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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9235#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1709 fasta sequence
[CCGCCACTTTCAGGTTGTCAATGGGACCGGTCCGTCC-CGTAAGTGGAGACGTGGAAAACAGCTGCCCCCGTGGTGTAGGAAAAGTAGCACCAGTGCTCAGCTATCGAACCCCCGAATGTGTGTTTTCCGTCGTGAAAACGTGAACAGTGAATAAACCTAAACGCGTCACGGTGGTGCTTCCTTGCGAGTGAGTGTGTGTCGGCGGGTTTTGTGTTCGAGAGATGGCGGAGAAACGACGTGCCAAGAAGCGAAAGGATGAATACAGCGGTCCCGGAGGCGCAGAACAGGAGATTGAAAAAGCTTCCAAGGATGAGTACAAGGTGGCAAAATGGCTCAAATCGAACGTACCGACGAAAAAGACCAAATTTCTGAATCACAATGTGGAATACTTTTCTGCCATCAAAGCAATCGATGCACTGCTTGCGTCAAAGTTTGCCCAGGGTGACAACTGTCTCTTTCCGCACCGGCAGGCCGTGATTGATTTTATGGGCGATATGCTGTACCACAAGTTTTTCCATCGCGCCCGAAAGGTCCCGGTCAGCGAGCAGGAGCTGCGCGGGAAGAACAGCAAAAAGGCAGCCGCAGAGGCCTTGGTGACGGCCAGCTCGGCTAAGGATGGCTCCAAACAAACGGCGACAAAGGAGGAACGGGCAACCGACGCGGAAAGTAGCCACGCGGAGGGCAGCAAGGCGGT-GGCGGAAGCGGTAGCGGGAAAACGAAAGCGCAAGATCCGTCTAGAGATGCACCCGGAGCAGCTGTTTATC-GATGGGCACGAGGCGTACGTCTGGCTGTACGATCCGATCCCGATGCATTACTGGATCTTTGGCGCACTGCTGGTGGTGGGCGCGATCGTCATCTGTCTATTCCCGCTGTGGCCACCGCTGCTGCGAAAGGGGGTGTACTAT-CTGAGCATAGC-GGC-GGCCGGCT--TTTTGG-TGTTTAT-TCTCGGCCTGGTCGTGTTGCGGTGCATCCTGT-TCTGT-CTGGGTGTGGGTGGTGACC-GGTGGAAAGCACCACTTCTGGCTGCTACCGAATCTGACGGAAGATGTCGGCTTTTTGCCTCCTTCTGGCCACTGTACAATCATGAATACAAGGACTGGTCAGAGTGGCACCTGAGAAGGGTAGCAAGAAGACAAAAAAACGAAAACGCGACAAGGACATGTGGCGGCTGAAGAGGAGAGTACCACCACCGGCAATATCCCACCGACTGATCGACTGAGTGTTGAANGGACGCGTGACACTGACGGAAAGCGGCAACATCTTCANCANGCGCCNGCAGACCGNNGGGTTAAGGCATNGNGGAAGCCTAANCAAGCAGCATGCAGCAGCCGCAGGAATCTTCACCCAGTGTNCTGTCCCACCGGTNACAATTGGCGAGATCATCGACGAAGGAAGCAAAAATCCGGNAAANAACCGTCGGACCACGTGATCGGAANGGTACGCANGCGCTCANCACTCCACGGGGAAAGGACNCNTNNNANACATTGGTCNAAGTCCAGGATTAAGNTGGAAAAACATCNCCNTAACAGCCANAAAACGTTTAATTCGAGANNNGCCGGNTATACATTACCANNTNACCCCCAATTCACAGATTGGCAGACAACACAGTNGTACCCGNTGACGTGGNATCGCGNAAAAACACAACTANNTCNAGTNACAAATTGGAGCAAGCGNGCNNAAANATAACACCACCCACAAAATTTANNGGCACACAC]
[+] EMBL BM587910 [CCGCCACTTTCAGGTTGTCAATGGGAAGAGTCCGTCC CGTAAGTGGAGACGTGGAAAACAGCTGCCCCCGTGGTGTAGGAAAAGTAGCACCAGTGCTCAGCTATCGAACCCCCGAATGTGTGTTTTCCGTCGTGAAAACGTGAACAGTGAATAAACCTAAACGCGTCACGGTGGTGCTTCCTTGCGAGTGAGTGTGTGTCGGCGGGTTTTGTGTTCGAGAGATGGCGGAGAAACGACGTGCCAAGAAGCGAAAGGATGAATACAGCGGTCCCGGAGGCGCAGAACAGGAGATTGAAAAAGCTTCCAAGGATGAGTACAAGGTGGCAAAATGGCTCAAATCGAACGTACCGACGAAAAAGACCAAATTTCTGAATCACAATGTGGAATACTTTTCTGCCATCAAAGCAATCGATGCACTGCTTGCGTCAAAGTTTGCCCAGGGTGACAACTGTCTCTTTCCGCACCGGCAGGCCGTGATTGATTTTATGGGCGATATGCTGTACCACAAGTTTTTCCATCGCGCCCGAAAGGTCCCGGTCAGCGAGCAGGAGCTGCGCGGGAAGAACAGCAAAAAGGCAGCCGCAGAGGCCTTGGTGACGGCCAGCTCGGCTAAGGATGGCTCCAAACAAACGGCGACAAAGGAGGAACGGGCAACCGACGCGGAAAGTAGCCACGCGGAGGGCAGCAAGGCGGT ]
[+] EMBL BM649189 [ CCGGTCCGTCC CGTAAGTGGAGACGTGGAAAACAGCTGCCCCCGTGGTGTAGGAAAAGTAGCACCAGTGCTCAGCTATTGAACCCCCGAATGTGTGTTTTCCGTCGTGAAAACGTGAACAGTGAATAAACCTAAACGCGTCACGGTGGTGCTTCCTTGCGAGTGAGTGTGTGTCGGCGGGTTTTGTGTTCGAGAGATGGCGGAGAAACGACGTGCCAAGAAGCGAAAGGATGAATACAGCGGTCCCGGAGGCGCAGAACAGGAGATTGAAAAAGCTTCCAAGGATGAGTACAAGGTGGCAAAATGGCTCAAATCGAACGTACCGACGAAAAAGACCAAATTTCTGAATCACAATGTGGAATACTTTTCTGCCATCAAAGCAATCGATGCACTGCTTGCGTCAAAGTTTGCCCAGGGTGACAACTGTCTCTTTCCGCACCGGCAGGCCGTGATTGATTTTATGGGCGATATGCTGTACCACAAGTTTTTCCACCGCGCCCGAAAGGTCCCGGTCAGCGAGCAGGAGCTGCGCGGGAAGAACAGCAAAAAGGCAGCCGCAGAGGCCTTGGTGACGGCCAGCTCGGCTAAGGATGGCTCCAAACAAACGGCGACAAAGGAGGAACGAGCAACCGACGCGGAAAGTAGCCACGCGGAGGGCAGCAAGGCGGT ]
