These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9231#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1382 fasta sequence [ACCCTGTTTCTCTTGCTGTGAGCGTCAGTAAATTAAAAAAAAAAAAACAAACCTATGGATCACAGCAGAGTGTGGTGCTGTCTGCTTAGCTTCATCGCAATGGCCGTGCTGTGTAGCGCATCCAGTGCAGCATGCACGCTCCAGGTCCCCGAAACCATGATAACGCGCCTGCTGCAAGCGGATCAGCCCGCCGGCGGCTGCGCA-CTGC-TTGGGATAGTCTACTGTCTCGGCTGGAGCAAATGCGCCACAATCTTACGGGCTGCAGCGAGCGCGAAACGACGAACCCGGCACCACCCGATGATACCCGCACCAACGCCCCCTGTCAGCTGCTGCTGGACGAGCTGCAACGGAAAGGGAATCAAACCCTGCTCCAGCTCGACAAAGAAATGGCCAGCAAAGCACTGTACGAGCGCATCGAGCTGGCCAAGGTGGCGCAGGACCAGGACCGCATCCAACAAGCGATCGAAACGATGCGCACCGAGCAGCGAAACCACCGGCAGCAGCTGCTACTCCTCTACCTCGATGCGGCGGACCTACGACGAGCCCTGCACCAGTATCAGCTGCTCGCCGCGCAGGGCGATCGCCACCTTCCCCAGCAGATAGTGAAGTTCGTGTACGCCGCCCCA-CGGCACGAGAACCGCCGGCTCGAGAACCTGCTCGACCTGGTGCGGCAGCTGCCGGCGCGCCAGGACCAGCGCACCCTGTACCAGCTGCTGCAGCCGGAAATTATGAAGCGCCCCACGCAGAACCAGAGCACCCTCGCCATGCTGACAGCGCTCGAGATGGGCCAGGTCGTGGAGGGGAACGGCGAGCTGAAAAAGCAGCAGGACGCGATGTACCAGCTGGTGCTGAAGCGCTGGATGTTTCTGTGCCTCGCCGGCCAGTATCGCGAGATAGTGCAGTTTGCCACGAAGCACCCGCGCCTGTTCGAGCAGATCGGGGCGAAGATCGCCACGATTCATCCGAAGTACTGGTGGAAGTTTAGCTTCACCCAGTTCGTGACGTACCCGA-ACCTGTTGCCGCTGCCCGAGCAGCGGCTGGAAGCGTTCCGCACCATCATGAAGCAGCTGAAGCAGCGCAATGGGAAGTTTTTCGCCGACCATCTGGCGAAGCTGGCGCCCCAGATCGAGCGCTGCGAGCAGTTTCTGCGGCAGCAGAAGAAGGAGCTGGAGTGGAAGGACGAGCTGGTGAAGCTGAAGGGACAGTTTGCCGACTTTGACCGGCGCAAGGACTACGCGTACTTTCTGAAAAACTCCAAGGCGCTCATTAAGAAGTATGCAGACGCTGCGAAGCAAAACAAAAACC-GACAGCCCGGGCGCCGCGGAGGTCTTGCCGGGCGCCGCTAATGAGGCTAATAATGTCCAGTCGAAAAAAAAAAATTG] [+] EMBL CNS095P7 [ACCCTGTTTCTCTTGCTGTGAGCGTCAGTAAATTAAAAAAAAAAAAACAAACCTATGGATCACAGCAGAGTGTGGTGCAGTCTGCTTAGCTTCATCGCAATGGCCGTGCTGTGTAGCGCATCCAGTGCAGCATGCA GCTCCAGGTCCCCGAAACCATGATAACGCGCCTGCTGCAAGCGGATCAGCCCGCCGGCGGCTGCGCA CTGC TTGGGATAGTCTACTGTCTCGGCTGGAGCAAATGCGCCACAATCTTACGGGCTGCAGCGAGCGCGAAACGACGAACCCGGCACCACCCGATGATACCCGCACCAACGCCCCCTGTCAGCTGCTGCTGGACGAGCTGCAACGGAAAGGGAATCAAACCCTGCTCCAGCTCGACAAAGAAATGGCCAGCAAAGCACTGTACGAGCGCATCGAGCTGGCCAAGGTGGCGCAGGACCAGGACCGCATCCAACAAGCGATCGAAACGATGCGCACCGAGCAGCGAAACCACCGGCAGCAGCTGCTACTCCTCTACCTCGATGCGGCGGACCTACGACGAGCCCTGCACCAGTATCAGCTGCTCGCCGCGCAGGGCGATCGCCACCTTCCCCAGCAGATAGTGAAGTTCGTGTACGCCGCCCCACCGGCACGAGAACCGCCGGCTCGAGAACCTGCTCGACCTGGTGCGGCA CTGCCGGCGCGCCAGGACCAGCGCACCCTGTACCAGCTGCTGCAGCCGGAAATTATGAAGCGCCCCACGCAGAACCAGAGCACCCTCGCCATGCTGACAGCGCTCGAGATGGGCCAGGTCGTGGAGGGGAACGGCGAGCTGAAAAAGCAGCAGGACGCGATGTACCAGCTGGTGCTGAAGCGCTGGATGTTTCTGTGCCTCGCCGGCCAGTATCGCGAGAAAGTGCAGTTTGCCACGAAGCACCCGCGCCTGTTCGAGCAGATCGGGGCGAAGATCGCCA ] [+] EMBL AGA297932 [ TTCTCTTGCTGTGAGCGTCNGTAAATT TAAAAAAAAAACAAACCTATGGATCACAGCAGAGTGTGGTGCTGTTTGCTTAGCTTCATCGCAATGGCCGTGCTGTGTAGCGCATCCAGTGCAGCATGCACGCTCCAGGTCCCCGAAACCATGATAACGCGCCTGCTGCAAGCGGATCAGCCCGCCGGCGGCTGCGCAGCTGC