGTGTGCGATGCCGTTGACAATGCGTGCGTCAAGCTGCTGCAAGACCATGGCATTCAAGTTGACTACAAGCTGAAGCTGTCACAGGATGAGCTGATTAAGGAGGTTAAGAATTATGATGCTCTCATCGTGCGGTCGGACACGAAAATTACGGCCGAGATTTTGGACGCGGGCGCCGGCCGGGTGAAGGCGGTC-GGACGTGCCGGTGCCGGCGTGGACAACATCAACATCGAAGCAGCGACGCGAAACAACGTGCTGGTGCTGAACACTCCCGGCGGCAATTCG-ATTTCGGCGTGCGAGCTGACATGCTTCCTGA-TCGGGGCGCTGGCCCGCCCCATCTGCCCGGCGGCCACCAG-CATGAA-GGAGGGCCGCTGGGACCGGAAGCTGTACTCC-GGCTCGGAGCTGTACGGCAAGACGCTCGCCAT-CCTCGGGCTCGGTCGCAT-CGGGCGCGAGGTCGGCGTACGCATGAACGCGTTCGGGATGCGCGTGATCGGGTTCGATCCGATCACGACGGCCGCGGAGGCGAAGGCGGCCGGCATCGA]

[+] EMBL BM630015             [ GACCCACGCGTCCG  GCGTCCGGTGCAGTTGTGTTTTGCTTTGTTGTGTTGTGCAGCCCTTTGCTCGCAGGAACGAAAGTAGTGTAGTTCTGTTGAAAGGCATTCCTCTCACACAAACAGCTCCCAAAATGCCAGTTGATATTAAACGTGTGCTAGTGTGCGATGCCGTTGACAATGCGTGCGTCAAGCTGCTGCAAGACCATGGCATTCAAGTTGACTACAAGCTGAAGCTGTCACAGGATGAGCTGATTAAGGAGGTTAAGAATTATGATGCTCTCATCGTGCGGTCGGACACGAAAATTACGGCCGAGATTTTGGACGCGGGCGCCGGCCGGGTGAAGGCGGTC GGACGTGCCGGTGCCGGCGTGGACAACATCAACATCGAAGCAGCGACGCGAAACAACGTGCTGGTGCTGAACACTCCCGGCGGCAATTCG ATTTCGGCGTGCGAGCTGACATGCTTCCTGA                                                                                                                                                                                                                                        ]
[+] EMBL BM632285             [ccgCCCACGCGTCCGGTGCGTCCGGTGCAGTTGTGTTTTGCTTTGTTGTGTTGTGCAGCCCTTTGCTCGCAGGAACGAAAGTAGTGTAGTTCTGTTGAAAGGCATTCCTCTCACACAAACAGCTCCCAAAATGCCAGTTGATATTAAACGTGTGCTAGTGTGCGATGCCGTTGACAATGCGTGCGTCAAGCTGCTGCAAGACCATGGCATTCAAGTTGACTACAAGCTGAAGCTGTCACAGGATGAGCTGATTAAGGAGGTTAAGAATTATGATGCTCTCATCGTGCGGTCGGACACGAAAATTACGGCCGAGATTTTGGACGCGGGCGCCGGCCGGGTGAAGGCGGTC GGACGTGCCGGTGCCGGCGTGGACAACATCAACATCGAAGCAGCGACGCGAAACAACGTGCTGGTGCTGAACACTCCCGGCGGCAATTCG ATTTCGGCGTGCGAGCTGACATGCTTCCTGA TCGGGGCGCTGGCCCGCCCCATCTGCCCGGCGGCCACCAG CATGAA GGAGGGCCGCTGGGACCGGAAGCTGTACTCC GGCTCGGAGCTGTACGGCAAGACGCTCGCCAT CCTCGGGCTCGG                                                                                                          ]
[+] EMBL BM595883             [            CCGGTGCGTCCGGTGCAGTTGTGTTTTGCCTTGTTGTGTTGTGCAGCCCTTTGCTCGCAGGAACGAAAGTAGTGTAGTTCAGTTGAAAGGCATTTCTCTCACACAAACAGCTCCCAAAATGCCAGTTGATATTAAGCGTGTGCTAGTGTGCGATGCCGTTGACAATGCGTGCGTCAAGCTGCTGCAAGACCATGGCATTCAAGTTGACTACAAGCTGAAGCTGTCACAGGATGAGCTGATTAAGGAGGTTAAGAATTATGATGCTCTCATCGTGCGGTCGGACACGAAAATTACGGCCGAGATTTTGGACGCGGGCGCCGGCCGGGTGAAGGCGGTC GGACGTGCCGGTGCCGGCGTGGACAACATCAACATCGAAGCAGCGACGCGAAACAACGTGCTGGTGCTGAACACTCCCGGAGGCAATTCG ATTTCGGCGTGCGAGCTGACGTGCTTCCTGA TCGGGGCGCTGGCCCGCCCCATCTGCCCGGCGGCCACCAG CATGAAGGGAGGGCCGCTGGGACCGGAAGCTGTACTCC GGCTCGGAGCTGTACGGCAAGACGCTCGCCAT CCTCGGGCTCGGTCGCATCCGGGCGCGAGGTCGGCGTACGCATGAAC                                                                       ]