[+] EMBL BM653407 [ CCGGTCCGTCC CGTAAGTGGAGACGTGGAAAACAGCTGCCCCCGTGGTGTAGGAAAAGTAGCACCAGTGCTCAGCTATCGAACCCCCGAATGTGTGTTTTCCGTCGTGAAAACGTGAACAGTGAATAAACCTAAACGCGTCACGGTGGTGCTTCCTTGCGAGTGAGTGTGTGTCGGCGGGTTTTGTGTTCGAGAGATGGCGGAGAAACGACGTGCCAAGAAGCGAAAGGATGAATACAGCGGTCCCGGAGGCGCAGAACAGGAGATTGAAAAAGCTTCCAAGGATGAGTACAAGGTGGCAAAATGGCTCAAATCGAACGTACCGACGAAAAAGACCAAATTTCTGAATCACAATGTGGAATACTTTTCTGCCATCAAAGCAATCGATGCACTGCTTGCGTCAAAGTTTGCCCAGGGTGACAACTGTCTCTTTCCGCACCGGCAGGCCGTGATTGATTTTATGGGCGATATGCTGTACCACAAGTTTT ]
[+] EMBL BM612975 [ acgCGTCCGCGTAAGTGGAGACGTGGAAAACAGCTGCCCCCGTGGTGTAGGAAAAGTAGCACCAGTGCTTTGCTATTGAATCCCCGAATGTGTGTTTTCCGTCGTGAAAACGTGAACAGTGAATAAACCTAAACGTGTCACGGTGGTGCTTCCTTGCGAGTGAGTGTGTGTCGGCGGGTTTTGTGTTCGAGAGATGGCGGAGAAACGACGTGCCAAGAAGCGAAAGGATGAATACAGCGGTCCCGGAGGCGCAGAACAGGAGATTGAAAAAGCTTCCAAGGATGAATACAAGGTGGCAAAATGGCTCAAATCGAACGTACCGACGAAAAAGACCAAATTTCTGAATCACAATGTGGAATACTTTTCTGCCATCAAAGCAATCGATGCACTGCTTGCGTCAAAGTTTGCCCAGGGTGACAACTGTCTCTTTCCGCACCGGCAGGCCGTGATTGATTTTATGGGCGATATGCTGTACCACAAGTTTTTCCACCGCGCCCGAAAGGTCCCGGTCAGCGAGCAGGAGCTGCGCGGGAAGAACAGCAAAAAGGCAGCCGCAGAGGCCTTGGTGACGGCCAGCTCGGCTAAGGATGGCTCCAAACAAACGGCGACAAAGGAGGAACGAGCAACCGACGCGGAAAGTAGCCACGCGGAGGGCAGCAAGGCGGTGGGCGGAAGCGGTAGCGGGAAAA ]
[+] EMBL BM609104 [ cCGAAAAAGACCAAATTTCTGAATCACAATGTGGAATACTTTTCTGCCATCAAAGCAATCGATGCACTGCTTGCGTCAAAGTTTGCCCAGGGTGACAACTGTCTCTTTCCGCACCGGCAGGCCGTGATTGATTTTATGGGCGATATGCTGTACCACAAGTTTTTCCATCGCGCCCGAAAGGTCCCGGTCAGCGAGCAGGAGCTGCGCGGGAAGAACAGCAAAAAGGCAGCCGCAGAGGCCTTGGTGACGGCCAGCTCGGCTAAGGATGGCTCCAAACAAACGGCGACAAAGGAGGAACGGGCAACCGACGCGGAAAGTAGCCACGCGGAGGGCAGCAAGGCGGT GGCGGAAGCGGTAGCGGAAAAGCGAAAGCGCAAGATCCGTCTAGAGATGCACCCGGAGCAGCTGTTTATC GATGGGCACGAGGCGTACGTCTGGCTGTACGATCCGATCCCGATGCATTACTGGATCTTTGGCGCACTGCTGGTGGTGGGCGCGATCGTCATCTGTCTATTCCCGCTGTGGCCACCGCTGCTGCGAAAGGGGGTGTACTAT CTGAGCATAGC GGC GGCCGGCT TTTTGG TGTTTAT TCTCGGCCTGGTCGTGTTGCGGTGCATCCTGT TCTGT CTGGGTGTGGGTGGTGACC GGTGGAAAGCACCACTTCTGGCTGCTACCGAATCTGACGGAAGATGTCGGCTT ]
[+] EMBL AL932047 [ aatnGCCCGAGGTTAGTCTA AGATGCA CCGGAGCAGCTGTTTATCTGATGGGCACGAGGCGTACGTCTGGCTGTACGATCCGATTCCGATGCATTACTGGATCTTTGGCGCACTGCTGGTGGTGGGCGCGATCGTCATCTGTCTATTCCCGCTGTGGCCACCGCTGCTGCGAAAGGGGGTGTACTATACTGAGCATAGCTGGCTGGCTGGCTTATTTTGGTTGTTTATATCTCGGCCTGGTCGTGTTGCGGTGCATCCTGTATCTGTACT GGTGTGGGTGGTGACCTGGTGGAAAGCACCA TTCTGGCTGCTACCGAATCTGACGGAAGATGTCGGTTCTTTGCCTCCTTCTGGCCACTGTACAATCATGAATACAAGGACTGGTCAGAGTGGCACCTGAGAAGGGTAGCAAGAAGACAAAAAAACGAAAACGCGACAAGGACATGTGGCGGCTGAAGAGGAGAGTACCACCACCGGCAATATCCCACCGACTGATCGACTGAGTGTTGAANGGACGCGTGACACTGACGGAAAGCGGCAACATCTTCANCANGCGCCNGCAGACCGNNGGGTTAAGGCATNGNGGAAGCCTAANCAAGCAGCATGCAGCAGCCGCAGGAATCTTCACCCAGTGTNCTGTCCCACCGGTNACAATTGGCGAGATCATCGACGAAGGAAGCAAAAATCCGGNAAANAACCGTCGGACCACGTGATCGGAANGGTACGCANGCGCTCANCACTCCACGGGGAAAGGACNCNTNNNANACATTGGTCNAAGTCCAGGATTAAGNTGGAAAAACATCNCCNTAACAGCCANAAAACGTTTAATTCGAGANNNGCCGGNTATACATTACCANNTNACCCCCAATTCACAGATTGGCAGACAACACAGTNGTACCCGNTGACGTGGNATCGCGNAAAAACACAACTANNTCNAGTNACAAATTGGAGCAAGCGNGCNNAAANATAACACCACCCACAAAATTTANNGGCACACAC]
consensusID : consensus_9235#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1362 fasta sequence