TTGGGATAGTCTACTGTCTCGGCTGGAGCAAATGCGCCACAATCTTACGGGCTGCAGCGAGCGCGAAACGACGAACCCGGCACCACCCGATGATACCCGCACCAA ] [+] EMBL BM608931 [ ccgCTTGCTGTGAGCGTCAGTTAATT AAAAAAACAAACCTATGGATCACAGCAGAGTGTGGTGCTGTCTGCTTAGCTTCATCGCAATGGCCGTGCTGTGTAGCGCATCCAGTGCAGCATGCACGCTCCAGGTCCCCGAAACCATGATAACGCGCCTGCTGCAAGCGGATCAGCCCGCCGGCGGCTGCGCAGCTGC TTGGGATAGTCTACTGTCTCGGCTGGAGCAAATGCGCCACAATCTTACGGGCTGCAGCGAGCGCGAAACGACGAACCCGGCACCACCCGATGATACCCGCACCAACGCCCCCTGTCAGCTGCTGCTGAACGAGCTGCAACGGAAAGGGAATCAAACCCTGCTCCAGCTCGACAAAGAAATGGCCAGCAAAGCACTGTACGAGCGCATCGAGCTGGCCAAGGTGGTGCAGGACCAGGACCGCATCCAACAAGCGATCGAAACGATGCGCACCGAGCAGCGAAACCACCGGCAGCAGCTGCTACTCCTCTACCTCGATGCGGCGGACCTACGACGAGCCCTGCACCAGTATAAGCTGCTC ] [+] EMBL BM620238 [ ccgCTTGCTGTGAGCGTCAGTTAATT AAAAAAACAAACCTATGGATCACAGCAGAGTGTGGTGCTGTCTGCTTAGCTTCATCGCAATGGCCGTGCTGTGTAGCGCATCCAGTGCAGCATGCACGCTCCAGGTCCCCGAAACCATGATAACGCGCCTGCTGCAAGCGGATCAGCCCGCCGGCGGCTGCGCAGCTGC TTGGGATAGTCTACTGTCTCGGCTGGAGCAAATGCGCCACAATCTTACGGGCTGCAGCGAGCGCGAAACGACGAACCCGGCACCACCCGATGATACCCGCACCAACGCCCCCTGTCAGCTGCTGCTGAACGAGCTGCAACGGAAAGGGAATCAAACCCTGCTCCAGCTCGACAAAGAAATGGCCAGCAAAGCACTGTACGAGCGCATCGAGCTGGCCAAGGTGGTGCAGGACCAGGACCGCATCCAACAAGCGATCGAAACGATGCGCACCGAGCAGCGAAACCACCGGCAGCAGCTGCTACTCCTCTACCTCGATGCGGCGGACCTACGACGAGCCCTGCACCAGTATAAGCTGCTCGTCGCGCAGGGCGATCGCCACCTTCCCCAGCAGATAGTGAAGTTCGTGTACGCCGCCCCA CGGCACGAGAACCGCCGGCTCGAGAACCTGCTCGACCTGGTGCGGCAGCTGCCGGCGTGCCAGGAC ] [+] EMBL CNS09EV0 [ TTGCTGTGAGCGTCAGTAAATTAAAAAAAAAAAAACAAACCTATGGATCACAGCAGAGTGTGGTGCTGTCTGCTTAGCTTCATCGCAATGGCCGTGCTGTGTAGCGCATCCAGTGCAGCATGCACGCTCCAGGTCCCCGAAACCATGATAACGCGCCTGCTGCAAGCGGATCAGCCCGCCGGCGGCTGCGCA CTGC TTGGGATAGTCTACTGTCTCGGCTGGAGCAAATGCGCCACAATCTTACGGGCTGCAGCGAGCGCGAAACGACGAACCCGGCACCACCCGATGATACCCGCACCAACGCCCCCTGTCAGCTGCTGCTGGACGAGCTGCAACGGAAAGGGAATCAAACCCTGCTCCAGCTCGACAAAGAAATGGCCAGCAAAGCACTGTACGAGCGCATCGAGCTGGCCAAGGTGGCGCAGGACCAGGACCGCATCCAACAAGCGATCGAAACGATGCGCACCGAGCAGCGAAACCACCGGCAGCAGCTGCTACTCCTCTACCTCGATGCGGCGGACCTACGACGAGCCCTGCACCAGTATCAGCTGCTCGCCGCGCAGGGCGATCGCCACCTTCCCCAGCAGATAGTGAAGTTCGTGTACGCCGCCCCA CGGCACGAGAACCGCCGGCTCGAGAACCTGCTCGACCTGGTGCGGCAGCTGCCGGCGCGCCAGGACCAGCGCACCCTGTACCAGCTGCTGCAGCCGGAAATTATGAAGCGCCCCACGCAGAACCAGAGCACCCTCGCCATGCTGACAGCGCTCGAGATGGGCCAGGTCGTGGAGGGGAACGGCGAGCTGAAAAAGCAGCAGGACGCGATGTACCAGCTGGTGCTGAAGCGCTGGATGTTTCTGTGCCTCGCCGGCCAGTATCGCGAGATAGTGCAGTTTGCCACGAAGCACCCGCGCCTGTTCGAGCAGATCGGGGCGAAGATCGCCACGATT ] [+] EMBL CNS09ILH [ GCTGTGAGCGTCAGTAAATTAAAAAAAAAAAAACAAACCTATGGATCACAGCAGAGTGTGGTGCTGTCTGCTTAGCTTCATCGCAATGGCCGTGCTGTGTAGCGCATCCAGTGCAGCATGC CGCTCCAGGTCCCCGAAACCATGATAACGCGCCTGCTGCAAGCGGATCAGCCCGCCGGCGGCTGCGCA