[+] EMBL BM586833             [            CCGGTGCGTCCGGTGCAGTTGTGTTTTGCTTTGTTGTGTTGTGCAGCCCTTTGCTCGCAGGAACGAAAGTAGTGTAGTTCTGTTGAAAGGCATTCCTCTCACACAAACAGCTCCCAAAATGCCAGTTGATATTAAACGTGTGCTAGTGTGCGATGCCGTTGACAATGCGTGCGTCAAGCTGCTGCAAGACCATGGCATTCAAGTTGACTACAAGCTGAAGCTGTCACAGGATGAGCTGATTAAGGAGGTTAAGAATTATGATGCTCTCATCGTGCGGTCGGACACGAAAATTACGGCCGAGATTTTGGACGCGGGCGCCGGCCGGGTGAAGGCGGTCGGGACGTGCCGGTGCCGGCGTGGACAACATCAACATCGAAGCAGCGACGCGAAACAACGTGCTGGTGCTGAACACTCCCGGCGGCAATTCGCATTTCGGCGTGCGAGCTGACATGCTTCCTGATTCGGGGCGCTGGCCCGCCCCATCTGCCCGGCGGCCACCAGCCATGAA GGAGGGCCGCTGGGACCGGAAGCTGTACTCCGGGCTCGGAGCTGTACGGCAAGACGCTCGCCATCCCTCGGGCTCGGTCGCAT                                                                                                    ]
[+] EMBL BM587769             [       ccg  acaGTGCGTCCGGTGCAGTTGTGTTTTGCTTTGTTGTGTTGTGCAGCCCTTTGCTCGCAGGAACGAAAGTAGTGTAGTTCTGTTGAAAGGCATTCCTCTCACACAAACAGCTCCCAAAATGCCAGTTGATATTAAACGTGTGCTAGTGTGCGATGCCGTTGACAATGCGTGCGTCAAGCTGCTGCAAGACCATGGCATTCAAGTTGACTACAAGCTGAAGCTGTCACAGGATGAGCTGATTAAGGAGGTTAAGAATTATGATGCTCTCATCGTGCGGTCGGACACGAAAATTACGGCCGAGATTTTGGACGCGGGCGCCGGCCGGGTGAAGGCGGTC GGACGTGCCGGTGCCGGCGTGGACAACATCAACATCGAAGCAGCGACGCGAAACAACGTGCTGGTGCTGAACACTCCCGGCGGCAATTCG ATTTCGGCGTGCGAGCTGACATGCTTCCTGA TCGGGGCGCTGGCCCGCCCCATCTGCCCGGCGGCCACCAG CATGAA GGAGGGCCGCTGGGACCGGAAGCTGTACTCC GGCTCGGAGCTGTACGGCAAGACGCTCGCCAT CCTCGGGCTCGGTCGCAT CGGGCGCGAGGTCGGCGTACGCATGAACGCGTTCGGGATGCGCGTGATCGGGTTCGATCCGATCACGACGG                            ]
[+] EMBL BM578129             [              ccgGCGTCCGGTGCAGTTGTGTTTTGCTTTGTTGTGTTGTGCAGCCCTTTGCTCGCAGGAACGAAAGTAGTGTAGTTCTGTTGAAAGGCATTCCTCTCACACAAACAGCTCCCAAAATGCCAGTTGATATTAAACGTGTGCTAGTGTGCGATGCCGTTGACAATGCGTGCGTCAAGCTGCTGCAAGACCATGGCATTCAAGTTGACTACAAGCTGAAGCTGTCACAGGATGAGCTGATTAAGGAGGTTAAGAATTATGATGCTCTCATCGTGCGGTCGGACACGAAAATTACGGCCGAGATTTTGGACGCGGGCGCCGGCCGGGTGAAGGCGGTC GGACGTGCCGGTGCCGGCGTGGACAACATCAACATCGAAGCAGCGACGCGAAACAACGTGCTGGTGCTGAACACTCCCGGCGGCAATTCG ATTTCGGCGTGCGAGCTGACATGCTTCCTGA TCGGGGCGCTGGCCCGCCCCATCTGCCCGGCGGCCACCAG CATGAAGGGAGGGCCGCTGGGACCGGAAGCTGTACTCC GGCTCGGAGCTGTACGGCAAGACGCTCGCCAT CCTCGGGCTCGGTCGCAT CGGGCGCGAGGTCGGCGTACGCATGAACGCGTTCGGGATGCGCGTGATCGGGTTCGATCCGATCACGACGGCCGCGGAGGCGAAGGCGGCCGGCATCGA]