[AATGGGAAGAGTCTGTCCCGTAAGTGGAGACGTGGAAAACAGCTGCCCCCGTGGTGTAGGAAAAGTAGCACCAGTGCTCAGCTATTGAACCCCCGAATGTGTGTTTTCCGTCGTGAAAACGTGAACAGTGAATAAACCTAAACGCGTCACGGTGGTGCTTCCTTGCGAGTGAGTGTGTGTCGGCGGGTTTTGTGTTCGAGAGATGGCGGAGAAACGACGTGCCAAGAAGCGAAAGGATGAATACAGCGGTCCCGGAGGCGCAGAACAGGAGCTGCGCGGGAAGAACAGCAAAAAGGCAGCCGCAGAGGCCTTGGTGACGGCCAGCTCGGCTAAGGATGGCTCCAAACAAACGGCGACAAAGGAGGAACGGGCAACCGACGCGGAAAGTAGCCACGCGGAGGGCAGCAAGGCGGTGGCGGAAGCGGTAGCGGAAAAGCGAAAGCGCCAAGATCCGTCTAGAGATGCACCCGGAGCAGCTGTTTATCGATGGGCACGAGGCGTACGTCTGGCTGTACGATCCGATCCCGATGCATTACTGGATCTTTGGCGCACTGCTGGTGGTGGGCGCGATC-GTCATCTGTCTATTCCCGCTGTGGCCACCGCTGCTGCGAAAGGGGGTGTACTATCTGAGCATAGCGGCGGCCGGCTTTTTGGTGTTTATTCTCGGCCTGGTCGTGTTGCGGTGCATCCTGTTCTGTCTGGTGTGGGTGGTGACCGGTGGAAAGCACCACTTCTGGCTGCTACCGAATCTGACGGAAGATGTCGGCTTCTTTGCCTCCTTCTGGCCACTGTACAATCATGAATACAAGGACGGTCAGAGTGGCACCGAGAAGGGTAGTAAGAAGACGAAAAAACGAAAACGC-GACAAGGACAGTGGCGGCGAAGAGGAGAGTACCACCGCCGGCAATATCCCACCGACGATCGACGAGGTGAAGGAGCGTGACACTGA---GGAAAGCGGCAAATCTTCACCAGCGCCGGCAGCCGAAGGGTTAAGGCATCGTGGAGCTAAGCAGCAGCAGCAGCAGCAGCCGCAGGAATCTTCATCAGTGTCCGTCCCACCGGTCACAATTGCCGAGTCGATCGACGAGGAGCAAAACTCCGGAACGCCGTCGGAAAGTGACTCGGAAGGCTCGCAGCGCTCCTCCACGGGGAAGGACTTTGAGATGGTCGAGCCGGATGAGGTGGATACCTCGTAAATCAGAACAAGTTAATCGACATGCGCGCGTTACATTTTCATATCACCCTCAATCCACGACTGCAGCAGTACTAGCTGCTTACCAGCTGAAATGGATCGGATAGCAACACCAATCATTCTCGTACCACATCTGCAAACCAAACCCTGCTAAAAAAAAAATAATAACA]
[+] EMBL CNS08IOP [AATGGGAAGAGTCTGTCCCGTAAGTGGAGACGTGGAAAACAGCTGCCCCCGTGGTGTAGGAAAAGTAGCACCAGTGCTCAGCTATTGAACCCCCGAATGTGTGTTTTCCGTCGTGAAAACGTGAACAGTGAATAAACCTAAACGCGTCACGGTGGTGCTTCCTTGCGAGTGAGTGTGTGTCGGCGGGTTTTGTGTTCGAGAGATGGCGGAGAAACGACGTGCCAAGAAGCGAAAGGATGAATACAGCGGTCCCGGAGGCGCAGAACAGGAGCTGCGCGGGAAGAACAGCAAAAAGGCAGCCGCAGAGGCCTTGGTGACGGCCAGCTCGGCTAAGGATGGCTCCAAACAAACGGCGACAAAGGAGGAACGGGCAACCGACGCGGAAAGTAGCCACGCGGAGGGCAGCAAGGCGGTGGCGGAAGCGGTAGCGGAAAAGCGAAAGCGCCAAGATCCGTCTAGAGATGCACCCGGAGCAGCTGTTTATCGATGGGCACGAGGCGTACGTCTGGCTGTACGATCCGATCCCGATGCATTACTGGATCTTTGGCGCACTGCTGGTGGTGGGCGCGATCGGTCATCTGTCTATTCCCGCTGTGGCCACCGCTGCTGCGAAAGGGGGTGTACTATCTGAGCATAGCGGCGGCCGGCTTTTTGGTGTTTATTCTCGGCCTGGTCGTGTTGCGGTGCATCCTGTTCTGTCTGGTGTGGGTGGTGACCGGTGGAAAGCACCACTT ]
[+] EMBL BM623012 [ ccGCTCCAAACAAACGGCGACAAAGGAGGAACGGGCAACCGACGCGGAAAGTAGCCACGCGGAGGGCAGCAAGGCGGTGGCGGAAGCGGTAGCGG ]
[+] EMBL CNS08DHL [ AAGGCGGTGGCGGAAGCGGTAGCGGAAAAGCGAAAGCGCGAAGATCCGTCTAGAGATGCACCCGGAGCAGCTGTTTATCGATGGGCACGAGGCGTACGTCTGGCTGTACGATCCGATCCCGATGCATTACTGGATCTTTGGCGCACTGCTGGTGGTGGGCGCGATC GTCATCTGTCTATTCCCGCTGTGGCCACCGCTGCTGCGAAAGGGGGTGTACTATCTGAGCATAGCGGCGGCCGGCTTTTTGGTGTTTATTCTCGGCCTGGTCGTGTTGCGGTGCATCCTGTTCTGTCTGGTGTGGGTGGTGACCGGTGGAAAGCACCACTTCTGGCTGCTACCGAATCTGACGGAAGATGTCCTCTTCTTTGCCTCCTTCTGGCCACTGTACAATCATGAATACAAGGACGGTCAGAGTGGCACCGAGAAGGGTAGTAAGAAGACGAAAAAACGAAAACGC GACAAGGACAGTGGCGGCGAAGAGGAGAGTACCACCGCCGGCAATATCCCACCGACGATCGACGAGGTGAAGGAGCGTGACACTGA GGAAAGCGGCAAATCTTCACCAGCGCCGGCAGCCGAAGGGTTAAGGCATCGTGGAGCTAAGCAGCAGCAGCAGCAGCAGCCGCAGGAATCTTCATCAGTGTCCGTCCCACCGGTCACAATTGCCGAGTCGATCGACGAGGAGCAAAACTCCGGAACGCCGTCGGAAAGTGACTCGGAAGGCTCGCAGCGCTCCTCCACGGGGAAGGACTTTGAGATGGTCGAGCCGGATGAGGTGGATACCTCGTAAATCAGAACAAGTTAATCG ]
[+] EMBL BM642965 [ ccgGAGATGCACCCGGAGCAGCTGTTTATCGATGGGCACGAGGCGTACGTCTGGCTGTACGATCCGATCCCGATGCATTACTGGATCTTTGGCGCACTGCTGGTGGTGGGCGCGATC GTCATCTGTCTATTCCCGCTGTGGCCACCGCTGCTGCGAAAGGGGGTGTACTATCTGAGCATAGCGGCGGCCGGCTTTTTGGTGTTTATTCTCGGCCTGGTCGTGTTGCGGTGCATCCTGTTCTGTCTGGTGTGGGTGGTGACCGGTGGAAAGCACCACTTCTGGCTGCTACCGAATCTGACGGAAGATGTCGGCTTCTTTGCCTCCTTCTGGCCACTGTACAATCATGAATACAAGGACGGTCAGAGTGGCACCGAGAAGGGTAGCAAGAAGACGAAAAAGCGAAAACGC GACAAGGACAGTGGCGGCGAAGAGGAAAGTACCACCGCCGGCAATATCCCACCGACGATCGACGAGGTGAAGGAGCGTGACACTGAGGTGGAAAGCGGCAAATCTTCACCTGCGCCGGCAGCCGAAGGGTTAAGGCATCGTGGAGCTA AGCAGCAGCAGCAGCAGCCGCAGGAATCTGTACCAGTGTCCGTCCCACCGGTCACAATTGCCGAGTCGATCGACGAGGAGCAAAACTCCGGAACACCGTCGGAAAGTGACTCGGAAGGCTCGCAGC ]