CTGCTTTGGGATAGTCTACTGTCTCGGCTGGAGCAAATGCGCCACAATCTTACGGGCTGCAGCGAGCGCGAAACGACGAACCCGGCACCACCCGATGATACCCGCACCAACGCCCCCTGTCAGCTGCTGCTGGACGAGCTGCAACGGAAAGGGAATCAAACCCTGCTCCAGCTCGACAAAGAAATGGCCAGCAAAGCACTGTACGAGCGCATCGAGCTGGCCAAGGTGGCGCAGGACCAGGACCGCATCCAACAAGCGATCGAAACGATGCGCACCGAGCAGCGAAACCACCGGCAGCAGCTGCTACTCCTCTACCTCGATGCGGCGGACCTACGACGAGCCCTGCACCAGTATCAGCTGCTCGCCGCGCAGGGCGATCGCCACCTTCCCCAGCAGATAGTGAAGTTCGTGTACGCCGCCCCA CGGCACGAGAACCGCCGGCTCGAGAACCTGCTCGACCTGGTGCGGCA CTGCCGGCGCGCCAGGACCAGCGCACCCTGTACCAGCTGCTGCAGCCGGAAATTATGAAGCGCCCCACGCAGAACCAGAGCACCCTCGCCATGCTGACAGCGCTCGAGATGGGCCAGGTCGTGGAGGGGAACGGCGAGCTGAAAAAGCAGCAGGACGCGATTTACCAGCTGGTGCTGAAGCGCTG ] [+] EMBL CNS08TBX [ TGAGCGTCAGTAAATTAAAAAAAAAAAAACAAACCTATGGATCACAGCAGAGTGTGGTGCTGTCTGCTTAGCTTCATCGCAATGGCCGTGCTGTGTAGCGCATCCAGTGCAGCATGCA GCTCCAGGTCCCCGAAACCATGATAACGCGCCTGCTGCAAGCGGATCAGCCCGCCGGCGGCTGCGCA CTGC TTGGGATAGTCTACTGTCTCGGCTGGAGCAAATGCGCCACAATCTTACGGGCTGCAGCGAGCGCGAAACGACGAACCCGGCACCACCCGATGATACCCGCACCAACGCCCCCTGTCAGCTGCTGCTGGACGAGCTGCAACGGAAAGGGAATCAAACCCTGCTCCAGCTCGACAAAGAAATGGCCAGCAAAGCACTGTACGAGCGCATCGAGCTGGCCAAGGTGGCGCAGGACCAGGACCGCATCCAACAAGCGATCGAAACGATGCGCACCGAGCAGCGAAACCACCGGCAGCAGCTGCTACTCCTCTACCTCGATGCGGCGGACCTACGACGAGCCCTGCACCAGTATCAGCTGCTCGCCGCGCAGGGCGATCGCCACCTTCCCTTTTTGATAGTGAAGTTCGTGTACGCCGCCCCA CGGCACGAGAACCGCCGGCTCG ] [+] EMBL CNS09L8Q [ TGCAACGGAAAGGGAATCAAACCCTGCTCCAGCTCGACAAAGAAATGGCCAGCAAAGCACTGTACGAGCGCATCGAGCTGGCCAAGGTGGCGCAGGACCAGGACCGCATCCAACAAGCGATCGAAACGATGCGCACCGAGCAGCGAAACCACCGGCAGCAGCTGCTACTCCTCTACCTCGATGC ] [+] EMBL AF457555 [ GCGATCGAAACGATGCGCACCGAGCAGCGAAACCACCGGCAGCAGCTGCTACTCCTCTACCTCGATGCGGCGGACCTACGACGAGCCCTGCACCAGTATCAGCTGCTCGCCGCGCAGGGCGATCGCCACCTTCCCCAGCAGATAGTGAAGTTCGTGTACGCCGCCCCA CGGCACGAGAACCGCCGGCTCGAGAACCTGCTCGACCTGGTGCGGCAGCTGCCGGCGCGCCAGGACCAGCGCACCCTGTACCAGCTGCTGCAGCCGGAAATTATGAAGCGCCCCGCGCAGAACCAGAGCACCCTCGCCATGCTGACAGCGCTCGAGATGGGCCAGGTCGTGGAGGGGAACGGCGAGCTGAAAAAGCAGCAGGACGCGATGTACCAGCTGGTGCTGAAGCGCTGGATGTTTCTGTGCCTCGCCGGCCAGTATCGCGAGATAGTGCAGTTTGCCACGAAGCACCCGCGCCTGTTCGAGTAGATCGGGGCGAAGATCGCCACGATTCATCCGAAGTACTGGTGGAAGTTTAGCTTCACCCAGTTCGCGACGTACCCGA ACCTGTTGCCGCTGCCCGAGCAGCGGCTGGAAGCGTTCCGCACCATCATGAAGCAGCTGAAGCAGCGCAATGGGAAGTTTTTCGCCGACCATCTGGCGAAGCTGGCGCCCCAGATCGAGCGCTGCGAGCAGTTTCTGCGGCAGCAGAAGAAGGAGCTGGAGTGGAAGGACGAGCTGGTGAAGCTGAAGGGACAGTTTGCCGACTTTGACCGGCGCAAGGACTACGCGTACTATCTGAAAAACTCCAAGGCGCTCATTAAGAAGTATGCAGACGCTGCGAAGCAAAACAAAAACC GACAGCCCGGGCGCCGCGGAGGTCTTGCCGGGCGCCGCTAATGAGGCTAATAATGTCCAGTCGAAAAAAAAAAA ] [-] EMBL CNS09EV1 [ ACCACCGGCAGCAGCTGCTACTCCTCTACCTCGATGCGGCGGACCTACGACGAGCCCTGCACCAGTTTCAGCTGCTCGCCGCGCAGGGCGATCGCCACCTTCCCCAGCAGATAGTGAAGTTCGTGTACGCCCCCCCA CGGCACGAGAACCGCCGGCTCGAGAACCTGCTCGACCTGGTGCGGCAGCTGCCGGCGCGCCAGGACCAGCGCACCCTGTACCAGCTGCTGCAGCCGGAAATTTTGAAGCGCCCCACGCAGAACCAGAGCACCCTCGCCATGCTGACAGCGCTCGAGATGGGCCAGGTCGTGGAGGGGAACGGCGAGCTGAAAAAGCAGCAGGACGCGATGTACCAGCTGGTGCTGAAGCGCTGGATGTTTTTGTGCCTCGCCGGCCAGTATCGCGAGATAGTGCAGTTTGCCACGAAGCACCCGCGCCTGTTCGAGCAGATCGGGGCGAAGATCGCCACGATTCATCCGAAGTACTGGTGGAAGTTTAGCTCCACCCAGTTCGTGACGTACCCGA