>consensus_9217#0 CGACCCACGCCCGGTGCGTCCGGTGCAGTTGTGTTTTGCTTTGTTGTGTTGTGCAGCCCT TTGCTCGCAGGAACGAAAGTAGTGTAGTTCTGTTGAAAGGCATTCCTCTCACACAAACAG CTCCCAAAATGCCAGTTGATATTAAACGTGTGCTAGTGTGCGATGCCGTTGACAATGCGT GCGTCAAGCTGCTGCAAGACCATGGCATTCAAGTTGACTACAAGCTGAAGCTGTCACAGG ATGAGCTGATTAAGGAGGTTAAGAATTATGATGCTCTCATCGTGCGGTCGGACACGAAAA TTACGGCCGAGATTTTGGACGCGGGCGCCGGCCGGGTGAAGGCGGTCGGACGTGCCGGTG CCGGCGTGGACAACATCAACATCGAAGCAGCGACGCGAAACAACGTGCTGGTGCTGAACA CTCCCGGCGGCAATTCGATTTCGGCGTGCGAGCTGACATGCTTCCTGATCGGGGCGCTGG CCCGCCCCATCTGCCCGGCGGCCACCAGCATGAAGGAGGGCCGCTGGGACCGGAAGCTGT ACTCCGGCTCGGAGCTGTACGGCAAGACGCTCGCCATCCTCGGGCTCGGTCGCATCGGGC GCGAGGTCGGCGTACGCATGAACGCGTTCGGGATGCGCGTGATCGGGTTCGATCCGATCA CGACGGCCGCGGAGGCGAAGGCGGCCGGCATCGA



consensusID : consensus_9217#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 664
fasta sequence
                              [CCGCGGACGCGTGGGCGGACGCGCGGCAGTGCGTCCGGTGCAGTTGTGTTTTGCTTTGTTGTGTTGTGCAGCCCTTTGCTCGCAGGAACGAAAGTAGTGTAGTTCTGTTGAAAGGCATTCCTCTCACACAAACAGCTCCCAAAATGCCAGTTGATATTAAACGTGTGCTAGTGTGCGATGCCGTTGACAATGCGTGCGTCAAGCTGCTGCAAGACCATGGCATTCAAGTTGACTACAAGCTGAAGCTGTCACAGGATGAGCTGATTAAGGAGGTTAAGAATTATGATGCTCTCATCGTGCGGTCGGACACGAAAATTACGGCCGAGATTTTGGACGCGGGCGCCGGCCGGGTGAAGGCGGTCGGACGTGCCGGTGCCGGCGTGGACAACATCAACATCGAAGCAGCGACGCGAAACAACGTGCTGGTGCTGAACACTCCCGGCGGCAATTCGATTTCGGCGTGCGAGCTGACATGCTTCCTGATCGGGGCGCTGGCCCGCCCCATCTGCCCGGCGGCCACCAGCATGAAGGAGGGCCGCTGGGACCGGAAGCTGTACTCCGGCTCGGAGCTGTACGGCAAGACGCTCGCCATCCTCGGGCTCGGTCGCATCGGGCGCGAGGTCGGCGTACGCATGAACGCGTTCGGGATGCGCGTGATCGGGTT]

[+] EMBL BM583540             [CCGCGGACGCGTGGGCGGACGCGTGGGAGTGCGTCCGGTGCAGTTGTGTTTTGCTTTGTTGTGTTGTGCAGCCCTTTGCTCGCAGGAACGAAAGTAGTGTAGTTCTGTTGAAAGGCATTCCTCTCACACAAACAGCTCCCAAAATGCCAGTTGATATTAAACGTGTGCTAGTGTGCGATGCCGTTGACAATGCGTGCGTCAAGCTGCTGCAAGACCATGGCATTCAAGTTGACTACAAGCTGAAGCTGTCACAGGATGAGCTGATTAAGGAGGTTAAGAATTATGATGCTCTCATCGTGCGGTCGGACACGAAAATTACGGCCGAGATTTTGGACGCGGGCGCCGGCCGGGTGAAGGCGGTCGGACGTGCCGGTGCCGGCGTGGACAACATCAACATCGAAGCAGCGACGCGAAACAACGTGCTGGTGCTGAACACTCCCGGCGGCAATTCGATTTCGGCGTGCGAGCTGACATGCTTCCTGATCGGGGCGCTGGCCCGCCCCATCTGCCCGGCGGCCACCAGCATGAAGGAGGGCCGCTGGGACCGGAAGCTGTACTCCGGCTCGGAGCTGTACGGCAAGACGCTCGCCATCCTCGGGCTCGGTCGCATCGGGCGCGAGGTCGGCGTACGCATGAACGCGTTCGGGATGCGCGTGATCGGGTT]
[+] EMBL BM583678             [                      cCGACAGTGCGTCCGGTGCAGTTGTGTTTTGCTTTGTTGTGTTGTGCAGCCCTTTGCTCGCAGGAACGAAAGTAGTGTAGTTCTGTTGAAAGGCATTCCTCTCACACAAACAGCTCCCAAAATGCCAGTTGATATTAAACGTGTGCTAGTGTGCGATGCCGTTGACAATGCGTGCGTCAAGCTGCTGCAAGACCATGGCATTCAAGTTGACTACAAGCTGAAGCTGTCACAGGATGAGCTGATTAAGGAGGTTAAGAATTATGATGCTCTCATCGTGCGGTCGGACACGAAAATTACGGCCGAGATTTTGGACGCGGGCGCCGGCCGGGTGAAGGCGGTCGGACGTGCCGGTGCCGGCGTGGACAACATCAACATCGAAGCAGCGACGCGAAACAACGTGCTGGTGCTGAACACTCCCGGCGGCAATTCGATTTCGGCGTGCGAGCTGACATGCTTCCTGATCGGGGCGCTGGCCCGCCCCATCTGCCCGGCGGCCACCAGCATGAAGGAGGGCCGCTGGGACCGGAAGCTGTACTCCGGCTCGGAGCTGTACGGCAAGACGCTCGCCATCCTCGGGCTCGGTCGCA                                                       ]
[+] EMBL BM586794             [                       ccGCAGTGCGTCCGGTGCAGTTGTGTTTTGCTTTGTTGTGTTGTGCAGCCCTTTGCTCGCAGGAACGAAAGTAGTGTAGTTCTGTTGAAAGGCATTCCTCTCACACAAACAGCTCCCAAAATGCCAGTTGATATTAAACGTGTGCTAGTGTGCGATGCCGTTGACAATGCGTGCGTCAAGCTGCTGCAAGACCATGGCATTCAAGTTGACTACAAGCTGAAGCTGTCACAGGATGAGCTGATTAAGGAGGTTAAGAATTATGATGCTCTCATCGTGCGGTCGGACACGAAAATTACGGCCGAGATTTTGGACGCGGGCGCCGGCCGGGTGAAGGCGGTCGGACGTGCCGGTGCCGGCGTGGACAACATCAACATCGAAGCAGCGACGCGAAACAACGTGCTGGTGCTGAACACTCCCGGCGGCAATTCGATTTCGGCGTGCGAGCTGACATGCTTCCTGATCGGGGCGCTGGCCCGCCCCATCTGCCCGGCGGCCACCAGCATGAAGGAGGGCCGCTGGGACCGGAAGCTGTACTCCGGCTCGGAGCTGTACGGCAAGACGCTCGCCATCCTCGGGCTCGGTCGCATCGGGCGCGAGGTCGGC                                      ]
[+] EMBL BM590785             [                                       ccgGTTGTGTTTTGCTTTGTTGTGTTGTGCAGCCCTTTGCTCGCAGGAACGAAAGTAGTGTAGTTCTGTTGAAAGGCATTCCTCTCACACAAACAGCTCCCAAAATGCCAGTTGATATTAAACGTGTGCTAGTGTGCGATGCCGTTGACAATGCGTGCGTCAAGCTGCTGCAAGACCATGGCATTCAAGTTGACTACAAGCTGAAGCTGTCACAGGATGAGCTGATTAAGGAGGTTAAGAATTATGATGCTCTCATCGTGCGGTCGGACACGAAAATTACGGCCGAGATTTTGGACGCGGGCGCCGGCCGGGTGAAGGCGGTCGGACGTGCCGGTGCCGGCGTGGACAACATCAACATCGAAGCAGCGA                                                                                                                                                                                                                                                                ]