[-] EMBL CNS08IOQ [ TCCCGATGCATAACTGGATTTTTGGCGAACTGCTGGTGGTGGGCGCGATC GTCATCTGTCTATTCCCGCTGTGGCCACCGCTGCTGCGAAAGGGGGTGTACTATCTGAGCATAGCGGCGGCCGGCTTTTTGGTGTTTATTCTCGGCCTGGTCGTGTTGCGGTGCATCCTGTTCTTTCTGGTGTGGGTGGTGACCGGTGGAAAGCACCACTTCTGGCTGCTACCGAATCTGACGGAAGATGTCGGCTTCTTTGCCTCCTTCTGGCCACTGTACAATCATGAATACAAGGACGGTCAAAGTGGCGCCGAGAAGGGTAGTAAGAAGACGAAAAAACGAAAACGCGGACAAGGAAAGTGGCGGCGAAGAGGAGAGTACCACCGCCGGCAATATCCCACCGACGATCGACGAGGTGAAGGAGCGTGACACTGA GGAAAGCGGCAAATCTTCACCAGCGCCGGCAGCCGAAGGGTTAAGGCATCGTGGAGCTAAGCAGCAGCAGCAGCAGCAGCCGCAGGAATCTTCATCAGTGTCCGTCCCACCGGTCACAATTGCCGAGTCGATCGACGAGGAGCAAAACTCCGGAACGCCGTCGGAAAGTGACTCGGAAGGCTCGCAGCGCTCCTCCACGGGGAAGGACTTTGAGATGGTCGAGCCGGATGAGGTGGATACCTCGTAAATCAGAACAAGTTAATCGACATGCGCGCGTTACATTTTCATATCACCCTCAATCCACGACTGCAGCAGTACTAGCTGCTTACCAGCTGAAATGGATCGGATAGCAACACCAATCATTCTCGTACCACATCTGCAAACCAAACCCTGCTAAAAAAAAAATAATAACA]
[-] EMBL CNS08DHM [ TGA GGAAAGCGGCAAATCTTCACCAGCGCCGGCAGCCGAAGGGTTAAGGCATCGTGGAGCTAAGCAGCAGCAGCAGCAGCAGCCGCAGGAATTTTCATCAGTGTCCGTCC ]
consensusID : consensus_9235#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 602 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGGGAAGAGTCCGTCCCGTAAGTGGAGACGTGGAAAACAGCTGCCCCCGTGGTGTAGGAAAAGTAGCACCAGTGCTCAGCTATCGAACCCCCGAATGTGTGTTTTCCGTCGTGAAAACGTGAACAGTGAATAAACCTAAACGCGTCACGGTGGTGCTTCCTTGCGAGTGAGTGTGTGTCGGCGGGTTTTGTGTTCGAGAGATGGCGGAGAAACGACGTGCCAAGAAGCGAAAGGATGAATACAGCGGTCCCGGAGGCGCAGAACAGGAGATTGAAAAAGCTTCCAAGGATGAGTACAAGGTGGCAAAATGGCTCAAATCGAACGTACCGACGAAAAAGACCAAATTTCTGAATCACAATGTGGAATACTTTTCTGCCATCAAAGCAATCGATGCACTGCTTGCGTCAAAGTTTGCCCAGGGTGACAACTGTCTCTTTCCGCACCGGCAGGCCGTGATTGATTTTATGGGCGATATGCTGTACCACAAGTTTTTCCATCGCGCCCGAAAGGTCCCGGTCAGCGAGCAGGAGCTGCGCGGGAAGAACAGCAAAAAGGCAGCCGCAGAGGCCTTGGTGA]
[+] EMBL BM621175 [CCGCCCACGCGTCCGCCCACGCGTCCGGGGAAGAGTCCGTCCCGTAAGTGGAGACGTGGAAAACAGCTGCCCCCGTGGTGTAGGAAAAGTAGCACCAGTGCTCAGCTATCGAACCCCCGAATGTGTGTTTTCCGTCGTGAAAACGTGAACAGTGAATAAACCTAAACGCGTCACGGTGGTGCTTCCTTGCGAGTGAGTGTGTGTCGGCGGGTTTTGTGTTCGAGAGATGGCGGAGAAACGACGTGCCAAGAAGCGAAAGGATGAATACAGCGGTCCCGGAGGCGCAGAACAGGAGATTGAAAAAGCTTCCAAGGATGAGTACAAGGTGGCAAAATGGCTCAAATCGAACGTACCGACGAAAAAGACCAAATTTCTGAATCACAATGTGGAATACTTTTCTGCCATCAAAGCAATCGATGCACTGCTTGCGTCAAAGTTTGCCCAGGGTGACAACTGTCTCTTTCCGCACCGGCAGGCCGTGATTGATTTTATGGGCGATATGCTGTACCACAAGTTTTTCCATCGCGCCCGAAAGGTCCCGGTCAGCGAGCAGGAGCTGCGCGGGAAGAACAGCAAAAAGGCAGCCGCAGAGGCCTTGGTGA]
consensusID : consensus_9235#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 576 fasta sequence
[AGAATCCCCCGAGGTTNNTACACAAGTTTTTCCACCGCGCCCGAAAGGTCCCGGTCAGCTGAGCAGGAGCTGCGCGGGAAGAACAGCAAAAAGGCAGCCGCAGAGGCCTTGTGTGACGGCCAGCTCGGCTAAGTGATGGCTCCAAACAAACTTGCTGACAAAGGATGGAACTGAGCAACCGACTGCGGAAATGTAGCCACGCTGGAGTGGCATGCAAGGCGGTGTGCTGNGAATGCGGTAGCTGGAAAATGCGAAAGCGCAAGATCCGTCTAGAGATGCACCCGGAGCAGCTGTTTATCGATGGGCACGAGGCGTACGTCTGGCTGTACGATCCGATTCCGATGCATTACTTGGATCTTTGGCGCACTGCTGGTGGTGGGCTGCGATCTGTCATCTGTCTATTCCCGCTGTGGCCACCGCTGCTGCGAAAGGGGTGTGTACTATCTTGAGCATAGCGGCTGGCCGGCTTTTTTGGTTGTTTATTCTCGGCCTGGTCCCTGTTGCCGGTGCATCCCTGGTTCTGTCTGGCTGTGGNTGGTGACCTGGTGGCACAANGCACCACTCTCTGGCTGCTAC]