ACCTGTTGCCGCTGCCCGAGCAGCGGCTGGAAGCGTTCCGCACCATCATGAAGCAGCTGAAGCAGCGCAATGGGAAGTTTTTCGCCGACCCTCTGGCGAAGCTGGCGCCCCAGATCGAGCGCTGCGAGCAGTTTCTGCGGCAGCAGAAGAAGGAGCTGGAGTGGAAGGACGAGCTGGTGAAGCTGAAGGGACAGTTTGCCGACTTTGACCGGCGCAAGGACTACGCGTACTTTCTGAAAAACTCCAAGGCGCTCATTAAGAAGTATGCAGACGCTGCGAAGCAAAACAAAAACC GACAGCCCGGGCGCCGCGGAGGTCTTGCCGGGCGCCGCTAATGAGGCTAATAATGTCCAGTCGAATAAATGCAATTG] [-] EMBL CNS095P8 [ CTTCCCCAGCAGATAGTGAAGTTCGTGTACGCCGCCCCA CGGCACGAGAACCGCCGGCTCGAGAACCTGCTCGACCTGGTGCGGCAGCTGCCGGCGCGCCAGGACCAGCGCACCCTGTACCAGCTGCTGCAGCCGGAAATTTTGAAGCGCCCCACGCAGAACCAGAGCACCCTCGCCATGCTGACAGCGCTCGAGATGGGCCAGGTCGTGGAGGGGAACGGCGAGCTGAAAAAGCAGCAGGACGCGATGTACCAGCTGGTGCTGAAGCGCTGGATGTTTTTGTGCCTCGCCGGCCAGTATCGCGAGATAGTGCAGTTTGCCACGAAGCACCCGCGCCTTTTCGAGCAGATCGGGGCGAAGATCGCCACGATTCATCCGAAGTACTGGTGGAAGTTTAGCTTCACCCAGTTCGTGACGTACCCGAGACCTGTTGCCGCTGCCCGAGCAGCGGCTGGAAGCGTTCCGCACCATCATGAAGCAGCTGAAGCAGCGCAATGGGAAGTTTTTCGCCGACCTTCTGGCGAAGCTGGCGCCCCAGATCGAGCGCTGCGAGCAGTTTCTGCGGCAGCAGAAGAAGGAGCTGGAGTGGAAGGACGAGCTGGTGAAGCTGAAGGGACAGTTTGCCGACTTTGACCGGCGCAAGGACTACGCGTACTTTCTGAAAAACTCCAAGGCGCTCATTAAGAAGTATGCAGACGCTGCGAAGCAAAAAAAAAACCGGACAGCCCGGGCTCCGCGGAGGTTTTGCCGGGCGCCGCTAATGAGG ] [-] EMBL CNS09ILI [ CCTGGTGCGGCAGCTGCCGGCGCGCCAGGACCAGCGCACCCTGTTCCAGCTGCTGCAGCCGGAAATTATGAAGCGCCCCACGCAGAACCAGAGCACCCTCGCCATGCTGACAGCGCTCGAGATGGGCCAGGTCGTGGAGGGGAACGGCGAGCTGAAAAAGCAGCAGGACGCGATGTACCAGCTGGTGCTGAAGCGCTGGATGTTTTTGTGCCTCGCCGGCCAGTATCGCGAGATAGTGCAGTTTGCCACGAAGCACCCGCGCCTGTTCGAGCAGATCGGGGCGAAGATCGCCACGATTCATCCGAAGTACTGGTGGAAGTTTAGCTTCACCCAGTTCGTGACGTACCCGA ACCTGTTG CGCTGCCCGAGCAGCGGCTGGAAGCGTTCCGCACCATCATGAAGCAGCTGAAGCAGCGCAATGGGAAGTTTTTCGCCGACCATCTGGC ] consensusID : consensus_9231#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 668 fasta sequence [GTTCGTGTACGCCGCCCCACGGCACGAGAACCGCCGGCTCGAGAACCTGCTCGACCTGGTGCGGCAGCTGCCGGCGCAAAAAGAACCAGCGCACCCTGTACCCAGCTGAAAAAGCAGCAGGACGCGATGTACCAGCTGGTGGTGAAGCGCTGGATGTTTCTGTGCCTCGCCGGCCAGTATCGCGAGATAGTGCAGTTTGCCACGAAGCACCCGCGCCTGTTCGAGCAGATCGGGGCGAAGATCGCCACGATTCATCCGAAGTACTGGTGGAAGTTTAGCTTCACCCAGTTCGTGACGTACCCGAACCTGTTGCGCTGCCCGAGCAGCGGCTGGAAGCGTTCCGCACCATCATGAAGCAGCTGAAGCAGCGCAATGGGAAGTTTTTCGCCGACCATCTGGCGAAGCTGGCGCCCCAGATCGAGCGCTGCGAGCAGTTTCTGCGGCAGCAGAAGAAGGAGCTGGAGTGGAAGGACGAGCTGGTGAAGCTGAAGGGACAGTTTGCCGACTTTGACCGGCGCAAGGACTACGCGTACTATCTGAAAAACTCCAAGGCGCTCATTAAGAAGTATGCAGACGCTGCGAAGCAAAACAAAAACCGACAGCCCGGGCGCCGCGGAGGCCTTGCCGGGCGCCGCTAATGAGGCTAATAATGTCCAGTCGAATAAATG] [-] EMBL CNS08TBY [GTTCGTGTACGCCGCCCCACGGCACGAGAACCGCCGGCTCGAGAACCTGCTCGACCTGGTGCGGCAGCTGCCGGCGCAAAAAGAACCAGCGCACCCTGTACCCAGCTGAAAAAGCAGCAGGACGCGATGTACCAGCTGGTGGTGAAGCGCTGGATGTTTCTGTGCCTCGCCGGCCAGTATCGCGAGATAGTGCAGTTTGCCACGAAGCACCCGCGCCTGTTCGAGCAGATCGGGGCGAAGATCGCCACGATTCATCCGAAGTACTGGTGGAAGTTTAGCTTCACCCAGTTCGTGACGTACCCGAACCTGTTGCGCTGCCCGAGCAGCGGCTGGAAGCGTTCCGCACCATCATGAAGCAGCTGAAGCAGCGCAATGGGAAGTTTTTCGCCGACCATCTGGCGAAGCTGGCGCCCCAGATCGAGCGCTGCGAGCAGTTTCTGCGGCAGCAGAAGAAGGAGCTGGAGTGGAAGGACGAGCTGGTGAAGCTGAAGGGACAGTTTGCCGACTTTGACCGGCGCAAGGACTACGCGTACTATCTGAAAAACTCCAAGGCGCTCATTAAGAAGTATGCAGACGCTGCGAAGCAAAACAAAAACCGACAGCCCGGGCGCCGCGGAGGCCTTGCCGGGCGCCGCTAATGAGGCTAATAATGTCCAGTCGAATAAATG] consensusID : consensus_9231#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 555 fasta sequence [GAGCAGCGAAACCACCGGCAGCAGCTGCTACTCCTCTACCTCGATGCGGCGGACCTACGACGAGCCCTGCACCAGTATCAGCTGCTCGCCGCGCAGGGCGATCGCCACCTTCCCCAGCAGATAGTGAAGTTCGTGTACGCCGCCCCACGGCACGAGAACCGCCGGCTCGAGAACCTGCTCGACCTGGTGCGGCAGCTGCCGGCGCGCCAGGACCAGCGCACCCTGTACCAGCTGCTGCAGCCGGAAATTATGAAGCGCCCCGCGCAGAACCAGAGCACCCTCGCCATGCTGACAGCGCTCGAGATGGGCCAGGTCGTGGAGGGGAACGGCGAGCTGAAAAAGCAGCAGGACGCGATGTACCAGCTGGTGCTGAAGCGCTGGATGTTTCTNGTGCCTCGNCCCGGCCACNTATNNNCGAGATAANNNCACGTTTNGCCACGAAAAGCACCCCGCNGCCTGNTTCCCAGTTATATCTNGGGCCGAAGATTACCCACGATTTCATCCCGAANGTACTGGTGGGAAGTTTAACTTACCCCATTTCCCNANNTACCCNNA] [+] EMBL CF542004 [GAGCAGCGAAACCACCGGCAGCAGCTGCTACTCCTCTACCTCGATGCGGCGGACCTACGACGAGCCCTGCACCAGTATCAGCTGCTCGCCGCGCAGGGCGATCGCCACCTTCCCCAGCAGATAGTGAAGTTCGTGTACGCCGCCCCACGGCACGAGAACCGCCGGCTCGAGAACCTGCTCGACCTGGTGCGGCAGCTGCCGGCGCGCCAGGACCAGCGCACCCTGTACCAGCTGCTGCAGCCGGAAATTATGAAGCGCCCCGCGCAGAACCAGAGCACCCTCGCCATGCTGACAGCGCTCGAGATGGGCCAGGTCGTGGAGGGGAACGGCGAGCTGAAAAAGCAGCAGGACGCGATGTACCAGCTGGTGCTGAAGCGCTGGATGTTTCTNGTGCCTCGNCCCGGCCACNTATNNNCGAGATAANNNCACGTTTNGCCACGAAAAGCACCCCGCNGCCTGNTTCCCAGTTATATCTNGGGCCGAAGATTACCCACGATTTCATCCCGAANGTACTGGTGGGAAGTTTAACTTACCCCATTTCCCNANNTACCCNNA] consensusID : consensus_9231#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 494 fasta sequence [CCCCGAGGTTNNAGCGTCAGTTAATTAAAAAACAAACTATGGATCACAGCAGAGTGTGGTGCTGTCTGCTTAGCTTCATCGCAATGGCCGTGCTGTGTAGCGCATCCAGTGCAGCATGCACGCTCCAGGTCCCCGAAACCATGATAACGCGCCTGCTGCAAGCGGATCAGCCCGCCGGCGGCTGCGCAGCTGCTTGGGATAGTCTACTGTCTCGGCTGGAGCAAATGCGCCACAATCTTACGGGCTGCAGCGAGCGCGAAACGACGAACCCGGCACCACCCGATGATACCCGCACCAACGCCCCCTGTCAGCTGCTGCTGAACGAGCTGCAACGGAAAGGGAATCAAACCCTGCTCCAGCTCGACAAAGAAATGGCCAGCAAAGCACTGTACGAGCGCATCGAGCTGGCCAAGGGTGGTGCAGGACCAGGACCGCATCCAACAAGCGATCGAAACGATGCGCACCGAGCAGCGAAACCACCGGCAGCAGCTGCT] [+] EMBL AL933473 [CCCCGAGGTTNNAGCGTCAGTTAATTAAAAAACAAACTATGGATCACAGCAGAGTGTGGTGCTGTCTGCTTAGCTTCATCGCAATGGCCGTGCTGTGTAGCGCATCCAGTGCAGCATGCACGCTCCAGGTCCCCGAAACCATGATAACGCGCCTGCTGCAAGCGGATCAGCCCGCCGGCGGCTGCGCAGCTGCTTGGGATAGTCTACTGTCTCGGCTGGAGCAAATGCGCCACAATCTTACGGGCTGCAGCGAGCGCGAAACGACGAACCCGGCACCACCCGATGATACCCGCACCAACGCCCCCTGTCAGCTGCTGCTGAACGAGCTGCAACGGAAAGGGAATCAAACCCTGCTCCAGCTCGACAAAGAAATGGCCAGCAAAGCACTGTACGAGCGCATCGAGCTGGCCAAGGGTGGTGCAGGACCAGGACCGCATCCAACAAGCGATCGAAACGATGCGCACCGAGCAGCGAAACCACCGGCAGCAGCTGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9231#0 ------------------------------------------------------------ consensus_9231#3 ------------------------------------------------------------ consensus_9231#1 GTTCGTGTACGCCGCCCCACGGCACGAGAACCGCCGGCTCGAGAACCTGCTCGACCTGGT 60 consensus_9231#2 ----------------------------------------------------GAGCAGCG 8 consensus_9231#0 ----------------ACCCTGTTTCTCTTGCTGTGAGCGTC-AGTAAATTAAAAAAAAA 43 consensus_9231#3 ------------------------CCCCGAGGTTNNAGCGTC-AGTTAATTAAAAAACAA 35 consensus_9231#1 GCGGCAGCTGCCGGCGCAAAAAGAACCAGCGCACCCTGTACCCAGCTGAAAAAGCAGCAG 120 consensus_9231#2 AAACCACCGGCAGCAGCTGCTACTCCTCTACCTCGATGCGGCGGACCTACGACGAGCCCT 68 * * * * * consensus_9231#0 AAAACAAACCTATGGATCACAGCAGAGTGTGGTGCTGTCTGCTTAGCTTCATCGCAA--T 101 consensus_9231#3 A--------CTATGGATCACAGCAGAGTGTGGTGCTGTCTGCTTAGCTTCATCGCAA--T 85 consensus_9231#1 GACG-----CGATGTACCAGCTGGTGGTGAAGCGCTGGATGTTTCTGTGCCTCGCCGGCC 175 consensus_9231#2 G---------CACCAGTATCAGCTGCTCGCCGCGCAGGGCGATCGCCACCTTCCCCAGCA 119 * * * ** * * * * ** * consensus_9231#0 GGCCGTGCTGTGTAGCGCA---TCCAGTGCAGCATGCACGCTC-------CAGGTCC--- 148 consensus_9231#3 GGCCGTGCTGTGTAGCGCA---TCCAGTGCAGCATGCACGCTC-------CAGGTCC--- 132 consensus_9231#1 AGTATCGCGAGATAGTGCAGTTTGCCACGAAGCACCCGCGCCTGTTCGAGCAGATCGGGG 235 consensus_9231#2 GATAGTGAAGT-TCGTGTACGCCGCCCCACGGCACGAGAACCGCCGGCTCGAGAACCTGC 178 * * * * * * *** * ** * consensus_9231#0 CCGAAACCATGATAACGCGCCTG-----CTGCAAGCGGATCAGCC---CGCCGGCGGCTG 200 consensus_9231#3 CCGAAACCATGATAACGCGCCTG-----CTGCAAGCGGATCAGCC---CGCCGGCGGCTG 184 consensus_9231#1 CGAAGATCGCCACGATTCATCCGAAGTACTGGTGGAAGTTTAGCTTCACCCAGTTCGTGA 295 consensus_9231#2 TCGACCTGGTGCGGCAGCTGCCGGCGCGCCAGGACCAGCGCACCCT-GTACCAGCTGCTG 237 * * * * * * * * * * consensus_9231#0 C-GCA-CTGCTTGGGATAGTCTACTGTCTCGGCTGGAGCAAATGCGCCACAATCTTACGG 258 consensus_9231#3 C-GCAGCTGCTTGGGATAGTCTACTGTCTCGGCTGGAGCAAATGCGCCACAATCTTACGG 243 consensus_9231#1 C-GTACCCGAACCTGTTGCGCTGCCCGAGCAGCGGCTGGAAGCGTTCCGCACCATCATGA 354 consensus_9231#2 CAGCCGGAAATTATGAAGCGCCCCGCGCAGAACCAGAGCACCCTCGCCATG--CTGACAG 295 * * * * * * * * ** * * consensus_9231#0 -GCTGCAGCGAGCGCGAAACGACGAACCCGGCACCACCCGATGATACCCGCACCAACGCC 317 consensus_9231#3 -GCTGCAGCGAGCGCGAAACGACGAACCCGGCACCACCCGATGATACCCGCACCAACGCC 302 consensus_9231#1 AGCAGCTGAAGCAGCGCAATGGGAAGTTTTTCGCCGACCATC--TGGCGAAGCTGGCGCC 412 consensus_9231#2 CGCTCGAGATGGGCCAGGTCGTGGAGGGGAACGGCGAGCTGAAAAAGCAGCAG-GACGCG 354 ** * * * * * * * * *** consensus_9231#0 CCCTGTCAGCTGCTGCTGGACGAGCTGCAACGGAAAGGGAATCAAACCCTGCTCCAGCTC 377 consensus_9231#3 CCCTGTCAGCTGCTGCTGAACGAGCTGCAACGGAAAGGGAATCAAACCCTGCTCCAGCTC 362 consensus_9231#1 CCAGATCGAGCGCTGC-GAGC-AGTTTCTGCGGCAGCAGAAGAAGGAGCTGGAGTGGAAG 470 consensus_9231#2 ATGTACCAGCTGGTGCTGAA-GCGCTGGATGTTTCTNGTGCCTCGNCCCGGCCACNTATN 