>consensus_9217#1 CCGCGGACGCGTGGGCGGACGCGCGGCAGTGCGTCCGGTGCAGTTGTGTTTTGCTTTGTT GTGTTGTGCAGCCCTTTGCTCGCAGGAACGAAAGTAGTGTAGTTCTGTTGAAAGGCATTC CTCTCACACAAACAGCTCCCAAAATGCCAGTTGATATTAAACGTGTGCTAGTGTGCGATG CCGTTGACAATGCGTGCGTCAAGCTGCTGCAAGACCATGGCATTCAAGTTGACTACAAGC TGAAGCTGTCACAGGATGAGCTGATTAAGGAGGTTAAGAATTATGATGCTCTCATCGTGC GGTCGGACACGAAAATTACGGCCGAGATTTTGGACGCGGGCGCCGGCCGGGTGAAGGCGG TCGGACGTGCCGGTGCCGGCGTGGACAACATCAACATCGAAGCAGCGACGCGAAACAACG TGCTGGTGCTGAACACTCCCGGCGGCAATTCGATTTCGGCGTGCGAGCTGACATGCTTCC TGATCGGGGCGCTGGCCCGCCCCATCTGCCCGGCGGCCACCAGCATGAAGGAGGGCCGCT GGGACCGGAAGCTGTACTCCGGCTCGGAGCTGTACGGCAAGACGCTCGCCATCCTCGGGC TCGGTCGCATCGGGCGCGAGGTCGGCGTACGCATGAACGCGTTCGGGATGCGCGTGATCG GGTT



consensusID : consensus_9217#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 606
fasta sequence
                              [CCGGTTTGGAACGGTGCGTCCGGTGCAGTTGTGTTTTGCCTTGTTGTGTTGTGCAGCCCTTTGCTCGCAGGAACGAAAGTAGTGTAGTTCAGTTGAAAGGCATTTCTCTCACACAAACAGCTCCCAAAATGCCAGTTGATATTAAGCGTGTGCTAGTGTGCGATGCCGTTGACAATGCGTGCGTCAAGCTGCTGCAAGACCATGGCATTCAAGTTGACTACAAGCTGAAGCTGTCACAGGATGAGCTGATTAAGGAGGTTAAGAATTATGATGCTCTCATCGTGCGGTCGGACACGAAAATTACGGCCGAGATTTTGGACGCGGGCGCCGGCCGGGTGAAGGCGGTCGGACGTGCCGGTGCCGGCGTGGACAACATCAACATCGAAGCAGCGACGCGAAACAACGTGCTGGTGCTGAACACTCCCGGAGGCAATTCGATTTCGGCGTGCGAGCTGACGTGCTTTCCTGATTCGGGGCGCTGGCCCGCCCCATCTGCCCGGCGGCCACCAGCATGAAGGAGGGCCGCTGGGACCGGAAGCTGTACTCCGGGCTCGGAGCTGTACGGCAAGACGCTCGCCATCCCTCGGGCTCGGTCGCATCCGGGCG]