[+] EMBL AL932017 [AGAATCCCCCGAGGTTNNTACACAAGTTTTTCCACCGCGCCCGAAAGGTCCCGGTCAGCTGAGCAGGAGCTGCGCGGGAAGAACAGCAAAAAGGCAGCCGCAGAGGCCTTGTGTGACGGCCAGCTCGGCTAAGTGATGGCTCCAAACAAACTTGCTGACAAAGGATGGAACTGAGCAACCGACTGCGGAAATGTAGCCACGCTGGAGTGGCATGCAAGGCGGTGTGCTGNGAATGCGGTAGCTGGAAAATGCGAAAGCGCAAGATCCGTCTAGAGATGCACCCGGAGCAGCTGTTTATCGATGGGCACGAGGCGTACGTCTGGCTGTACGATCCGATTCCGATGCATTACTTGGATCTTTGGCGCACTGCTGGTGGTGGGCTGCGATCTGTCATCTGTCTATTCCCGCTGTGGCCACCGCTGCTGCGAAAGGGGTGTGTACTATCTTGAGCATAGCGGCTGGCCGGCTTTTTTGGTTGTTTATTCTCGGCCTGGTCCCTGTTGCCGGTGCATCCCTGGTTCTGTCTGGCTGTGGNTGGTGACCTGGTGGCACAANGCACCACTCTCTGGCTGCTAC]
consensusID : consensus_9235#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 478 fasta sequence
[ATCCCCCGAGTTNTGGCGCACTGCTGGTGGTGGGCGCGAACGTCATCTGTCTATTCCCGCTGTGGCACCGCTGCTGCGAAAGGGGGTGTACTATCTGAGCATAGCGGCGGCGGCTTTTTGGTGTTTATTCTCGGCCTGGTCGTGTTGCGGTGCATCCTGTTCTGTCTGGTGTGGGTGGTGACCGGTGGAAAGCACCACTTCTGGCTGCTACCGAATCTGACGGAAGATGTCGGCTTCTTTGCCTCCTTCTGGCCACTGTACAATCATGAATACAAGGACGGTCAGAGTGGCACCGAGAAGGGTAGTAAGAAGACGAAAAAACGAAAACGCGACAAGGACAGTGGCGGCGAAGAGGAGAGTACCACCGCCGGCAATATCCCACCGACGATCGACGAGGTGAAGGAGCGTGACACTGAGGAAAGCGGCAAATCTTCACCAGCGCCGGCAGCCGAAGGGTTAAGGCATCGTGGAGCTAAGC]
[+] EMBL AL932312 [ATCCCCCGAGTTNTGGCGCACTGCTGGTGGTGGGCGCGAACGTCATCTGTCTATTCCCGCTGTGGCACCGCTGCTGCGAAAGGGGGTGTACTATCTGAGCATAGCGGCGGCGGCTTTTTGGTGTTTATTCTCGGCCTGGTCGTGTTGCGGTGCATCCTGTTCTGTCTGGTGTGGGTGGTGACCGGTGGAAAGCACCACTTCTGGCTGCTACCGAATCTGACGGAAGATGTCGGCTTCTTTGCCTCCTTCTGGCCACTGTACAATCATGAATACAAGGACGGTCAGAGTGGCACCGAGAAGGGTAGTAAGAAGACGAAAAAACGAAAACGCGACAAGGACAGTGGCGGCGAAGAGGAGAGTACCACCGCCGGCAATATCCCACCGACGATCGACGAGGTGAAGGAGCGTGACACTGAGGAAAGCGGCAAATCTTCACCAGCGCCGGCAGCCGAAGGGTTAAGGCATCGTGGAGCTAAGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9235#1 ------------------------------------------------------------
consensus_9235#4 ------------------------------------------------------------
consensus_9235#3 ------------------------------------------------------------
consensus_9235#0 CCGCCACTTTCAGGTTGTCAATGGGACCGGTCCGTCCCGTAAGTGGAGACGTGGAAAACA 60
consensus_9235#2 ------------------------------------------------------------
consensus_9235#1 ------------------------------------------------------------
consensus_9235#4 ------------------------------------------------------------
consensus_9235#3 ------------------------------------------------------------
consensus_9235#0 GCTGCCCCCGTGGTGTAGGAAAAGTAGCACCAGTGCTCAGCTATCGAACCCCCGAATGTG 120
consensus_9235#2 ------------------------------------------------------------
consensus_9235#1 ------------------------------------------------------------
consensus_9235#4 ------------------------------------------------------------
consensus_9235#3 ------------------------------------------------------------
consensus_9235#0 TGTTTTCCGTCGTGAAAACGTGAACAGTGAATAAACCTAAACGCGTCACGGTGGTGCTTC 180
consensus_9235#2 ------------------------------------------------------------
consensus_9235#1 ------------------------------------------------------------
consensus_9235#4 ------------------------------------------------------------
consensus_9235#3 ------------------------------------------------------------
consensus_9235#0 CTTGCGAGTGAGTGTGTGTCGGCGGGTTTTGTGTTCGAGAGATGGCGGAGAAACGACGTG 240
consensus_9235#2 ------------------------------------------------------------
consensus_9235#1 ----------------------------------------AATGGGAAGAGTCTGTCCCG 20
consensus_9235#4 ------------------------------------------------------------
consensus_9235#3 ------------------------------------------------------------
consensus_9235#0 CCAAGAAGCGAAAGGATGAATACAGCGGTCCCGGAGGCGCAGAACAGGAGATTGAAAAAG 300