413 * * *** * * * * * consensus_9231#0 GACAAAGAAATGGCCAGCAAAGC-ACTGTACGAGCGCATCGAGCTGGCCAAGG-TGGCGC 435 consensus_9231#3 GACAAAGAAATGGCCAGCAAAGC-ACTGTACGAGCGCATCGAGCTGGCCAAGGGTGGTGC 421 consensus_9231#1 GACGAGCTGGTGAAGCTGAAGGG-ACAGTTTGCCGACTTTGACCGGCGCAAGGACTACGC 529 consensus_9231#2 NNCGAGATAANNNCACGTTTNGCCACGAAAAGCACCCCGCNGCCTGNTTCCCAGTTATAT 473 * * * ** * * * * consensus_9231#0 AGG--ACCAGGACCGCATCCAACAAGCGATCGAAACG-ATGCG--CACCGAGCAGCGAAA 490 consensus_9231#3 AGG--ACCAGGACCGCATCCAACAAGCGATCGAAACG-ATGCG--CACCGAGCAGCGAAA 476 consensus_9231#1 GTACTATCTGAAAAACTCCAAGGCGCTCATTAAGAAGTATGCAGACGCTGCGAAGCAAAA 589 consensus_9231#2 CTNG-GGCCGAAGATTACCCACGATTTCATCCCGAAN-GTACT---GGTGGGAAGTTTAA 528 * * * * * ** * * * * * ** ** consensus_9231#0 CCA---CCGGCAGC--AGCTGCTACTCCTCTACCTCGATGCGGCGGACCTACGACGAGCC 545 consensus_9231#3 CCA---CCGGCAGC--AGCTGCT------------------------------------- 494 consensus_9231#1 CAAAAACCGACAGCCCGGGCGCCGCGGAGGCCTTGCCGGGCGCCGCTAATGAGGCTAATA 649 consensus_9231#2 CTTACCCCATTTCCCNANNTACCCNNA--------------------------------- 555 * ** * * consensus_9231#0 CTGCACCAGTATCAGCTGCTCGCCGCGCAGGGCGATCGCCACCTTCCCCAGCAGATAGTG 605 consensus_9231#3 ------------------------------------------------------------ consensus_9231#1 ATGTCCAGTCGAATAAATG----------------------------------------- 668 consensus_9231#2 ------------------------------------------------------------ consensus_9231#0 AAGTTCGTGTACGCCGCCCCACGGCACGAGAACCGCCGGCTCGAGAACCTGCTCGACCTG 665 consensus_9231#3 ------------------------------------------------------------ consensus_9231#1 ------------------------------------------------------------ consensus_9231#2 ------------------------------------------------------------ consensus_9231#0 GTGCGGCAGCTGCCGGCGCGCCAGGACCAGCGCACCCTGTACCAGCTGCTGCAGCCGGAA 725 consensus_9231#3 ------------------------------------------------------------ consensus_9231#1 ------------------------------------------------------------ consensus_9231#2 ------------------------------------------------------------ consensus_9231#0 ATTATGAAGCGCCCCACGCAGAACCAGAGCACCCTCGCCATGCTGACAGCGCTCGAGATG 785 consensus_9231#3 ------------------------------------------------------------ consensus_9231#1 ------------------------------------------------------------ consensus_9231#2 ------------------------------------------------------------ consensus_9231#0 GGCCAGGTCGTGGAGGGGAACGGCGAGCTGAAAAAGCAGCAGGACGCGATGTACCAGCTG 845 consensus_9231#3 ------------------------------------------------------------ consensus_9231#1 ------------------------------------------------------------ consensus_9231#2 ------------------------------------------------------------ consensus_9231#0 GTGCTGAAGCGCTGGATGTTTCTGTGCCTCGCCGGCCAGTATCGCGAGATAGTGCAGTTT 905 consensus_9231#3 ------------------------------------------------------------ consensus_9231#1 ------------------------------------------------------------ consensus_9231#2 ------------------------------------------------------------ consensus_9231#0 GCCACGAAGCACCCGCGCCTGTTCGAGCAGATCGGGGCGAAGATCGCCACGATTCATCCG 965 consensus_9231#3 ------------------------------------------------------------ consensus_9231#1 ------------------------------------------------------------ consensus_9231#2 ------------------------------------------------------------ consensus_9231#0 AAGTACTGGTGGAAGTTTAGCTTCACCCAGTTCGTGACGTACCCGAACCTGTTGCCGCTG 1025 consensus_9231#3 ------------------------------------------------------------ consensus_9231#1 ------------------------------------------------------------ consensus_9231#2 ------------------------------------------------------------ consensus_9231#0 CCCGAGCAGCGGCTGGAAGCGTTCCGCACCATCATGAAGCAGCTGAAGCAGCGCAATGGG 1085 consensus_9231#3 ------------------------------------------------------------ consensus_9231#1 ------------------------------------------------------------ consensus_9231#2 ------------------------------------------------------------ consensus_9231#0 AAGTTTTTCGCCGACCATCTGGCGAAGCTGGCGCCCCAGATCGAGCGCTGCGAGCAGTTT 1145 consensus_9231#3 ------------------------------------------------------------ consensus_9231#1 ------------------------------------------------------------ consensus_9231#2 ------------------------------------------------------------ consensus_9231#0 CTGCGGCAGCAGAAGAAGGAGCTGGAGTGGAAGGACGAGCTGGTGAAGCTGAAGGGACAG 1205 consensus_9231#3 ------------------------------------------------------------ consensus_9231#1 ------------------------------------------------------------ consensus_9231#2 ------------------------------------------------------------ consensus_9231#0 TTTGCCGACTTTGACCGGCGCAAGGACTACGCGTACTTTCTGAAAAACTCCAAGGCGCTC 1265 consensus_9231#3 ------------------------------------------------------------ consensus_9231#1 ------------------------------------------------------------ consensus_9231#2 ------------------------------------------------------------ consensus_9231#0 ATTAAGAAGTATGCAGACGCTGCGAAGCAAAACAAAAACCGACAGCCCGGGCGCCGCGGA 1325 consensus_9231#3 ------------------------------------------------------------ consensus_9231#1 ------------------------------------------------------------ consensus_9231#2 ------------------------------------------------------------ consensus_9231#0 GGTCTTGCCGGGCGCCGCTAATGAGGCTAATAATGTCCAGTCGAAAAAAAAAAATTG 1382 consensus_9231#3 --------------------------------------------------------- consensus_9231#1 --------------------------------------------------------- consensus_9231#2 --------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||