[+] EMBL BM598548             [CCGGTTTGGAACAGTGCGTCCGGTGCAGTTGTGTTTTGCCTTGTTGTGTTGTGCAGCCCTTTGCTCGCAGGAACGAAAGTAGTGTAGTTCAGTTGAAAGGCATTTCTCTCACACAAACAGCTCCCAAAATGCCAGTTGATATTAAGCGTGTGCTAGTGTGCGATGCCGTTGACAATGCGTGCGTCAAGCTGCTGCAAGACCATGGCATTCAAGTTGACTACAAGCTGAAGCTGTCACAGGATGAGCTGATTAAGGAGGTTAAGAATTATGATGCTCTCATCGTGCGGTCGGACACGAAAATTACGGCCGAGATTTTGGACGCGGGCGCCGGCCGGGTGAAGGCGGTCGGACGTGCCGGTGCCGGCGTGGACAACATCAACATCGAAGCAGCGACGCGAAACAACGTGCTGGTGCTGAACACTCCCGGAGGCAATTCGATTTCGGCGTGCGAGCTGACGTGCTTTCCTGATTCGGGGCGCTGGCCCGCCCCATCTGCCCGGCGGCCACCAGCATGAAGGAGGGCCGCTGGGACCGGAAGCTGTACTCCGGGCTCGGAGCTGTACGGCAAGACGCTCGCCATCCCTCGGGCTCGGTCGCATCCGGGCG]
[+] EMBL BM632362             [          cCGGTGCGTCCGGTGCAGTTGTGTTTTGCCTTGTTGTGTTGTGCAGCCCTTTGCTCGCAGGAACGAAAGTAGTGTAGTTCAGTTGAAAGGCATTTCTCTCACACAAACAGCTCCCAAAATGCCAGTTGATATTAAGCGTGTGCTAGTGTGCGATGCCGTTGACAATGCGTGCGTCAAGCTGCTGCAAGACCATGGCATTCAAGTTGACTACAAGCTGAAGCTGTCACAGGATGAGCTGATTAAGGAGGTTAAGAATTATGATGCTCTCATCGTGCGGTCGGACACGAAAATTACGGCCGAGATTTTGGACGCGGGCGCCGGCCGGGTGAAGGCGGTCGGACGTGCCGGTGCCGGCGTGGACAACATCAACATCGAAGCAGCGACGCGAAACAACGTGCTGGTGCTGAACACTCCCGGAGGCAATTCGATTTCGGCGTGCGAGCTGACGTGC TTCCTGA TCGGGGCGCTGGCCCGCCCCATCTGCCCGGCGGCCACCAGCATGAAGGAGGGCCGCTGGGACCGGAAGCTGTACTCC GGCTCGGAGCTGTACGGCAAGACGCTCGCCAT CCTCGGGCTCGGTCGCAT       ]
[+] EMBL AL695041             [        ccgaGGTGTGT CGG GCAGTTGTGTTTTGC  TGTTGTGTTGTGCAG CCTTTGCTCGCAGGAACGAAAGTAGTGTAGTTCAGTTGAAAGGCATTTCTCTCACACAAACAGGTCCCAAAATGCCAGTTGATATTAAGCGTGTGCTAGTGTGCGATGCCGTTGACAATGCGTG                                                                                                                                                                                                                                                                                                                                                                                                                                         ]


>consensus_9217#2 CCGGTTTGGAACGGTGCGTCCGGTGCAGTTGTGTTTTGCCTTGTTGTGTTGTGCAGCCCT TTGCTCGCAGGAACGAAAGTAGTGTAGTTCAGTTGAAAGGCATTTCTCTCACACAAACAG CTCCCAAAATGCCAGTTGATATTAAGCGTGTGCTAGTGTGCGATGCCGTTGACAATGCGT GCGTCAAGCTGCTGCAAGACCATGGCATTCAAGTTGACTACAAGCTGAAGCTGTCACAGG ATGAGCTGATTAAGGAGGTTAAGAATTATGATGCTCTCATCGTGCGGTCGGACACGAAAA TTACGGCCGAGATTTTGGACGCGGGCGCCGGCCGGGTGAAGGCGGTCGGACGTGCCGGTG CCGGCGTGGACAACATCAACATCGAAGCAGCGACGCGAAACAACGTGCTGGTGCTGAACA CTCCCGGAGGCAATTCGATTTCGGCGTGCGAGCTGACGTGCTTTCCTGATTCGGGGCGCT GGCCCGCCCCATCTGCCCGGCGGCCACCAGCATGAAGGAGGGCCGCTGGGACCGGAAGCT GTACTCCGGGCTCGGAGCTGTACGGCAAGACGCTCGCCATCCCTCGGGCTCGGTCGCATC CGGGCG



consensusID : consensus_9217#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 550
fasta sequence
                              [CCGCCCACGCGTCCGGTGGTATGGTGTGAATAAAAATTGGAATATCTCATAATTTCCAGTGTCCCGTGCCGTGAAAATCCGATCAATCGACAGCCCATACGCCAGAGTATCGGAAAAGTGTGCGGAACCAACATCGAAGAGGTTTTACGTAAGTAAAAACGGGGCTTGAAAATTTGCACGCTCTGCGCTACGGCCATTAGATTTTTTCTTCTTCGCTTCCCATATCGCCGCCATTGCAGTACATAACTAGCAGAGAGAAAGACAGAGACAGGCAGTTAGCGTATAAGCAAATAGGAAGGAAGAAAAGAGAGCACCAGATCGAGAGTTTTGCAGACGACGACGACGACGACGAGCCCCACAGCAAAGCAGAGTCCCATTTTATATCGATTGCGCACAAGTCACAGCTTAGCATAAAACTATCCCGAAAGCAGCAGCAGCAGCCATTTTTGCCACAGTACCTGGTTTAGTAAACGAATCAAACGACCAATAAAATGCAGTTCCAAGGCACAGCACAACCGCACCAGGGTGGCTTCCGCGGACCGCGTCCGGA]