consensus_9235#2 ------------------------------------------------------------
consensus_9235#1 TAAGTGGAGACGTGGAAAACAGCTGCCCCCGTGGTGTAGGAAAAGTAGCACCAGTGCTCA 80
consensus_9235#4 ------------------------------------------------------------
consensus_9235#3 ------------------------------------------------------------
consensus_9235#0 CTTCCAAGGATGAGTACAAGGTGGCAAAATGGCTCAAATCGAACGTACCGACGAAAAAGA 360
consensus_9235#2 ------------------------------------------------------------
consensus_9235#1 GCTATTGAACCCCCGAATGTGTGTTTTCCGTCGTGAAAACGTGAACAGTGAATAAACCTA 140
consensus_9235#4 ------------------------------------------------------------
consensus_9235#3 ------------------------------------------------------------
consensus_9235#0 CCAAATTTCTGAATCACAATGTGGAATACTTTTCTGCCATCAAAGCAATCGATGCACTGC 420
consensus_9235#2 ------------------------------------------------------------
consensus_9235#1 AACGCGTCACGGTGGTGCTTCCTTGCGAGTGAGTGTGTGTCGGCGGGTTTTGTGTTCGAG 200
consensus_9235#4 ------------------------------------------------------------
consensus_9235#3 ------------------------------------------------------------
consensus_9235#0 TTGCGTCAAAGTTTGCCCAGGGTGACAACTGTCTCTTTCCGCACCGGCAGGCCGTGATTG 480
consensus_9235#2 ------------------------------------------------------------
consensus_9235#1 AGATGGCGGAGAAACGACGTGCCAAGAAGCGAAAGGATGAATACAGCGGTCCCGGAGGCG 260
consensus_9235#4 ------------------------------------------------------------
consensus_9235#3 ------------------------------------------------------------
consensus_9235#0 ATTTTATGGGCGATATGCTGTACCACAAGTTTTTCCATCGCGCCCGAAAGGTCCCGGTCA 540
consensus_9235#2 ------------------------------------------------------------
consensus_9235#1 CAGAACAGGAGCTGCGCGGGAAGAACAGCAAAAAGGCAGCCGCAGAGGCCTTGGTGACGG 320
consensus_9235#4 ------------------------------------------------------------
consensus_9235#3 ------------------------------------------------------------
consensus_9235#0 GCGAGCAGGAGCTGCGCGGGAAGAACAGCAAAAAGGCAGCCGCAGAGGCCTTGGTGACGG 600
consensus_9235#2 ------------------------------------------------------------
consensus_9235#1 CCAGCTCGGCTAAGGATGGCTCCAAACAAACGGCGACAAAGGAGGAACGGGCAACCGACG 380
consensus_9235#4 ------------------------------------------------------------
consensus_9235#3 ------------------------------------------------------------
consensus_9235#0 CCAGCTCGGCTAAGGATGGCTCCAAACAAACGGCGACAAAGGAGGAACGGGCAACCGACG 660
consensus_9235#2 ------------------------------------------------------------
consensus_9235#1 CGGAAAGTAGCCACGCGGAGGGCAGCAAGGCGGTGGCGGAAGCGGTAGCGGAAAAGCGAA 440
consensus_9235#4 ------------------------------------------------------------
consensus_9235#3 ------------------------------------------------------------
consensus_9235#0 CGGAAAGTAGCCACGCGGAGGGCAGCAAGGCGGTGGCGGAAGCGGTAGCGGGAAAACGAA 720
consensus_9235#2 ------------------------------------------------------------
consensus_9235#1 AGCGCCAAGATCCGTCTAGAGATGCACCCGGAGCAGCTGTTTATCGATGGGCACGAGGCG 500
consensus_9235#4 ------------------------------------------------------------
consensus_9235#3 --------------------------------------AGAATCCCCCGAGGTTNNTACA 22
consensus_9235#0 AGCGC-AAGATCCGTCTAGAGATGCACCCGGAGCAGCTGTTTATCGATGGGCACGAGGCG 779
consensus_9235#2 ------------------------------CCGCCCACGCGTCCGCCCACGCGTCCGGGG 30
consensus_9235#1 TACGTCTGGCTGTACGATCCGATCCCGATGCATTACTGGATCTTTGGCGCACTGCTGGTG 560