[+] EMBL BM610739             [CCGCCCACGCGTCCGGTGGTATGGTGTGAATAAAAATTGGAATATCTCATAATTTCCAGTGTCCCGTGCCGTGAAAATCCGATCAATCGACAGCCCATACGCCAGAGTATCGGAAAAGTGTGCGGAACCAACATCGAAGAGGTTTTACGTAAGTAAAAACGGGGCTTGAAAATTTGCACGCTCTGCGCTACGGCCATTAGATTTTTTCTTCTTCGCTTCCCATATCGCCGCCATTGCAGTACATAACTAGCAGAGAGAAAGACAGAGACAGGCAGTTAGCGTATAAGCAAATAGGAAGGAAGAAAAGAGAGCACCAGATCGAGAGTTTTGCAGACGACGACGACGACGACGAGCCCCACAGCAAAGCAGAGTCCCATTTTATATCGATTGCGCACAAGTCACAGCTTAGCATAAAACTATCCCGAAAGCAGCAGCAGCAGCCATTTTTGCCACAGTACCTGGTTTAGTAAACGAATCAAACGACCAATAAAATGCAGTTCCAAGGCACAGCACAACCGCACCAGGGTGGCTTCCGCGGACCGCGTCCGGA]


>consensus_9217#3 CCGCCCACGCGTCCGGTGGTATGGTGTGAATAAAAATTGGAATATCTCATAATTTCCAGT GTCCCGTGCCGTGAAAATCCGATCAATCGACAGCCCATACGCCAGAGTATCGGAAAAGTG TGCGGAACCAACATCGAAGAGGTTTTACGTAAGTAAAAACGGGGCTTGAAAATTTGCACG CTCTGCGCTACGGCCATTAGATTTTTTCTTCTTCGCTTCCCATATCGCCGCCATTGCAGT ACATAACTAGCAGAGAGAAAGACAGAGACAGGCAGTTAGCGTATAAGCAAATAGGAAGGA AGAAAAGAGAGCACCAGATCGAGAGTTTTGCAGACGACGACGACGACGACGAGCCCCACA GCAAAGCAGAGTCCCATTTTATATCGATTGCGCACAAGTCACAGCTTAGCATAAAACTAT CCCGAAAGCAGCAGCAGCAGCCATTTTTGCCACAGTACCTGGTTTAGTAAACGAATCAAA CGACCAATAAAATGCAGTTCCAAGGCACAGCACAACCGCACCAGGGTGGCTTCCGCGGAC CGCGTCCGGA



consensusID : consensus_9217#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 453
fasta sequence
                              [CCGCCCACGCGTCCGTACCCGAGGAAGTCGGTCGCCAAGCGCAGCCGCATGGTATGCGTACAATATAATTAAGTACCCGCTGACGACCGAAACGATGATGAACAAGATCGAGGACAACAACACGCTCGTCTTCCTGATTCACCTGCGCGCCAACAAGAACCACGTGAAGGCCGTCGTGAGGAAGCTGTACGACGTGAAGGTGCTGAAGATCAACACGCTGGTGCGACCGAACGGCAAGAAGAAGGTGTACGTGCGGTTAACGCGCGACTACGATGCGCTCGACATTGCCAACAAGATCGGCATCATCTAAAGCGCTAGTTTTGTACGGCTTTTTGGCGAACACTTCTCTCTCTTTCTCCTACCACGGTGGAGAATAATGGGGAGGAGTGTTCAGAGCGGAAAAAGGAGAGGATGCTGCGTCGTGCGTATCGGAGTTTTTTTACACGGTGTGTG]

[+] EMBL BM598065             [CCGCCCACGCGTCCGTACCCGAGGAAGTCGGTCGCCAAGCGCAGCCGCATGGTATGCGTACAATATAATTAAGTACCCGCTGACGACCGAAACGATGATGAACAAGATCGAGGACAACAACACGCTCGTCTTCCTGATTCACCTGCGCGCCAACAAGAACCACGTGAAGGCCGTCGTGAGGAAGCTGTACGACGTGAAGGTGCTGAAGATCAACACGCTGGTGCGACCGAACGGCAAGAAGAAGGTGTACGTGCGGTTAACGCGCGACTACGATGCGCTCGACATTGCCAACAAGATCGGCATCATCTAAAGCGCTAGTTTTGTACGGCTTTTTGGCGAACACTTCTCTCTCTTTCTCCTACCACGGTGGAGAATAATGGGGAGGAGTGTTCAGAGCGGAAAAAGGAGAGGATGCTGCGTCGTGCGTATCGGAGTTTTTTTACACGGTGTGTG]