consensus_9235#4 -------------------------------ATCCCCCGAGTTNTGGCGCACTGCTGGTG 29
consensus_9235#3 CAAGTTTTTCCACCGCGCCCGAAAGGTCCCGGTCAGCTGAG--CAGGAGCTGCGCGGGAA 80
consensus_9235#0 TACGTCTGGCTGTACGATCCGATCCCGATGCATTACTGGATCTTTGGCGCACTGCTGGTG 839
consensus_9235#2 AAGAGTCCGTCCCGTAAGTGGAGACGTGGAAAACAGCTGCC--CCCGTGGTGTAGGAAAA 88
* * *
consensus_9235#1 GTGGGCGCGATCGTCATCTGTCTATTCCC----GCTGTGGCCACCGCTGCTGCGAAAGGG 616
consensus_9235#4 GTGGGCGCGAACGTCATCTGTCTATTCCC----GCTGTGGC-ACCGCTGCTGCGAAAGGG 84
consensus_9235#3 GAACAGCAAAAAGGCAGCCGCAGAGGCCT----TGTGTGACGGCCAGCTCGGCTAAGTGA 136
consensus_9235#0 GTGGGCGCGATCGTCATCTGTCTATTCCC----GCTGTGGCCACCGCTGCTGCGAAAGGG 895
consensus_9235#2 GTAGCACCAGTGCTCAGCTATCGAACCCCCGAATGTGTGTTTTCCGTCGTGAAAACGTGA 148
* ** * * ** **** ** * *
consensus_9235#1 GGTGTACT---ATCTGAGCA--TAGCGGCGGCCGGCTTTTTGGTGTTTATTCTCGGCCTG 671
consensus_9235#4 GGTGTACT---ATCTGAGCA--TAGCGGCGGC-GGCTTTTTGGTGTTTATTCTCGGCCTG 138
consensus_9235#3 TGGCTCCA---AACAAACTTGCTGACAAAGGATGGAACTGAGCAACCGACTGCGGAAATG 193
consensus_9235#0 GGTGTACT---ATCTGAGCA--TAGCGGCGGCCGGCTTTTTGGTGTTTATTCTCGGCCTG 950
consensus_9235#2 ACAGTGAATAAACCTAAACGCGTCACGGTGGT-GCTTCCTTGCGAGTGAGTGTGTGTCGG 207
* * * * * * ** * * * * *
consensus_9235#1 ---GTCGTGTTGCGGTG-CATCCTGTTCTGTCTGG-TGTGGGTG--GTGACCGGTG---- 720
consensus_9235#4 ---GTCGTGTTGCGGTG-CATCCTGTTCTGTCTGG-TGTGGGTG--GTGACCGGTG---- 187
consensus_9235#3 TA-GCCACGCTGGAGTGGCATGCAAGGCGGTGTGC-TGNGAATGCGGTAGCTGGAAAATG 251
consensus_9235#0 ---GTCGTGTTGCGGTG-CATCCTGTTCTGTCTGGGTGTGGGTG--GTGACCGGTG---- 1000
consensus_9235#2 CGGGTTTTGTGTTCGAGAGATGGCGGAGAAACGACGTGCCAAGAAGCGAAAGGATGAATA 267
* * * * ** ** *
consensus_9235#1 -GAAAGCACCACTTCTGGCT------GCTACCGAATCTGACGGAAGATGTCGGCTTCTTT 773
consensus_9235#4 -GAAAGCACCACTTCTGGCT------GCTACCGAATCTGACGGAAGATGTCGGCTTCTTT 240
consensus_9235#3 CGAAAGCGCAAGATCCGTCTAGAGATGCACCCGGAGCAGCTGTTTATCGATGGGCACGAG 311
consensus_9235#0 -GAAAGCACCACTTCTGGCT------GCTACCGAATCTGACGGAAGATGTCGGCTT-TTT 1052
consensus_9235#2 CAGCGGTCCCGGAGGCGCAGA-ACAGGAGATTGAAAAAGCT-TCCAAGGATGAGTACAAG 325
* * * * * * * * *
consensus_9235#1 GCCTCCTTCTGGCC--ACTGTACAATCATGAA----TACAAGGAC-GGTCAGAGTGGCAC 826
consensus_9235#4 GCCTCCTTCTGGCC--ACTGTACAATCATGAA----TACAAGGAC-GGTCAGAGTGGCAC 293
consensus_9235#3 GCGTACGTCTGGCTGTACGATCCGATTCCGATGCATTACTTGGAT-CTTTGGCGCACTGC 370
consensus_9235#0 GCCTCCTTCTGGCC--ACTGTACAATCATGAA----TACAAGGACTGGTCAGAGTGGCAC 1106
consensus_9235#2 GTGGCAAAATGGCTCAAATCGAACGTACCGACGAAAAAGACCAAA-TTTCTGAATCACAA 384
* **** * * ** * * * *
consensus_9235#1 CGA-GAAGGGTAGTAAGAAGACGAAAAAACGAAAACGCGACAAGGACA-GTGGCGGCGAA 884
consensus_9235#4 CGA-GAAGGGTAGTAAGAAGACGAAAAAACGAAAACGCGACAAGGACA-GTGGCGGCGAA 351
consensus_9235#3 TGGTGGTGGGCTGCGATCTGTCATCTGTCTATTCCCGCTGTGGCCACC-GCTGCTGCGAA 429
consensus_9235#0 CTGAGAAGGGTAGCAAGAAGACAAAAAAACGAAAACGCGACAAGGACATGTGGCGGCTGA 1166
consensus_9235#2 TGTGGAATACTTTTCTGCCATCAAAGCAATCGATGCACTGCTTGCGTCAAAGTTTGCCCA 444
* * * * ** *
consensus_9235#1 GAG-GA-GAGTACCACCGCCGGCAATATCCCACCG--AC-GATCGACGAGGTGAAGGAG- 938
consensus_9235#4 GAG-GA-GAGTACCACCGCCGGCAATATCCCACCG--AC-GATCGACGAGGTGAAGGAG- 405
consensus_9235#3 AGG-GGTGTGTACTATCTTGAGCA-TAGCGGCTGG--CC-GGCTTTTTTGGTTGTTTAT- 483
consensus_9235#0 AGA-GGAGAGTACCACCACCGGCAATATCCCACCG--ACTGATCGACTGAGTGTTGAANG 1223
consensus_9235#2 GGGTGACAACTGTCTCTTTCCGCACCGGCAGGCCGTGATTGATTTTATGGGCGATATGCT 504
* * *** * * * *
consensus_9235#1 ----CGTGACACTGA-GGAAAGCGGCAAAT-CTTCACC-AGCGCCGGCAG-CCGAAGGGT 990