>consensus_9217#4 CCGCCCACGCGTCCGTACCCGAGGAAGTCGGTCGCCAAGCGCAGCCGCATGGTATGCGTA CAATATAATTAAGTACCCGCTGACGACCGAAACGATGATGAACAAGATCGAGGACAACAA CACGCTCGTCTTCCTGATTCACCTGCGCGCCAACAAGAACCACGTGAAGGCCGTCGTGAG GAAGCTGTACGACGTGAAGGTGCTGAAGATCAACACGCTGGTGCGACCGAACGGCAAGAA GAAGGTGTACGTGCGGTTAACGCGCGACTACGATGCGCTCGACATTGCCAACAAGATCGG CATCATCTAAAGCGCTAGTTTTGTACGGCTTTTTGGCGAACACTTCTCTCTCTTTCTCCT ACCACGGTGGAGAATAATGGGGAGGAGTGTTCAGAGCGGAAAAAGGAGAGGATGCTGCGT CGTGCGTATCGGAGTTTTTTTACACGGTGTGTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9217#0      ----------------CGACCCACGCCCGGTGCGTCCGGTGCAGTTGTGTTTTGCTTTGT 44
consensus_9217#2      ---------------CCGGTTTG-GAACGGTGCGTCCGGTGCAGTTGTGTTTTGCCTTGT 44
consensus_9217#1      CCGCGGACGCGTGGGCGGACGCGCGG-CAGTGCGTCCGGTGCAGTTGTGTTTTGCTTTGT 59
consensus_9217#4      ------------------------------------------------------------
consensus_9217#3      ------------------------------------------------------------
                                                                                  

consensus_9217#0      TGTGTTGTGCAGCCCTTTGCTCGCAGGAACGAAAGTAGTGTAGTTCTGTTGAAAGGCATT 104
consensus_9217#2      TGTGTTGTGCAGCCCTTTGCTCGCAGGAACGAAAGTAGTGTAGTTCAGTTGAAAGGCATT 104
consensus_9217#1      TGTGTTGTGCAGCCCTTTGCTCGCAGGAACGAAAGTAGTGTAGTTCTGTTGAAAGGCATT 119
consensus_9217#4      ------------------------------------------------------------
consensus_9217#3      -------------------------------------------CCGCCCACGCGTCCGGT 17
                                                                                  

consensus_9217#0      CCTCTCACACAAACAGCTCCCAAAATGCCAGTTGATATTAAACGTGTGCTAGTGTGCGAT 164
consensus_9217#2      TCTCTCACACAAACAGCTCCCAAAATGCCAGTTGATATTAAGCGTGTGCTAGTGTGCGAT 164
consensus_9217#1      CCTCTCACACAAACAGCTCCCAAAATGCCAGTTGATATTAAACGTGTGCTAGTGTGCGAT 179
consensus_9217#4      -------------------------------------------CCGCCCACGCGTCCGTA 17
consensus_9217#3      GGTATGGTGTGAATAAAAATTGGAATATCTCATAATTTCCAGTGTCCCGTGCCGTGAAAA 77
                                                                           **     

consensus_9217#0      GCCGTTGACAATGCGTGCGTCAAGCTGCTGCAAGACCATGGCATTCAAGTTGACTACAAG 224
consensus_9217#2      GCCGTTGACAATGCGTGCGTCAAGCTGCTGCAAGACCATGGCATTCAAGTTGACTACAAG 224
consensus_9217#1      GCCGTTGACAATGCGTGCGTCAAGCTGCTGCAAGACCATGGCATTCAAGTTGACTACAAG 239
consensus_9217#4      CCCGAGGAAGTCGGTCGCCAAGCGCAGCCGCATGGT-ATG-CGTACAATATAATTA--AG 73
consensus_9217#3      TCCGATCAATCGACAGCCCATACGCCAGAGTATCGGAAAAGTGTGCGGAACCAACATCGA 137
                       ***   *         *     **    * *     *     * *      *  *    

consensus_9217#0      CTGAAGCTGTCACAGG---ATGAGCTGATTAAGGAGGT-TAAGAATTATGATGCTCTCAT 280
consensus_9217#2      CTGAAGCTGTCACAGG---ATGAGCTGATTAAGGAGGT-TAAGAATTATGATGCTCTCAT 280
consensus_9217#1      CTGAAGCTGTCACAGG---ATGAGCTGATTAAGGAGGT-TAAGAATTATGATGCTCTCAT 295
consensus_9217#4      TACCCGCTGACGACCG---AAACGATGATGAACAAGAT-CGAGGACAACAACACGCTCGT 129
consensus_9217#3      AGAGGTTTTACGTAAGTAAAAACGGGGCTTGAAAATTTGCACGCTCTGCGCTACGGCCAT 197
                             *  *    *   *   *  * *  *  *  *    *          *   * *

consensus_9217#0      CGTGCGGTCGGACACGAAAATTACG-GCCGAGATTTTGGACGCGGGCGCCGGCCGGGTGA 339
consensus_9217#2      CGTGCGGTCGGACACGAAAATTACG-GCCGAGATTTTGGACGCGGGCGCCGGCCGGGTGA 339
consensus_9217#1      CGTGCGGTCGGACACGAAAATTACG-GCCGAGATTTTGGACGCGGGCGCCGGCCGGGTGA 354
consensus_9217#4      CTTCCTGATTCACCTGCG---CGCC-AACAAGAACC---ACGTGAAGGCCG-TCGTGAGG 181
consensus_9217#3      TAGATTTTTTCTTCTTCGCTTCCCATATCGCCGCCATTGCAGTACATAACTAGCAGAGAG 257
                                             *    *            *       *   *      