consensus_9235#4 ----CGTGACACTGA-GGAAAGCGGCAAAT-CTTCACC-AGCGCCGGCAG-CCGAAGGGT 457
consensus_9235#3 ----TCTCGGCCTGG-TCCCTGTTGCCGGTGCATCCCT-GGTTCTGTCTG-GCTGTGGNT 536
consensus_9235#0 GACGCGTGACACTGACGGAAAGCGGCAACATCTTCANCANGCGCCNGCAGACCGNNGGGT 1283
consensus_9235#2 GTACCACAAGTTTTT-CCATCGCGCCCGAAAGGTCCCGGTCAGCGAGCAGGAGCTGCGCG 563
* * * ** * * * *
consensus_9235#1 TAAGGCATCGTGGAG--CTAAGCA-GCAGCAGCAGCAGCAGCCGCAGGAATCTTCATCAG 1047
consensus_9235#4 TAAGGCATCGTGGAG--CTAAGC------------------------------------- 478
consensus_9235#3 GGTGACCTGGTGGCA--CAANGCA-CCACTCTCTGGCTGCTAC----------------- 576
consensus_9235#0 TAAGGCATNGNGGAAGCCTAANCAAGCAGCATGCAGCAGCCGCAGGAATCTTCACCCAGT 1343
consensus_9235#2 GGAAGAACAGCAAAAAGGCAGCCGCAGAGGCCTTGGTGA--------------------- 602
* * *
consensus_9235#1 TGTCCGTCCCACCGGTCACAATTGCCGAGTCGATCGACGAGGAGCAAAACTCCGGAACGC 1107
consensus_9235#4 ------------------------------------------------------------
consensus_9235#3 ------------------------------------------------------------
consensus_9235#0 GTNCTGTCCCACCGGTNACAATTGGCGAGATCATCGACGAAGGAAGCAAAAATCCGGNAA 1403
consensus_9235#2 ------------------------------------------------------------
consensus_9235#1 CGTCGGAAAGTGACTCGGAAGGCTCGCAGCGCTCCTCCACGGGGAAGGACTTTGAGATGG 1167
consensus_9235#4 ------------------------------------------------------------
consensus_9235#3 ------------------------------------------------------------
consensus_9235#0 ANAACCGTCGGACCACGTGATCGGAANGGTACGCANGCGCTCANCACTCCACGGGGAAAG 1463
consensus_9235#2 ------------------------------------------------------------
consensus_9235#1 TCGAGCCGGATGAGGTGGATACCTCGTAAATCAGAACAAGTTAATCGACATGCGCGCGTT 1227
consensus_9235#4 ------------------------------------------------------------
consensus_9235#3 ------------------------------------------------------------
consensus_9235#0 GACNCNTNNNANACATTGGTCNAAGTCCAGGATTAAGNTGGAAAAACATCNCCNTAACAG 1523
consensus_9235#2 ------------------------------------------------------------
consensus_9235#1 ACATTTTCATATCACCCTCAATCCACGACTGCAGCAGTACTAGCTGCTTACCAGCTGAAA 1287
consensus_9235#4 ------------------------------------------------------------
consensus_9235#3 ------------------------------------------------------------
consensus_9235#0 CCANAAAACGTTTAATTCGAGANNNGCCGGNTATACATTACCANNTNACCCCCAATTCAC 1583
consensus_9235#2 ------------------------------------------------------------
consensus_9235#1 TGGATCGGATAGCAACACCAATCATTCTCGTACCACATCTGCAAACCAAACCCTGCTAAA 1347
consensus_9235#4 ------------------------------------------------------------
consensus_9235#3 ------------------------------------------------------------
consensus_9235#0 AGATTGGCAGACAACACAGTNGTACCCGNTGACGTGGNATCGCGNAAAAACACAACTANN 1643
consensus_9235#2 ------------------------------------------------------------
consensus_9235#1 AAAAAAATAATAACA--------------------------------------------- 1362
consensus_9235#4 ------------------------------------------------------------
consensus_9235#3 ------------------------------------------------------------
consensus_9235#0 TCNAGTNACAAATTGGAGCAAGCGNGCNNAAANATAACACCACCCACAAAATTTANNGGC 1703
consensus_9235#2 ------------------------------------------------------------
consensus_9235#1 ------
consensus_9235#4 ------
consensus_9235#3 ------
consensus_9235#0 ACACAC 1709
consensus_9235#2 ------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||