consensus_9217#0      AGGCGGTCGGACGTGCCGGTGCCGGCGTGGACAACATCAACATCGAAGCAGCGACGCGAA 399
consensus_9217#2      AGGCGGTCGGACGTGCCGGTGCCGGCGTGGACAACATCAACATCGAAGCAGCGACGCGAA 399
consensus_9217#1      AGGCGGTCGGACGTGCCGGTGCCGGCGTGGACAACATCAACATCGAAGCAGCGACGCGAA 414
consensus_9217#4      AAGCTGTACGACGTGAAGGTGCTGAAGATCAACACGCTGGTG-CGACCGAACGGCAAGAA 240
consensus_9217#3      AAAGACAGAGACAGGCAGTTAGCGTATAAGCAAATAGGAAGGAAGAAAAGAGAGCACCAG 317
                      *        ***  *  * *   *         *          **        *   * 

consensus_9217#0      ACAACGTGCTGGTGCTGAACACTCCCGGCGGCAATTCGATTTCGGCGTGCGAGCTGACAT 459
consensus_9217#2      ACAACGTGCTGGTGCTGAACACTCCCGGAGGCAATTCGATTTCGGCGTGCGAGCTGACGT 459
consensus_9217#1      ACAACGTGCTGGTGCTGAACACTCCCGGCGGCAATTCGATTTCGGCGTGCGAGCTGACAT 474
consensus_9217#4      G-AAGGTGTACGTGCGGTTAACGCGCGACTACGATGCG--CTCGACATT---GCCAACAA 294
consensus_9217#3      ATCGAGAGTTT-TGCAGACGACG-ACGACGACGACGAG--CCCCACAGCAAAGCAGA--- 370
                           * *    *** *   **   **    * *   *    *  *      **  *   

consensus_9217#0      GCTT--CCTGAT-CGGGGCGCTGGCCCGCCCCATCTGCCCGGCGGCCACCAGCATGAAGG 516
consensus_9217#2      GCTTT-CCTGATTCGGGGCGCTGGCCCGCCCCATCTGCCCGGCGGCCACCAGCATGAAGG 518
consensus_9217#1      GCTT--CCTGAT-CGGGGCGCTGGCCCGCCCCATCTGCCCGGCGGCCACCAGCATGAAGG 531
consensus_9217#4      GATCGGCATCATCTAAAGCGCTAGTTTTGTACGGCTTTTTGGCGAACACTTCTCTCTCTT 354
consensus_9217#3      GTCCCATTTTATATCGATTGCGCACAAGTCACAGCT---TAGCATAAAACTATCCCGAAA 427
                      *       * **       **          *  **     **    *            

consensus_9217#0      AGGGCCGCTGGGACCGGAAGCTGTACTCCGG----CTCGG-AGCTGTACGGCAAGACGCT 571
consensus_9217#2      AGGGCCGCTGGGACCGGAAGCTGTACTCCGGG---CTCGG-AGCTGTACGGCAAGACGCT 574
consensus_9217#1      AGGGCCGCTGGGACCGGAAGCTGTACTCCGG----CTCGG-AGCTGTACGGCAAGACGCT 586
consensus_9217#4      TCTCCTACCACGGTGGAGAATAATGGGGAGGAGTGTTCAG-AGCGGAAAAAGGAGAGGAT 413
consensus_9217#3      GCAGCAGCAGCAGCCATTTTTGCCACAGTACCTGGTTTAGTAAACGAATCAAACGACCAA 487
                          *  *                            *  * *   * *      **    

consensus_9217#0      CGCCATCC--TCGGGCTCGGTCGCATC-GGGCGCGAGGTCGGCGTACGCATGAACGCGTT 628
consensus_9217#2      CGCCATCCC-TCGGGCTCGGTCGCATCCGGGCG--------------------------- 606
consensus_9217#1      CGCCATCC--TCGGGCTCGGTCGCATC-GGGCGCGAGGTCGGCGTACGCATGAACGCGTT 643
consensus_9217#4      -GCTGCGTC-GTGCGTATCGGAGTTTTTTTACACGGTGTGTG------------------ 453
consensus_9217#3      TAAAATGCAGTTCCAAGGCACAGCACAACCGCACCAGGGTGGCTTCCGCG-GACCGCGTC 546
                                            *        *                            

consensus_9217#0      CGGGATGCGCGTGATCGGGTTCGATCCGATCACGACGGCCGCGGAGGCGAAGGCGGCCGG 688
consensus_9217#2      ------------------------------------------------------------
consensus_9217#1      CGGGATGCGCGTGATCGGGTT--------------------------------------- 664
consensus_9217#4      ------------------------------------------------------------
consensus_9217#3      CGGA-------------------------------------------------------- 550
                                                                                  

consensus_9217#0      CATCGA 694
consensus_9217#2      ------
consensus_9217#1      ------
consensus_9217#4      ------
consensus_9217#3      ------
                            




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)